5YKV
 
 | | The crystal structure of Macrobrachium rosenbergii nodavirus P-domain | | Descriptor: | Capsid protein | | Authors: | Chen, N.C, Yoshimura, M, Lin, C.C, Guan, H.H, Chuankhayan, P, Chen, C.J. | | Deposit date: | 2017-10-16 | | Release date: | 2018-10-24 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.31 Å) | | Cite: | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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5YKU
 | | The crystal structure of Macrobrachium rosenbergii nodavirus P-domain with Zn ions | | Descriptor: | Capsid protein, ZINC ION | | Authors: | Chen, N.C, Yoshimura, M, Lin, C.C, Guan, H.H, Chuankhayan, P, Chen, C.J. | | Deposit date: | 2017-10-16 | | Release date: | 2018-10-24 | | Last modified: | 2019-03-13 | | Method: | X-RAY DIFFRACTION (1.39 Å) | | Cite: | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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5YL1
 | | T=1 subviral particle of Penaeus vannamei nodavirus capsid protein deletion mutant (delta 1-37 & 251-368) | | Descriptor: | CALCIUM ION, Capsid protein | | Authors: | Chen, N.C, Yoshimura, M, Lin, C.C, Guan, H.H, Chuankhayan, P, Chen, C.J. | | Deposit date: | 2017-10-16 | | Release date: | 2018-12-12 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (3.12 Å) | | Cite: | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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6AB5
 | | Cryo-EM structure of T=1 Penaeus vannamei nodavirus | | Descriptor: | Capsid protein | | Authors: | Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J. | | Deposit date: | 2018-07-20 | | Release date: | 2019-03-20 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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6AB6
 | | Cryo-EM structure of T=3 Penaeus vannamei nodavirus | | Descriptor: | CALCIUM ION, Capsid protein | | Authors: | Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J. | | Deposit date: | 2018-07-20 | | Release date: | 2019-03-20 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (3.5 Å) | | Cite: | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Commun Biol, 2, 2019
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7XPD
 | | Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 6.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.74 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XPE
 | | Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 8.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.32 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XPF
 | | Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 8.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.13 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XPB
 | | Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 6.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.91 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XPA
 | | Cryo-EM structure of the T=3 lake sinai virus 2 virus-like capsid at pH 7.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.33 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XGZ
 | | Cryo-EM structure of the T=4 lake sinai virus 2 virus-like capsid at pH 7.5 | | Descriptor: | Capsid protein alpha | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-04-07 | | Release date: | 2023-02-08 | | Last modified: | 2023-02-15 | | Method: | ELECTRON MICROSCOPY (3.24 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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7XPG
 | | Cryo-EM structure of the T=3 lake sinai virus 1 (delta-N48) virus-like capsid at pH 6.5 | | Descriptor: | Capsid protein alpha, RNA (5'-R(P*UP*G)-3') | | Authors: | Chen, N.C, Wang, C.H, Chen, C.J, Yoshimura, M, Guan, H.H, Chuankhayan, P, Lin, C.C. | | Deposit date: | 2022-05-04 | | Release date: | 2023-02-08 | | Last modified: | 2023-08-16 | | Method: | ELECTRON MICROSCOPY (3.51 Å) | | Cite: | Structures of honeybee-infecting Lake Sinai virus reveal domain functions and capsid assembly with dynamic motions
Nat Commun, 14, 2023
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2Z5Y
 | | Crystal Structure of Human Monoamine Oxidase A (G110A) with Harmine | | Descriptor: | 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE, Amine oxidase [flavin-containing] A, DECYL(DIMETHYL)PHOSPHINE OXIDE, ... | | Authors: | Son, S.Y, Ma, J, Yoshimura, M, Tsukihara, T. | | Deposit date: | 2007-07-20 | | Release date: | 2008-04-01 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.17 Å) | | Cite: | Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors
Proc.Natl.Acad.Sci.Usa, 105, 2008
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2Z5X
 | | Crystal Structure of Human Monoamine Oxidase A with Harmine | | Descriptor: | 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE, Amine oxidase [flavin-containing] A, DECYL(DIMETHYL)PHOSPHINE OXIDE, ... | | Authors: | Son, S.Y, Ma, J, Yoshimura, M, Tsukihara, T. | | Deposit date: | 2007-07-20 | | Release date: | 2008-04-01 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors
Proc.Natl.Acad.Sci.Usa, 105, 2008
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4HL8
 | | Re-refinement of the vault ribonucleoprotein particle | | Descriptor: | Major vault protein | | Authors: | Casanas, A, Querol-Audi, J, Guerra, P, Pous, J, Tanaka, H, Tsukihara, T, Verdaguer, V, Fita, I. | | Deposit date: | 2012-10-16 | | Release date: | 2013-06-05 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (3.5 Å) | | Cite: | New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach.
Acta Crystallogr.,Sect.D, 69, 2013
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2GW3
 | | Crystal structure of stony coral fluorescent protein Kaede, green form | | Descriptor: | Kaede, NICKEL (II) ION | | Authors: | Hayashi, I, Mizuno, H, Miyawaki, A, Ikura, M. | | Deposit date: | 2006-05-03 | | Release date: | 2007-05-08 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede.
J.Mol.Biol., 372, 2007
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2GW4
 | | Crystal structure of stony coral fluorescent protein Kaede, red form | | Descriptor: | Kaede, NICKEL (II) ION | | Authors: | Hayashi, I, Mizuno, H, Miyawako, A, Ikura, M. | | Deposit date: | 2006-05-03 | | Release date: | 2007-05-08 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystallographic evidence for water-assisted photo-induced peptide cleavage in the stony coral fluorescent protein Kaede.
J.Mol.Biol., 372, 2007
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2E0M
 | | Mutant Human Ribonuclease 1 (T24L, Q28L, R31L, R32L) | | Descriptor: | CADMIUM ION, CHLORIDE ION, Ribonuclease | | Authors: | Yamada, H, Tamada, T, Kosaka, M, Kuroki, R. | | Deposit date: | 2006-10-10 | | Release date: | 2007-08-28 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines
Protein Sci., 16, 2007
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2E0O
 | | Mutant Human Ribonuclease 1 (V52L, D53L, N56L, F59L) | | Descriptor: | GLYCEROL, Ribonuclease, SULFATE ION | | Authors: | Yamada, H, Tamada, T, Kosaka, M, Kuroki, R. | | Deposit date: | 2006-10-10 | | Release date: | 2007-08-28 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines
Protein Sci., 16, 2007
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2E0L
 | | Mutant Human Ribonuclease 1 (Q28L, R31L, R32L) | | Descriptor: | CADMIUM ION, CHLORIDE ION, Ribonuclease | | Authors: | Yamada, H, Tamada, T, Kosaka, M, Kuroki, R. | | Deposit date: | 2006-10-10 | | Release date: | 2007-08-28 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines
Protein Sci., 16, 2007
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2E0J
 | | Mutant Human Ribonuclease 1 (R31L, R32L) | | Descriptor: | Ribonuclease | | Authors: | Yamada, H, Tamada, T, Kosaka, M, Kuroki, R. | | Deposit date: | 2006-10-10 | | Release date: | 2007-08-28 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines
Protein Sci., 16, 2007
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2YZ1
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2DF7
 | | Crystal structure of infectious bursal disease virus VP2 subviral particle | | Descriptor: | CALCIUM ION, CHLORIDE ION, structural polyprotein VP2 | | Authors: | Ko, T.P, Lee, C.C, Wang, M.Y, Wang, A.H. | | Deposit date: | 2006-02-27 | | Release date: | 2006-06-27 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Crystal structure of infectious bursal disease virus VP2 subviral particle at 2.6A resolution: Implications in virion assembly and immunogenicity.
J.Struct.Biol., 155, 2006
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5XQW
 | | Catalytic antibody 7B9 | | Descriptor: | Fab fragment of catalytic antibody 7B9, heavy chain, light chain, ... | | Authors: | Ito, N, Fujii, I, Tsumuraya, T. | | Deposit date: | 2017-06-07 | | Release date: | 2018-04-18 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structural basis of the broad substrate tolerance of the antibody 7B9-catalyzed hydrolysis of p-nitrobenzyl esters.
Bioorg. Med. Chem., 26, 2018
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5XMJ
 | | Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ... | | Authors: | Guan, H.H, Hsieh, Y.C, Lin, P.R, Chen, C.J. | | Deposit date: | 2017-05-15 | | Release date: | 2018-06-06 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (3.6 Å) | | Cite: | Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas.
Sci Rep, 8, 2018
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