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4UJD
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BU of 4ujd by Molmil
mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
分子名称: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S RIBOSOMAL PROTEIN ES1, ...
著者Yamamoto, H, Unbehaun, A, Loerke, J, Behrmann, E, Marianne, C, Burger, J, Mielke, T, Spahn, C.M.T.
登録日2014-06-18
公開日2014-07-30
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (8.9 Å)
主引用文献Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
Nat.Struct.Mol.Biol., 21, 2014
4UJC
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mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
分子名称: 18S RIBOSOMAL RNA, 28S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN ES1, ...
著者Yamamoto, H, Unbehaun, A, Loerke, J, Behrmann, E, Marianne, C, Burger, J, Mielke, T, Spahn, C.M.T.
登録日2014-06-18
公開日2014-07-30
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (9.5 Å)
主引用文献Structure of the Mammalian 80S Initiation Complex with Initiation Factor 5B on Hcv-Ires RNA.
Nat.Struct.Mol.Biol., 21, 2014
2GJU
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BU of 2gju by Molmil
Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3
分子名称: 252aa long hypothetical protein, PHOSPHATE ION, SODIUM ION
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-03-31
公開日2006-10-10
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3
To be published
2HR8
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BU of 2hr8 by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: PLATINUM (II) ION, S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Taketa, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-20
公開日2007-01-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2HUN
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BU of 2hun by Molmil
Crystal structure of hypothetical protein PH0414 from Pyrococcus horikoshii OT3
分子名称: 336aa long hypothetical dTDP-glucose 4,6-dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-26
公開日2007-01-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of hypothetical protein PH0414 from Pyrococcus horikoshii OT3
To be Published
2HVB
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BU of 2hvb by Molmil
Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3
分子名称: FE (III) ION, Superoxide reductase
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-28
公開日2007-01-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of hypothetical protein PH1083 from Pyrococcus horikoshii OT3
To be Published
5FLX
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BU of 5flx by Molmil
Mammalian 40S HCV-IRES complex
分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ...
著者Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T.
登録日2015-10-28
公開日2015-12-23
最終更新日2017-08-30
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015
2P5C
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BU of 2p5c by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Taketa, M, Ono, N, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-15
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6H
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BU of 2p6h by Molmil
Crystal structure of hypothetical protein APE1520 from Aeropyrum pernix K1
分子名称: Hypothetical protein, SULFATE ION
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-18
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of hypothetical protein APE1520 from Aeropyrum pernix K1
To be Published
2PA6
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BU of 2pa6 by Molmil
Crystal structure of MJ0232 from Methanococcus jannaschii
分子名称: Enolase
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of MJ0232 from Methanococcus jannaschii
To be Published
2P6C
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BU of 2p6c by Molmil
Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5.
分子名称: PHOSPHATE ION, aq_2013 protein
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-17
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5
To be Published
2P6D
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BU of 2p6d by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Taketa, M, Morikawa, Y, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-17
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
1WR8
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BU of 1wr8 by Molmil
Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii.
分子名称: ACETATE ION, Phosphoglycolate phosphatase
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-10-13
公開日2004-10-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a haloacid dehalogenase superfamily phosphatase PH1421 from Pyrococcus horikoshii OT3: oligomeric state and thermoadaptation mechanism.
Acta Crystallogr.,Sect.D, 64, 2008
1ZJJ
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BU of 1zjj by Molmil
Crystal structure of hypothetical protein PH1952 from Pyrococcus horikoshii OT3
分子名称: MAGNESIUM ION, hypothetical protein PH1952
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-04-29
公開日2006-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of hypothetical protein PH1952 from Pyrococcus horikoshii OT3
To be Published
1YYA
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BU of 1yya by Molmil
Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
分子名称: PHOSPHATE ION, SODIUM ION, triosephosphate isomerase
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-24
公開日2005-03-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8
To be Published
1ZZG
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BU of 1zzg by Molmil
Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8
分子名称: glucose-6-phosphate isomerase
著者Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-14
公開日2006-06-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8
To be Published
4V6T
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BU of 4v6t by Molmil
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Ramrath, D.J.F, Yamamoto, H, Rother, K, Wittek, D, Pech, M, Mielke, T, Loerke, J, Scheerer, P, Ivanov, P, Teraoka, Y, Shpanchenko, O, Nierhaus, K.H, Spahn, C.M.T.
登録日2012-01-27
公開日2014-07-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (8.3 Å)
主引用文献The complex of tmRNA-SmpB and EF-G on translocating ribosomes.
Nature, 485, 2012
5M1J
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BU of 5m1j by Molmil
Nonstop ribosomal complex bound with Dom34 and Hbs1
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Hilal, T, Yamamoto, H, Loerke, J, Buerger, J, Mielke, T, Spahn, C.M.T.
登録日2016-10-07
公開日2017-01-18
最終更新日2019-02-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution.
Nat Commun, 7, 2016
1BWV
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BU of 1bwv by Molmil
Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
著者Sugawara, H, Yamamoto, H, Shibata, N, Inoue, T, Miyake, C, Yokota, A, Kai, Y.
登録日1998-09-29
公開日1999-09-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita.
J.Biol.Chem., 274, 1999
1PRV
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BU of 1prv by Molmil
PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2012-02-22
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRU
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BU of 1pru by Molmil
PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2012-02-22
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
3JCJ
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BU of 3jcj by Molmil
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T.
登録日2015-12-18
公開日2016-03-09
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
3JCN
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BU of 3jcn by Molmil
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T.
登録日2016-01-04
公開日2016-03-09
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.
Sci Adv, 2, 2016
2FLY
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BU of 2fly by Molmil
Proadrenomedullin N-Terminal 20 Peptide
分子名称: Proadrenomedullin N-20 terminal peptide
著者Lucyk, S, Taha, H, Yamamoto, H, Miskolzie, M, Kotovych, G.
登録日2006-01-06
公開日2006-03-28
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献NMR conformational analysis of proadrenomedullin N-terminal 20 peptide, a proangiogenic factor involved in tumor growth
Biopolymers, 81, 2006
2LPU
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BU of 2lpu by Molmil
Solution structures of KmAtg10
分子名称: KmAtg10
著者Yamaguchi, M, Noda, N.N, Yamamoto, H, Shima, T, Kumeta, H, Kobashigawa, Y, Akada, R, Ohsumi, Y, Inagaki, F.
登録日2012-02-19
公開日2012-08-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural insights into atg10-mediated formation of the autophagy-essential atg12-atg5 conjugate
Structure, 20, 2012

 

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