Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7VOA
DownloadVisualize
BU of 7voa by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with aRBD5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpaca nanobody
Authors:Ma, H, Zeng, W.H, Jin, T.C.
Deposit date:2021-10-13
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hetero-bivalent nanobodies provide broad-spectrum protection against SARS-CoV-2 variants of concern including Omicron.
Cell Res., 32, 2022
8H7V
DownloadVisualize
BU of 8h7v by Molmil
Trans-3/4-proline-hydroxylase H11 with AKG
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, Phytanoyl-CoA dioxygenase
Authors:Gong, W.M, Hu, X.Y.
Deposit date:2022-10-21
Release date:2023-04-19
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8H7T
DownloadVisualize
BU of 8h7t by Molmil
Trans-3/4-proline-hydroxylase H11 apo structure
Descriptor: CHLORIDE ION, Phytanoyl-CoA dioxygenase
Authors:Gong, W.M, Hu, X.Y.
Deposit date:2022-10-21
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8H81
DownloadVisualize
BU of 8h81 by Molmil
Trans-3/4-proline-hydroxylase H11 with 4-Hydroxyl-proline
Descriptor: 4-HYDROXYPROLINE, Phytanoyl-CoA dioxygenase
Authors:Gong, W.M, Hu, X.Y.
Deposit date:2022-10-21
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8H85
DownloadVisualize
BU of 8h85 by Molmil
Trans-3/4-proline-hydroxylase H11 with 3-hydroxyl-proline
Descriptor: 3-HYDROXYPROLINE, Phytanoyl-CoA dioxygenase
Authors:Gong, W.M, Hu, X.Y.
Deposit date:2022-10-21
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8H7Y
DownloadVisualize
BU of 8h7y by Molmil
Trans-3/4-proline-hydroxylase H11 with AKG and L-proline
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PROLINE, ...
Authors:Gong, W.M, Hu, X.Y.
Deposit date:2022-10-21
Release date:2023-04-19
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of L-proline trans-hydroxylase reveal the catalytic specificity and provide deeper insight into AKG-dependent hydroxylation.
Acta Crystallogr D Struct Biol, 79, 2023
8I6K
DownloadVisualize
BU of 8i6k by Molmil
Structure of hMNDA HIN with dsDNA
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), ...
Authors:Li, Y.L, Jin, T.C.
Deposit date:2023-01-28
Release date:2023-07-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural mechanism of dsDNA recognition by the hMNDA HIN domain: New insights into the DNA-binding model of a PYHIN protein.
Int.J.Biol.Macromol., 245, 2023
8JAH
DownloadVisualize
BU of 8jah by Molmil
Crystal structure of human CLEC12A C-type lectin domain
Descriptor: C-type lectin domain family 12 member A, POTASSIUM ION, SULFATE ION
Authors:Lei, Q, Tang, H, Dong, X.
Deposit date:2023-05-06
Release date:2024-03-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Mechanistic insights into the C-type lectin receptor CLEC12A-mediated immune recognition of monosodium urate crystal.
J.Biol.Chem., 300, 2024
7F4W
DownloadVisualize
BU of 7f4w by Molmil
Complex structure of HLA2402 with recognizing SARS-CoV-2 epitope pep4
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope pep4
Authors:Deng, S, Jin, T.
Deposit date:2021-06-21
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7EU2
DownloadVisualize
BU of 7eu2 by Molmil
Complex structure of HLA0201 with recognizing SARS-CoV-2 epitope S1
Descriptor: Beta-2-microglobulin, MHC class I antigen, SARS-CoV-2 T-cell Epitope S1
Authors:Deng, S, Jin, T.
Deposit date:2021-05-15
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants.
Cell Rep, 36, 2021
7ESV
DownloadVisualize
BU of 7esv by Molmil
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY
Descriptor: D(-)-TARTARIC ACID, Packaging NTPase
Authors:Zhang, C.Y, Jin, T.C.
Deposit date:2021-05-11
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY.
Int.J.Biol.Macromol., 194, 2022
7ESQ
DownloadVisualize
BU of 7esq by Molmil
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, PYROPHOSPHATE, ...
Authors:Zhang, C.Y, Jin, T.C.
Deposit date:2021-05-11
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY.
Int.J.Biol.Macromol., 194, 2022
7ESP
DownloadVisualize
BU of 7esp by Molmil
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY
Descriptor: D(-)-TARTARIC ACID, DI(HYDROXYETHYL)ETHER, Packaging NTPase
Authors:Zhang, C.Y, Jin, T.C.
Deposit date:2021-05-11
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY.
Int.J.Biol.Macromol., 194, 2022
7ESO
DownloadVisualize
BU of 7eso by Molmil
Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY
Descriptor: Packaging NTPase
Authors:Zhang, C.Y, Jin, T.C.
Deposit date:2021-05-11
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY.
Int.J.Biol.Macromol., 194, 2022
5BT1
DownloadVisualize
BU of 5bt1 by Molmil
histone chaperone Hif1 playing with histone H2A-H2B dimer
Descriptor: HAT1-interacting factor 1, Histone H2A.1, Histone H2B.1
Authors:Liu, H, Zhang, M, Gao, Y, Teng, M, Niu, L.
Deposit date:2015-06-02
Release date:2016-10-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural Insights into the Association of Hif1 with Histones H2A-H2B Dimer and H3-H4 Tetramer
Structure, 24, 2016
5Y28
DownloadVisualize
BU of 5y28 by Molmil
Crystal structure of H. pylori HtrA with PDZ2 deletion
Descriptor: 1,2-ETHANEDIOL, Periplasmic serine endoprotease DegP-like, UNK-UNK-UNK-UNK
Authors:Zhang, Z, Huang, Q, Tao, X.
Deposit date:2017-07-24
Release date:2018-08-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.08606815 Å)
Cite:The unique trimeric assembly of the virulence factor HtrA fromHelicobacter pylorioccurs via N-terminal domain swapping.
J.Biol.Chem., 294, 2019
5Y2D
DownloadVisualize
BU of 5y2d by Molmil
Crystal structure of H. pylori HtrA
Descriptor: Periplasmic serine endoprotease DegP-like, UNK-UNK-K-UNK-UNK-UNK-UNK-UNK-UNK-UNK, UNK-UNK-UNK, ...
Authors:Zhang, Z, Huang, Q, Tao, X.
Deposit date:2017-07-25
Release date:2018-08-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.70009851 Å)
Cite:The unique trimeric assembly of the virulence factor HtrA fromHelicobacter pylorioccurs via N-terminal domain swapping.
J.Biol.Chem., 294, 2019
7WBO
DownloadVisualize
BU of 7wbo by Molmil
Crystal structure of Sarcoplasmic Calcium-Binding Protein from Scylla paramamosain
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, SODIUM ION, ...
Authors:Chen, Y, Jin, T, Liu, G.
Deposit date:2021-12-17
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure Analysis of Sarcoplasmic-Calcium-Binding Protein: An Allergen in Scylla paramamosain.
J.Agric.Food Chem., 71, 2023
7X4I
DownloadVisualize
BU of 7x4i by Molmil
Crystal structure of nanobody aSA3 in complex with dimer SARS-CoV-1 RBD
Descriptor: Spike glycoprotein, nanobody aSA3
Authors:Ma, H, Zeng, W.H, Jin, T.C.
Deposit date:2022-03-02
Release date:2023-01-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:A bispecific nanobody dimer broadly neutralizes SARS-CoV-1 & 2 variants of concern and offers substantial protection against Omicron via low-dose intranasal administration.
Cell Discov, 8, 2022
7X98
DownloadVisualize
BU of 7x98 by Molmil
5-Aminolevulinate synthase HemA from Rhodopseudomonas palustris
Descriptor: 5-aminolevulinate synthase
Authors:Zhang, T.T, Liu, H.P.
Deposit date:2022-03-15
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of 5-Aminolevulinate synthase HemA from Rhodopseudomonas palustris presents multiple conformations.
Biochem.Biophys.Res.Commun., 609, 2022
<12

 

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon