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3VRP
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BU of 3vrp by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-EGFR peptide
Descriptor: CALCIUM ION, Epidermal growth factor receptor, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRN
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BU of 3vrn by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c
Descriptor: CALCIUM ION, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
J.Biochem., 152, 2012
3VRR
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BU of 3vrr by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c (PL mutant) in complex with phospho-EGFR peptide
Descriptor: CALCIUM ION, Epidermal growth factor receptor, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRO
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BU of 3vro by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-Src peptide
Descriptor: CALCIUM ION, Proto-oncogene tyrosine-protein kinase Src, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRQ
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BU of 3vrq by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c (PL mutant)
Descriptor: CALCIUM ION, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3WKV
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BU of 3wkv by Molmil
Voltage-gated proton channel: VSOP/Hv1 chimeric channel
Descriptor: Ion channel
Authors:Takeshita, K, Sakata, S, Yamashita, E, Fujiwara, Y, Kawanabe, A, Kurokawa, T, Okochi, Y, Matsuda, M, Narita, H, Okamura, Y, Nakagawa, A.
Deposit date:2013-10-31
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.453 Å)
Cite:X-ray crystal structure of voltage-gated proton channel.
Nat.Struct.Mol.Biol., 21, 2014
3AV4
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BU of 3av4 by Molmil
Crystal structure of mouse DNA methyltransferase 1
Descriptor: DNA (cytosine-5)-methyltransferase 1, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
3AV6
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BU of 3av6 by Molmil
Crystal structure of mouse DNA methyltransferase 1 with AdoMet
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYLMETHIONINE, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
3AV5
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BU of 3av5 by Molmil
Crystal structure of mouse DNA methyltransferase 1 with AdoHcy
Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S.
Deposit date:2011-02-22
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).
Proc.Natl.Acad.Sci.USA, 108, 2011
7BUR
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BU of 7bur by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin
Descriptor: CITRIC ACID, Chalcone synthase 1, NARINGENIN
Authors:Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
Deposit date:2020-04-08
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
7BUS
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BU of 7bus by Molmil
Chalcone synthase from Glycine max (L.) Merr (soybean)
Descriptor: Chalcone synthase
Authors:Imaizumi, R, Mameda, R, Takeshita, K, Waki, T, Kubo, H, Sakai, N, Nakata, S, Takahashi, S, Kataoka, K, Yamamoto, M, Yamashita, S, Nakayama, T.
Deposit date:2020-04-08
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Crystal structure of chalcone synthase, a key enzyme for isoflavonoid biosynthesis in soybean.
Proteins, 2020
8X36
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BU of 8x36 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form B)
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, ...
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
8X35
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BU of 8x35 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP, IPP, and magnesium ion (form A)
Descriptor: 1,2-ETHANEDIOL, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
8X37
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BU of 8x37 by Molmil
Neryl diphosphate synthase from Solanum lycopersicum complexed with DMSAPP
Descriptor: DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, Neryl-diphosphate synthase 1
Authors:Imaizumi, R, Matsuura, H, Yanai, T, Takeshita, K, Misawa, S, Yamaguchi, H, Sakai, N, Miyagi-Inoue, Y, Suenaga-Hiromori, M, Kataoka, K, Nakayama, T, Yamamoto, M, Takahashi, S, Yamashita, S.
Deposit date:2023-11-12
Release date:2024-02-07
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato.
Chembiochem, 25, 2024
5WY1
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BU of 5wy1 by Molmil
Crystal structure of mouse DNA methyltransferase 1 (T1505A mutant)
Descriptor: DNA (cytosine-5)-methyltransferase 1, ZINC ION
Authors:Kanada, K, Takeshita, K, Suetake, I, Tajima, S, Nakagawa, A.
Deposit date:2017-01-10
Release date:2017-05-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Conserved threonine 1505 in the catalytic domain stabilizes mouse DNA methyltransferase 1
J. Biochem., 162, 2017
7VPC
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BU of 7vpc by Molmil
Neryl diphosphate synthase from Solanum lycopersicum
Descriptor: 1,2-ETHANEDIOL, D-MALATE, Neryl-diphosphate synthase 1
Authors:Imaizumi, R, Misawa, S, Takeshita, K, Sakai, N, Yamamoto, M, Kataoka, K, Nakayama, T, Takahashi, S, Yamashita, S.
Deposit date:2021-10-15
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure-based engineering of a short-chain cis-prenyltransferase to biosynthesize nonnatural all-cis-polyisoprenoids: molecular mechanisms for primer substrate recognition and ultimate product chain-length determination.
Febs J., 289, 2022
2DQA
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BU of 2dqa by Molmil
Crystal Structure of Tapes japonica Lysozyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme, PLATINUM (II) ION, ...
Authors:Goto, T, Kakuta, Y, Abe, Y, Takeshita, K, Imoto, T, Ueda, T.
Deposit date:2006-05-24
Release date:2007-06-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Tapes japonica Lysozyme with Substrate Analogue: STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND MANIFESTATION OF ITS CHITINASE ACTIVITY ACCOMPANIED BY QUATERNARY STRUCTURAL CHANGE
J.Biol.Chem., 282, 2007
5Z1N
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BU of 5z1n by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
Authors:Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
Deposit date:2017-12-27
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
5Z39
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BU of 5z39 by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum form II
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
Authors:Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
Deposit date:2018-01-05
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
3VMY
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BU of 3vmy by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT)
Descriptor: Voltage-gated hydrogen channel 1
Authors:Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
Deposit date:2011-12-19
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Reduction/Dtt)
To be Published
3VMX
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BU of 3vmx by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel
Descriptor: Voltage-gated hydrogen channel 1
Authors:Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
Deposit date:2011-12-19
Release date:2012-05-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1
Nat Commun, 3, 2012
3VN0
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BU of 3vn0 by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (mutation/C245S)
Descriptor: Voltage-gated hydrogen channel 1
Authors:Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
Deposit date:2011-12-19
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Mutation/C245S)
To be Published
3VYI
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BU of 3vyi by Molmil
Crystal Structure of a trimeric coiled-coil (I/I-type) assembly domain from the voltage-gated proton channel mutant
Descriptor: Voltage-gated hydrogen channel 1
Authors:Fujiwara, Y, Takeshita, K, Nakagawa, A.
Deposit date:2012-09-25
Release date:2013-02-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.305 Å)
Cite:Gating of the designed trimeric/tetrameric voltage-gated H+ channel.
J.Physiol.(Paris), 591, 2013
3VMZ
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BU of 3vmz by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (oxidation/H2O2)
Descriptor: Voltage-gated hydrogen channel 1
Authors:Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
Deposit date:2011-12-19
Release date:2013-01-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Oxidation/H2O2)
To be Published
3AWE
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BU of 3awe by Molmil
Crystal structure of Pten-like domain of Ci-VSP (248-576)
Descriptor: ACETIC ACID, SODIUM ION, SULFATE ION, ...
Authors:Matsuda, M, Sakata, S, Takeshita, K, Suzuki, M, Yamashita, E, Okamura, Y, Nakagawa, A.
Deposit date:2011-03-19
Release date:2011-05-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Crystal structure of the cytoplasmic phosphatase and tensin homolog (PTEN)-like region of Ciona intestinalis voltage-sensing phosphatase provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity
J.Biol.Chem., 286, 2011

 

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