Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89035 results

6DJA
DownloadVisualize
BU of 6dja by Molmil
ZN-DEPENDENT 5/B/6 METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS
Descriptor: Metallo-beta-lactamase type 2, ZINC ION
Authors:Bui, A.A, Khan, N.H, Shaw, R.W, Sutton, R.B.
Deposit date:2018-05-24
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:A DNA aptamer reveals an allosteric site for inhibition in metallo-beta-lactamases.
Plos One, 14, 2019
1I41
DownloadVisualize
BU of 1i41 by Molmil
CYSTATHIONINE GAMMA-SYNTHASE IN COMPLEX WITH THE INHIBITOR APPA
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-IMINO]-5-PHOSPHONO-PENT-3-ENOIC ACID, CYSTATHIONINE GAMMA-SYNTHASE
Authors:Steegborn, C, Laber, B, Messerschmidt, A, Huber, R, Clausen, T.
Deposit date:2001-02-19
Release date:2001-09-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of cystathionine gamma-synthase inhibitor complexes rationalize the increased affinity of a novel inhibitor.
J.Mol.Biol., 311, 2001
2XIT
DownloadVisualize
BU of 2xit by Molmil
Crystal structure of monomeric MipZ
Descriptor: MIPZ
Authors:Kiekebusch, D, Michie, K.A, Essen, L.O, Lowe, J, Thanbichler, M.
Deposit date:2010-06-30
Release date:2011-07-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Localized Dimerization and Nucleoid Binding Drive Gradient Formation by the Bacterial Cell Division Inhibitor Mipz.
Mol.Cell, 46, 2012
6DDX
DownloadVisualize
BU of 6ddx by Molmil
Crystal structure of the double mutant (D52N/L375F) of NT5C2-537X in the active state, Northeast Structural Genomics Target
Descriptor: Cytosolic purine 5'-nucleotidase, PHOSPHATE ION
Authors:Forouhar, F, Dieck, C.L, Tzoneva, G, Carpenter, Z, Ambesi-Impiombato, A, Sanchez-Martin, M, Kirschner-Schwabe, R, Lew, S, Seetharaman, J, Ferrando, A.A, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2018-05-10
Release date:2018-07-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Structure and Mechanisms of NT5C2 Mutations Driving Thiopurine Resistance in Relapsed Lymphoblastic Leukemia.
Cancer Cell, 34, 2018
1I8Z
DownloadVisualize
BU of 1i8z by Molmil
CARBONIC ANHYDRASE II COMPLEXED WITH AL-6629 2H-THIENO[3,2-E]-1,2-THIAZINE-6-SULFONAMIDE, 2-(3-METHOXYPHENYL)-3-(4-MORPHOLINYL)-, 1,1-DIOXIDE
Descriptor: 6-[N-(3-METHOXY-PHENYL)-3-(MORPHOLIN-4-YLMETHYL)-2H-THIENO[3,2-E]-1,2-THIAZINE-1,1,-DIOXIDE]-SULFONAMIDE, CARBONIC ANHYDRASE II, MERCURY (II) ION, ...
Authors:Kim, C.-Y, Chang, J.S, Liao, J, May, J.A, Christianson, D.W.
Deposit date:2001-03-16
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural aspects of isozyme selectivity in the binding of inhibitors to carbonic anhydrases II and IV.
J.Med.Chem., 45, 2002
1I91
DownloadVisualize
BU of 1i91 by Molmil
CARBONIC ANHYDRASE II COMPLEXED WITH AL-6619 2H-THIENO[3,2-E]-1,2-THIAZINE-6-SULFONAMIDE, 2-(3-HYDROXYPHENYL)-3-(4-MORPHOLINYL)-, 1,1-DIOXIDE
Descriptor: 6-[N-(3-HYDROXY-PHENYL)-3-(MORPHOLIN-4-YLMETHYL)-2H-THIENO[3,2-E]-1,2-THIAZINE-1,1,-DIOXIDE]-SULFONAMIDE, CARBONIC ANHYDRASE II, MERCURY (II) ION, ...
Authors:Kim, C.-Y, Chang, J.S, Liao, J, May, J.A, Christianson, D.W.
Deposit date:2001-03-16
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural aspects of isozyme selectivity in the binding of inhibitors to carbonic anhydrases II and IV.
J.Med.Chem., 45, 2002
4UUI
DownloadVisualize
BU of 4uui by Molmil
A case study for twinned data analysis: multiple crystal forms of the enzyme N-acetyl-neuraminic lyase
Descriptor: N-ACETYLNEURAMINATE LYASE, PENTAETHYLENE GLYCOL, PYRUVIC ACID, ...
Authors:Campeotto, I, Phillips, S.E.V, Pearson, A.R.
Deposit date:2014-07-29
Release date:2015-08-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A Case Study for Twinned Data Analysis: Multiple Crystal Forms of the Enzyme N-Acetyl-Neuraminic Lyase
To be Published
4V0P
DownloadVisualize
BU of 4v0p by Molmil
Crystal structure of the MAGE homology domain of human MAGE-A3
Descriptor: MELANOMA-ASSOCIATED ANTIGEN 3
Authors:Newman, J.A, Aitkenhead, H, Cooper, C.D.O, Pinkas, D.M, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2014-09-17
Release date:2014-10-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structures of Two Melanoma-Associated Antigens Suggest Allosteric Regulation of Effector Binding.
Plos One, 11, 2016
8SNZ
DownloadVisualize
BU of 8snz by Molmil
X-ray Crystal Structure of FMN-bound long-chain flavodoxin from Rhodopseudomonas palustris
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin
Authors:Ansari, A, Khan, S.A, Miller, A.F.
Deposit date:2023-04-28
Release date:2024-03-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure, dynamics, and redox reactivity of an all-purpose flavodoxin.
J.Biol.Chem., 300, 2024
4V06
DownloadVisualize
BU of 4v06 by Molmil
Crystal structure of human tryptophan hydroxylase 2 (TPH2), catalytic domain
Descriptor: FE (III) ION, IMIDAZOLE, TRYPTOPHAN 5-HYDROXYLASE 2
Authors:Kopec, J, Oberholzer, A, Fitzpatrick, F, Newman, J, Tallant, C, Kiyani, W, Shrestha, L, Burgess-Brown, N, von Delft, F, Arrowsmith, C, Edwards, A, Bountra, C, Yue, W.W.
Deposit date:2014-09-11
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Crystal Structure of Human Tryptophane Hydroxylase 2 (Tph2), Catalytic Domain
To be Published
7RYX
DownloadVisualize
BU of 7ryx by Molmil
S. CEREVISIAE CYP51 COMPLEXED WITH VT-1129
Descriptor: (2R)-2-(2,4-difluorophenyl)-1,1-difluoro-3-(1H-tetrazol-1-yl)-1-{5-[4-(trifluoromethoxy)phenyl]pyridin-2-yl}propan-2-ol, Lanosterol 14-alpha demethylase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ruma, Y.N, Sagatova, A, Keniya, M.V, Tyndall, J.D, Monk, B.C.
Deposit date:2021-08-26
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterisation of Candida parapsilosis CYP51 as a Drug Target Using Saccharomyces cerevisiae as Host.
J Fungi, 8, 2022
2GG5
DownloadVisualize
BU of 2gg5 by Molmil
Novel bacterial methionine aminopeptidase inhibitors
Descriptor: 5-IMINO-4-(2-TRIFLUOROMETHYL-PHENYLAZO)-5H-PYRAZOL-3-YLAMINE, COBALT (II) ION, Methionine aminopeptidase, ...
Authors:Evdokimov, A.G, Pokross, M.E, Walter, R.L, Mekel, M.
Deposit date:2006-03-23
Release date:2006-06-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Serendipitous discovery of novel bacterial methionine aminopeptidase inhibitors.
Proteins, 66, 2007
1I36
DownloadVisualize
BU of 1i36 by Molmil
Structure of Conserved Protein MTH1747 of Unknown Function Reveals Structural Similarity with 3-Hydroxyacid Dehydrogenases
Descriptor: CONSERVED HYPOTHETICAL PROTEIN MTH1747, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Korolev, S.V, Dementieva, I.S, Christendat, D, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2001-02-13
Release date:2002-05-15
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:STRUCTURAL SIMILARITIES OF MTH1747 HYPOTHETICAL PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH 3-HYDROXYACID DEHYDROGENASES
to be published
7S66
DownloadVisualize
BU of 7s66 by Molmil
Extended conformation of nighttime state KaiC
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase KaiC, MAGNESIUM ION
Authors:Sandate, C.R, Swan, J.A, Partch, C.L, Lander, G.C.
Deposit date:2021-09-13
Release date:2021-09-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Coupling of distant ATPase domains in the circadian clock protein KaiC.
Nat.Struct.Mol.Biol., 29, 2022
4UU4
DownloadVisualize
BU of 4uu4 by Molmil
Crystal structure of LptH, the LptA homologous periplasmic component of the conserved lipopolysaccharide transport device from Pseudomonas aeruginosa
Descriptor: PERIPLASMIC LIPOPOLYSACCHARIDE TRANSPORT PROTEIN LPTH
Authors:Bollati, M, Villa, R, Gourlay, L.J, Barbiroli, A, Deho, G, Benedet, M, Polissi, A, Martorana, A, Sperandeo, P, Bolognesi, M, Nardini, M.
Deposit date:2014-07-24
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.751 Å)
Cite:Crystal Structure of Lpth, the Periplasmic Component of the Lipopolysaccharide Transport Machinery from Pseudomonas Aeruginosa.
FEBS J., 282, 2015
4UV6
DownloadVisualize
BU of 4uv6 by Molmil
Crystal structure of apical membrane antigen 1 from Plasmodium knowlesi
Descriptor: APICAL MEROZOITE ANTIGEN 1
Authors:Vulliez-Le Normand, B, Saul, F.A, Bentley, G.A.
Deposit date:2014-08-04
Release date:2015-04-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of Plasmodium Knowlesi Apical Membrane Antigen 1 and its Complex with an Invasion-Inhibitory Monoclonal Antibody.
Plos One, 10, 2015
2GG9
DownloadVisualize
BU of 2gg9 by Molmil
Novel bacterial methionine aminopeptidase inhibitors
Descriptor: COBALT (II) ION, METHYL N-[(2S,3R)-3-AMINO-2-HYDROXY-3-(4-ISOPROPYLPHENYL)PROPANOYL]-D-ALANYL-D-LEUCINATE, Methionine aminopeptidase, ...
Authors:Evdokimov, A.G, Pokross, M.E, Walter, R.L, Mekel, M.
Deposit date:2006-03-23
Release date:2006-06-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Serendipitous discovery of novel bacterial methionine aminopeptidase inhibitors.
Proteins, 66, 2007
4FIR
DownloadVisualize
BU of 4fir by Molmil
Crystal structure of pyridoxal biosynthesis lyase PdxS from Pyrococcus
Descriptor: Pyridoxal biosynthesis lyase pdxS, RIBOSE-5-PHOSPHATE
Authors:Matsuura, A, Yoon, J.Y, Yoon, H.J, Lee, H.H, Suh, S.W.
Deposit date:2012-06-11
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of pyridoxal biosynthesis lyase PdxS from Pyrococcus horikoshii.
Mol.Cells, 34, 2012
5DSU
DownloadVisualize
BU of 5dsu by Molmil
Crystal structure of double mutant of N-domain of human calmodulin
Descriptor: CALCIUM ION, Calmodulin, TRIETHYLENE GLYCOL
Authors:Ababou, A, Zaleska, M.
Deposit date:2015-09-17
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:On the Ca(2+) binding and conformational change in EF-hand domains: Experimental evidence of Ca(2+)-saturated intermediates of N-domain of calmodulin.
Biochim. Biophys. Acta, 1865, 2017
4FK1
DownloadVisualize
BU of 4fk1 by Molmil
Crystal Structure of Putative Thioredoxin Reductase TrxB from Bacillus anthracis
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, MAGNESIUM ION, ...
Authors:Maltseva, N, Kim, Y, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-06-12
Release date:2012-08-08
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:Crystal Structure of Putative Thioredoxin Reductase TrxB from Bacillus anthracis
To be Published
4UUC
DownloadVisualize
BU of 4uuc by Molmil
Crystal structure of human ASB11 ankyrin repeat domain
Descriptor: ANKYRIN REPEAT AND SOCS BOX PROTEIN 11
Authors:Pinkas, D.M, Sanvitale, C, Kragh Nielsen, T, Guo, K, Sorrell, F, Berridge, G, Ayinampudi, V, Wang, D, Newman, J.A, Tallant, C, Chaikuad, A, Canning, P, Kopec, J, Krojer, T, Vollmar, M, Allerston, C.K, Chalk, R, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Bullock, A.
Deposit date:2014-07-25
Release date:2014-08-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Human Asb11 Ankyrin Repeat Domain
To be Published
7RXD
DownloadVisualize
BU of 7rxd by Molmil
CryoEM structure of RBD domain of COVID-19 in complex with Legobody
Descriptor: Fab_8D3_2 heavy chain, Fab_8D3_2 light chain, Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G, ...
Authors:Wu, X.D, Rapoport, T.A.
Deposit date:2021-08-22
Release date:2021-10-06
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies).
Proc.Natl.Acad.Sci.USA, 118, 2021
2FY3
DownloadVisualize
BU of 2fy3 by Molmil
Structures of ligand bound human choline acetyltransferase provides insight into regulation of acetylcholine synthesis
Descriptor: CHOLINE ION, Choline O-acetyltransferase, GLYCEROL
Authors:Kim, A.R, Rylett, R.J, Shilton, B.H.
Deposit date:2006-02-07
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Substrate binding and catalytic mechanism of human choline acetyltransferase.
Biochemistry, 45, 2006
4V3K
DownloadVisualize
BU of 4v3k by Molmil
RNF38-UbcH5B-UB complex
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, E3 UBIQUITIN-PROTEIN LIGASE RNF38, ...
Authors:Buetow, L, Gabrielsen, M, Anthony, N.G, Dou, H, Patel, A, Aitkenhead, H, Sibbet, G.J, Smith, B.O, Huang, D.T.
Deposit date:2014-10-20
Release date:2015-04-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Activation of a Primed Ring E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin.
Mol.Cell, 58, 2015
7RXC
DownloadVisualize
BU of 7rxc by Molmil
CryoEM structure of KDELR with Legobody
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ER lumen protein-retaining receptor 2, Fab_8D3_2 heavy chain, ...
Authors:Wu, X.D, Rapoport, T.A.
Deposit date:2021-08-22
Release date:2021-10-06
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies).
Proc.Natl.Acad.Sci.USA, 118, 2021

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon