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3LZ1
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BU of 3lz1 by Molmil
Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2)
分子名称: CHLORIDE ION, DNA (145-MER), Histone H2A, ...
著者Vasudevan, D, Chua, E.Y.D, Davey, C.A.
登録日2010-03-01
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
J.Mol.Biol., 403, 2010
3LZ0
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BU of 3lz0 by Molmil
Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)
分子名称: CHLORIDE ION, DNA (145-MER), Histone H2A, ...
著者Vasudevan, D, Chua, E.Y.D, Davey, C.A.
登録日2010-03-01
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
J.Mol.Biol., 403, 2010
3RFY
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BU of 3rfy by Molmil
Crystal structure of arabidopsis thaliana cyclophilin 38 (ATCYP38)
分子名称: Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic
著者Vasudevan, D, Swaminathan, K.
登録日2011-04-07
公開日2012-06-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Crystal structure of Arabidopsis cyclophilin38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism.
Plant Cell, 24, 2012
3WDE
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BU of 3wde by Molmil
Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A
分子名称: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
著者Vasudevan, D, Noble, C.G.
登録日2013-06-14
公開日2013-09-18
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDB
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BU of 3wdb by Molmil
N-terminal domain of Mycobacterium tuberculosis ClpC1
分子名称: FORMIC ACID, Probable ATP-dependent Clp protease ATP-binding subunit
著者Vasudevan, D, Noble, C.G.
登録日2013-06-14
公開日2013-09-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDD
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BU of 3wdd by Molmil
Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A
分子名称: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
著者Vasudevan, D, Noble, C.G.
登録日2013-06-14
公開日2013-09-18
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
3WDC
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BU of 3wdc by Molmil
N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A
分子名称: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit
著者Vasudevan, D, Noble, C.G.
登録日2013-06-14
公開日2013-09-18
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Structural basis of mycobacterial inhibition by cyclomarin A
J.Biol.Chem., 288, 2013
7WIM
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BU of 7wim by Molmil
Crystal structure of Arabidopsis thaliana FKBP43 N-terminal domain
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP43
著者Singh, A.K, Saharan, K, Baral, S, Vasudevan, D.
登録日2022-01-03
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献The plant nucleoplasmin AtFKBP43 needs its extended arms for histone interaction.
Biochim Biophys Acta Gene Regul Mech, 1865, 2022
8IBO
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BU of 8ibo by Molmil
Crystal structure of Wild-Type Mycobacterium tuberculosis ClpC1 N-terminal domain in complex with Lassomycin
分子名称: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
著者Jagdev, M.K, Vasudevan, D.
登録日2023-02-10
公開日2023-09-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin
Int.J.Biol.Macromol., 253, 2023
8IBP
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BU of 8ibp by Molmil
Crystal structure of Mycobacterium tuberculosis R21K ClpC1 N-terminal domain in complex with Lassomycin
分子名称: ACETATE ION, Lassomycin, Negative regulator of genetic competence ClpC/mecB
著者Jagdev, M.K, Vasudevan, D.
登録日2023-02-10
公開日2023-09-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of the N-terminal domain of MtClpC1 in complex with the anti-mycobacterial natural peptide Lassomycin
Int.J.Biol.Macromol., 253, 2023
7VRR
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BU of 7vrr by Molmil
Crystal structure of Arabidopsis thaliana HDT1
分子名称: Histone deacetylase HDT1
著者Kumar, A, Bobde, R.C, Vasudevan, D.
登録日2021-10-23
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
5GUI
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BU of 5gui by Molmil
Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone ClpC1 from Arabidopsis thaliana
分子名称: Chaperone protein ClpC1, chloroplastic, PHOSPHATE ION
著者Jagdev, M.K, Vasudevan, D.
登録日2016-08-29
公開日2017-03-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1.
Sci Rep, 7, 2017
5GKM
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BU of 5gkm by Molmil
Crystal structure of the N-terminal Domain of Caseinolytic protease associated chaperone ClpD from Arabidopsis thaliana
分子名称: AT5g51070/K3K7_27
著者Mohapatra, C, Vasudevan, D.
登録日2016-07-04
公開日2017-03-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures reveal N-terminal Domain of Arabidopsis thaliana ClpD to be highly divergent from that of ClpC1.
Sci Rep, 7, 2017
3LEL
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BU of 3lel by Molmil
Structural Insight into the Sequence-Dependence of Nucleosome Positioning
分子名称: 147-MER DNA, Histone H2A, Histone H2B 1.1, ...
著者Wu, B, Vasudevan, D, Davey, C.A.
登録日2010-01-15
公開日2010-05-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structural insight into the sequence dependence of nucleosome positioning
Structure, 18, 2010
7EP8
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BU of 7ep8 by Molmil
Crystal structure of PCNA from Neurospora crassa
分子名称: Proliferating cell nuclear antigen
著者Sundaram, R, Vasudevan, D.
登録日2021-04-26
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA.
J.Biol.Chem., 297, 2021
7F2J
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BU of 7f2j by Molmil
Crystal structure of AtFKBP53 FKBD in complex with rapamycin
分子名称: DI(HYDROXYETHYL)ETHER, Peptidyl-prolyl cis-trans isomerase FKBP53, RAPAMYCIN IMMUNOSUPPRESSANT DRUG, ...
著者Singh, A.K, Saharan, K, Vasudevan, D.
登録日2021-06-11
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal packing reveals rapamycin-mediated homodimerization of an FK506-binding domain.
Int.J.Biol.Macromol., 206, 2022
5FOE
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BU of 5foe by Molmil
Crystal structure of the C. elegans Protein O-fucosyltransferase 2 (CePOFUT2) double mutant (R298K-R299K) in complex with GDP and the human TSR1 from thrombospondin 1
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 2,Thrombospondin-1, ...
著者Valero-Gonzalez, J, Leonhard-Melief, C, Lira-Navarrete, E, Jimenez-Oses, G, Hernandez-Ruiz, C, Pallares, M.C, Yruela, I, Vasudevan, D, Lostao, A, Corzana, F, Takeuchi, H, Haltiwanger, R.S, Hurtado-Guerrero, R.
登録日2015-11-19
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献A Proactive Role of Water Molecules in Acceptor Recognition of Thrombospondin Type 1 Repeats by Protein-O-Fucosyltransferase 2
Nat.Chem.Biol., 12, 2016
7BUP
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BU of 7bup by Molmil
Crystal structure of PCNA from pathogenic yeast Candida albicans
分子名称: Proliferating cell nuclear antigen
著者sundaram, R, Vasudevan, D.
登録日2020-04-07
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations.
Febs Lett., 595, 2021
7CC8
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BU of 7cc8 by Molmil
Crystal structure of White Spot Syndrome Virus Thymidylate Synthase - Apo form
分子名称: SULFATE ION, TRIETHYLENE GLYCOL, Thymidylate Synthase
著者Kumar, S, Panchal, N.V, Shaikh, N, Vasudevan, D.
登録日2020-06-16
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure analysis of thymidylate synthase from white spot syndrome virus reveals WSSV-specific structural elements.
Int.J.Biol.Macromol., 167, 2021
7CCA
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BU of 7cca by Molmil
Crystal structure of White Spot Syndrome Virus Thymidylate Synthase - ternary complex with Methotrexate and dUMP
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, METHOTREXATE, Thymidylate Synthase
著者Panchal, N.V, Kumar, S, Shaikh, N, Vasudevan, D.
登録日2020-06-16
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structure analysis of thymidylate synthase from white spot syndrome virus reveals WSSV-specific structural elements.
Int.J.Biol.Macromol., 167, 2021
7VMF
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BU of 7vmf by Molmil
Crystal structure of Arabidopsis thaliana HDT2
分子名称: Histone deacetylase HDT2, SODIUM ION
著者Kumar, A, Bobde, R.C, Vasudevan, D.
登録日2021-10-08
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
7VMI
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BU of 7vmi by Molmil
Crystal structure of Arabidopsis thaliana HDT3
分子名称: Histone deacetylase HDT3
著者Bobde, R.C, Kumar, A, Vasudevan, D.
登録日2021-10-08
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
7VMH
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BU of 7vmh by Molmil
Crystal structure of Arabidopsis thaliana HDT4
分子名称: Histone deacetylase HDT4
著者Bobde, R.C, Kumar, A, Vasudevan, D.
登録日2021-10-08
公開日2022-09-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Plant-specific HDT family histone deacetylases are nucleoplasmins.
Plant Cell, 34, 2022
6ICE
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BU of 6ice by Molmil
Crystal structure of Hamster MIF
分子名称: Macrophage migration inhibitory factor
著者Sundaram, R, Vasudevan, D.
登録日2018-09-05
公開日2019-09-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Macrophage migration inhibitory factor of Syrian golden hamster shares structural and functional similarity with human counterpart and promotes pancreatic cancer.
Sci Rep, 9, 2019
6J2M
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BU of 6j2m by Molmil
Crystal structure of AtFKBP53 C-terminal domain
分子名称: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase FKBP53
著者Singh, A.K, Vasudevan, D.
登録日2019-01-01
公開日2019-12-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献AtFKBP53: a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.
Nucleic Acids Res., 48, 2020

 

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