Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5YEV
DownloadVisualize
BU of 5yev by Molmil
Murine DR3 death domain
分子名称: SULFATE ION, TNFRSF25 death domain
著者Yin, X, Jin, T.
登録日2017-09-19
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and activation mechanism of DR3 death domain.
Febs J., 286, 2019
5YGP
DownloadVisualize
BU of 5ygp by Molmil
Human TNFRSF25 death domain mutant-D412E
分子名称: SULFATE ION, TNFRSF25 death domain, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yin, X, Jin, T.C.
登録日2017-09-25
公開日2018-10-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Crystal structure and activation mechanism of DR3 death domain.
Febs J., 286, 2019
5Y2G
DownloadVisualize
BU of 5y2g by Molmil
Structure of MBP tagged GBS CAMP
分子名称: Maltose-binding periplasmic protein,Protein B, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Jin, T, Li, Y.
登録日2017-07-25
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure determination of the CAMP factor of Streptococcus agalactiae with the aid of an MBP tag and insights into membrane-surface attachment.
Acta Crystallogr D Struct Biol, 75, 2019
5YGS
DownloadVisualize
BU of 5ygs by Molmil
Human TNFRSF25 death domain
分子名称: Human TNRSF25 death domain, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yin, X, Jin, T.
登録日2017-09-26
公開日2018-10-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.691 Å)
主引用文献Crystal structure and activation mechanism of DR3 death domain.
Febs J., 286, 2019
5ZNY
DownloadVisualize
BU of 5zny by Molmil
Structure of mDR3_DD-C363G with MBP tag
分子名称: Maltose-binding periplasmic protein,Tumor necrosis factor receptor superfamily, member 25, SULFATE ION
著者Yin, X, Jin, T.
登録日2018-04-11
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Crystal structure and activation mechanism of DR3 death domain.
Febs J., 286, 2019
5ZNZ
DownloadVisualize
BU of 5znz by Molmil
Structure of mDR3 DD with MBP tag mutant-I387V
分子名称: Maltose-binding periplasmic protein,Tumor necrosis factor receptor superfamily, member 25, SULFATE ION
著者Jin, T, Yin, X.
登録日2018-04-12
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure and activation mechanism of DR3 death domain.
Febs J., 286, 2019
5GP1
DownloadVisualize
BU of 5gp1 by Molmil
Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH
分子名称: NICKEL (II) ION, P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, ...
著者Zhang, C, Jin, T.
登録日2016-07-30
公開日2016-12-07
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.444 Å)
主引用文献Structure of the NS5 methyltransferase from Zika virus and implications in inhibitor design
Biochem. Biophys. Res. Commun., 492, 2017
5GOZ
DownloadVisualize
BU of 5goz by Molmil
Crystal structure of ZIKV NS5 Methyltransferase in complex with GTP and SAH
分子名称: GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, PYROPHOSPHATE 2-, ...
著者Zhang, C, Jin, T.
登録日2016-07-30
公開日2016-12-07
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.049 Å)
主引用文献Structure of the NS5 methyltransferase from Zika virus and implications in inhibitor design
Biochem. Biophys. Res. Commun., 492, 2017
5I44
DownloadVisualize
BU of 5i44 by Molmil
Structure of RacA-DNA complex; P21 form
分子名称: Chromosome-anchoring protein RacA, DNA (5'-D(*TP*GP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*CP*A)-3')
著者Schumacher, M.A.
登録日2016-02-11
公開日2016-05-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.621 Å)
主引用文献Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein.
Nucleic Acids Res., 44, 2016
5I41
DownloadVisualize
BU of 5i41 by Molmil
Structure of the apo RacA DNA binding domain
分子名称: Chromosome-anchoring protein RacA
著者schumacher, M.A.
登録日2016-02-11
公開日2016-05-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein.
Nucleic Acids Res., 44, 2016
5TZF
DownloadVisualize
BU of 5tzf by Molmil
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DNA-binding protein
著者Schumacher, M.A.
登録日2016-11-21
公開日2017-04-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Nucleic Acids Res., 45, 2017
5TZD
DownloadVisualize
BU of 5tzd by Molmil
Structure of the WT S. venezulae BldD-(CTD-c-di-GMP)2 assembly intermediate
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DNA-binding protein
著者Schumacher, M.
登録日2016-11-21
公開日2017-04-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.749 Å)
主引用文献The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Nucleic Acids Res., 45, 2017
5TZG
DownloadVisualize
BU of 5tzg by Molmil
Structure of the BldD CTD(D116A)-(c-di-GMP)2, form 2
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DNA-binding protein, ZINC ION
著者Schumacher, M.A.
登録日2016-11-21
公開日2017-04-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Streptomyces master regulator BldD binds c-di-GMP sequentially to create a functional BldD2-(c-di-GMP)4 complex.
Nucleic Acids Res., 45, 2017
5VRE
DownloadVisualize
BU of 5vre by Molmil
Crystal structure of a lysosomal potassium-selective channel TMEM175 homolog from Chamaesiphon Minutus
分子名称: Putative integral membrane protein
著者Lee, C, Guo, J, Jiang, Y.
登録日2017-05-10
公開日2017-07-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.299 Å)
主引用文献The lysosomal potassium channel TMEM175 adopts a novel tetrameric architecture.
Nature, 547, 2017
5WPT
DownloadVisualize
BU of 5wpt by Molmil
Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed II conformation at 3.75 Angstrom resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Mucolipin-1, SODIUM ION
著者Chen, Q, She, J, Guo, J, Bai, X, Jiang, Y.
登録日2017-08-07
公開日2017-10-18
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (3.75 Å)
主引用文献Structure of mammalian endolysosomal TRPML1 channel in nanodiscs.
Nature, 550, 2017
5JDG
DownloadVisualize
BU of 5jdg by Molmil
Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger NCX_Mj soaked with 2.5 mM Na+ and 0.1mM Ca2+
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Liao, J, Jiang, Y.X, Faraldo-Gomez, J.D.
登録日2016-04-16
公開日2016-05-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.407 Å)
主引用文献Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger.
Nat.Struct.Mol.Biol., 23, 2016
5JDL
DownloadVisualize
BU of 5jdl by Molmil
Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger NCX_Mj soaked with 2.5 mM Na+ and 1mM Sr2+
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHLORIDE ION, PENTADECANE, ...
著者Liao, J, Jiang, Y.X, Faraldo-Gomez, J.D.
登録日2016-04-17
公開日2016-05-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.904 Å)
主引用文献Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger.
Nat.Struct.Mol.Biol., 23, 2016
7VOA
DownloadVisualize
BU of 7voa by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with aRBD5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, alpaca nanobody
著者Ma, H, Zeng, W.H, Jin, T.C.
登録日2021-10-13
公開日2022-08-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Hetero-bivalent nanobodies provide broad-spectrum protection against SARS-CoV-2 variants of concern including Omicron.
Cell Res., 32, 2022
7X4I
DownloadVisualize
BU of 7x4i by Molmil
Crystal structure of nanobody aSA3 in complex with dimer SARS-CoV-1 RBD
分子名称: Spike glycoprotein, nanobody aSA3
著者Ma, H, Zeng, W.H, Jin, T.C.
登録日2022-03-02
公開日2023-01-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.38 Å)
主引用文献A bispecific nanobody dimer broadly neutralizes SARS-CoV-1 & 2 variants of concern and offers substantial protection against Omicron via low-dose intranasal administration.
Cell Discov, 8, 2022
7V42
DownloadVisualize
BU of 7v42 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with benzyl-alcohol.
分子名称: PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, p450tol monooxygenase, ...
著者Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-08-12
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V46
DownloadVisualize
BU of 7v46 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with ortho-chlorotoluene.
分子名称: 1-chloranyl-3-methyl-benzene, PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-08-12
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V44
DownloadVisualize
BU of 7v44 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with meta-chlorotoluene.
分子名称: 1-chloranyl-2-methyl-benzene, GLYCEROL, PHOSPHATE ION, ...
著者Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-08-12
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V40
DownloadVisualize
BU of 7v40 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2
分子名称: PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, p450tol monooxygenase
著者Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-08-12
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V45
DownloadVisualize
BU of 7v45 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with para-bromotoluene.
分子名称: 1-bromanyl-4-methyl-benzene, PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
登録日2021-08-12
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7D14
DownloadVisualize
BU of 7d14 by Molmil
Mouse KCC2
分子名称: Solute carrier family 12 member 5
著者Zhang, S, Yang, M.
登録日2020-09-13
公開日2021-04-14
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2.
Commun Biol, 4, 2021

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon