3AP7
| Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose sialic acid | Descriptor: | CHLORIDE ION, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-01-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP9
| Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with Lacto-N-fucopentaose III | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Galectin-8, ... | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-02-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP5
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3AP4
| Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose | Descriptor: | Galectin-8, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-11 | Release date: | 2011-01-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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3AP6
| Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose 3'-sulfate | Descriptor: | Galectin-8, SULFATE ION, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Matsuzaka, T, Ideo, H, Yamashita, K, Nonaka, T. | Deposit date: | 2010-10-12 | Release date: | 2011-01-26 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem., 286, 2011
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5YHA
| Crystal structure of Pd(allyl)/Wild Type Polyhedra | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, PALLADIUM ION, ... | Authors: | Abe, S, Atsumi, K, Yamashita, K, Hirata, K, Mori, H, Ueno, T. | Deposit date: | 2017-09-27 | Release date: | 2017-11-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Structure of in cell protein crystals containing organometallic complexes. Phys Chem Chem Phys, 20, 2018
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6IGK
| Crystal Structure of human ETB receptor in complex with Endothelin-3 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CITRIC ACID, Endothelin receptor type B,Endolysin,Endothelin receptor type B, ... | Authors: | Shihoya, W, Izume, T, Inoue, A, Yamashita, K, Kadji, F.M.N, Hirata, K, Aoki, J, Nishizawa, T, Nureki, O. | Deposit date: | 2018-09-25 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of human ETBreceptor provide mechanistic insight into receptor activation and partial activation. Nat Commun, 9, 2018
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5YRB
| Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-09 | Release date: | 2018-02-21 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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5YRA
| Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-09 | Release date: | 2018-02-21 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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5YRC
| Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-09 | Release date: | 2018-02-21 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (1.67 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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6IGL
| Crystal Structure of human ETB receptor in complex with IRL1620 | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CITRIC ACID, Endothelin receptor type B,Endolysin,Endothelin receptor type B, ... | Authors: | Shihoya, W, Izume, T, Inoue, A, Yamashita, K, kadji, F.M.N, Hirata, K, Aoki, J, Nishizawa, T, Nureki, O. | Deposit date: | 2018-09-25 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structures of human ETBreceptor provide mechanistic insight into receptor activation and partial activation. Nat Commun, 9, 2018
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5YR9
| Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-08 | Release date: | 2018-02-21 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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5YHB
| Crystal structure of Pd(allyl)/polyhedra mutant with deletion of Gly192-Ala194 | Descriptor: | PALLADIUM ION, Palladium(II) allyl complex, Polyhedrin | Authors: | Abe, S, Atsumi, K, Yamashita, K, Hirata, K, Mori, H, Ueno, T. | Deposit date: | 2017-09-27 | Release date: | 2017-11-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Structure of in cell protein crystals containing organometallic complexes. Phys Chem Chem Phys, 20, 2018
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5YR1
| Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-08 | Release date: | 2018-02-21 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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5YRD
| Crystal Structure of Oxidized Cypovirus Polyhedra R13A/S193C/A194C Mutant | Descriptor: | 1,2-ETHANEDIOL, Polyhedrin | Authors: | Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T. | Deposit date: | 2017-11-09 | Release date: | 2018-02-21 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Supramolecular protein cages constructed from a crystalline protein matrix Chem. Commun. (Camb.), 54, 2018
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6LEE
| Crystal structure of Cypovirus Polyhedra mutant with deletion of Ala67-Ala104 | Descriptor: | Polyhedrin | Authors: | Abe, S, Kasamatsu, M, Hirata, K, Yamashita, K, Ueno, T. | Deposit date: | 2019-11-25 | Release date: | 2020-12-09 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | In-Cell Engineering of Protein Crystals with Nanoporous Structures for Promoting Cascade Reactions ACS Appl Nano Mater, 4, 2021
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6KR6
| Crystal structure of Drosophila Piwi | Descriptor: | MERCURY (II) ION, Protein piwi, ZINC ION, ... | Authors: | Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O. | Deposit date: | 2019-08-21 | Release date: | 2020-02-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal structure of Drosophila Piwi. Nat Commun, 11, 2020
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7VPI
| Cryo-EM structure of the human ATP13A2 (E1-ATP state) | Descriptor: | MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Polyamine-transporting ATPase 13A2 | Authors: | Tomita, A, Yamashita, K, Nishizawa, T, Nureki, O. | Deposit date: | 2021-10-17 | Release date: | 2021-12-29 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell, 81, 2021
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7VPJ
| Cryo-EM structure of the human ATP13A2 (E1P-ADP state) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Tomita, A, Yamashita, K, Nishizawa, T, Nureki, O. | Deposit date: | 2021-10-17 | Release date: | 2021-12-29 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell, 81, 2021
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7VPL
| Cryo-EM structure of the human ATP13A2 (SPM-bound E2Pi state) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Polyamine-transporting ATPase 13A2, ... | Authors: | Tomita, A, Yamashita, K, Nishizawa, T, Nureki, O. | Deposit date: | 2021-10-17 | Release date: | 2021-12-29 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell, 81, 2021
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7VPK
| Cryo-EM structure of the human ATP13A2 (SPM-bound E2P state) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... | Authors: | Tomita, A, Yamashita, K, Nishizawa, T, Nureki, O. | Deposit date: | 2021-10-17 | Release date: | 2021-12-29 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell, 81, 2021
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7VTI
| Crystal structure of the Cas13bt3-crRNA binary complex | Descriptor: | 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ... | Authors: | Nakagawa, R, Takeda, N.S, Tomita, A, Hirano, H, Kusakizako, T, Nishizawa, T, Yamashita, K, Nishimasu, H, Nureki, O. | Deposit date: | 2021-10-29 | Release date: | 2022-08-24 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Structure and engineering of the minimal type VI CRISPR-Cas13bt3. Mol.Cell, 82, 2022
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5YC8
| Crystal structure of rationally thermostabilized M2 muscarinic acetylcholine receptor bound with NMS (Hg-derivative) | Descriptor: | MERCURY (II) ION, Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine | Authors: | Suno, R, Maeda, S, Yasuda, S, Yamashita, K, Hirata, K, Horita, S, Tawaramoto, M.S, Tsujimoto, H, Murata, T, Kinoshita, M, Yamamoto, M, Kobilka, B.K, Iwata, S, Kobayashi, T. | Deposit date: | 2017-09-06 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor Nat. Chem. Biol., 14, 2018
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5ZK8
| Crystal structure of M2 muscarinic acetylcholine receptor bound with NMS | Descriptor: | Muscarinic acetylcholine receptor M2,Redesigned apo-cytochrome b562,Muscarinic acetylcholine receptor M2, N-methyl scopolamine | Authors: | Suno, R, Maeda, S, Yasuda, S, Yamashita, K, Hirata, K, Horita, S, Tawaramoto, M.S, Tsujimoto, H, Murata, T, Kinoshita, M, Yamamoto, M, Kobilka, B.K, Iwata, S, Kobayashi, T. | Deposit date: | 2018-03-23 | Release date: | 2018-11-21 | Last modified: | 2022-03-23 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structural insights into the subtype-selective antagonist binding to the M2muscarinic receptor Nat. Chem. Biol., 14, 2018
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5ZIH
| Crystal structure of the red light-activated channelrhodopsin Chrimson. | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sensory opsin A,Chrimson | Authors: | Oda, K, Vierock, J, Oishi, S, Taniguchi, R, Yamashita, K, Nishizawa, T, Hegemann, P, Nureki, O. | Deposit date: | 2018-03-15 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of the red light-activated channelrhodopsin Chrimson. Nat Commun, 9, 2018
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