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5XDC
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BU of 5xdc by Molmil
Crystal structure of Indole-bound TdsC from Paenibacillus sp. A11-2
Descriptor: GLYCEROL, INDOLE, SULFATE ION, ...
Authors:Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S.
Deposit date:2017-03-28
Release date:2017-08-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5785 Å)
Cite:Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity.
J. Biol. Chem., 292, 2017
5XDB
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BU of 5xdb by Molmil
Crystal structure of FMN-bound TdsC from Paenibacillus sp. A11-2
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S.
Deposit date:2017-03-28
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.811 Å)
Cite:Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity.
J. Biol. Chem., 292, 2017
5B4O
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BU of 5b4o by Molmil
Crystal structure of Macrophage Migration Inhibitory Factor in complex with BTZO-14
Descriptor: 1,2-ETHANEDIOL, 2-pyridin-3-yl-1,3-benzothiazin-4-one, Macrophage migration inhibitory factor, ...
Authors:Oki, H, Igaki, S, Moriya, Y, Hayano, Y, Habuka, N.
Deposit date:2016-04-07
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:BTZO-1, a cardioprotective agent, reveals that macrophage migration inhibitory factor regulates ARE-mediated gene expression
Chem. Biol., 17, 2010
2LUE
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BU of 2lue by Molmil
LC3B OPTN-LIR Ptot complex structure
Descriptor: Microtubule-associated proteins 1A/1B light chain 3B, Optineurin
Authors:Rogov, V.V, Rozenknop, A, Loehr, F, Guentert, P, Doetsch, V.
Deposit date:2012-06-13
Release date:2013-07-17
Last modified:2022-08-24
Method:SOLUTION NMR
Cite:Structural basis for phosphorylation-triggered autophagic clearance of Salmonella.
Biochem.J., 454, 2013
5XDE
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BU of 5xde by Molmil
Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S.
Deposit date:2017-03-28
Release date:2017-08-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity.
J. Biol. Chem., 292, 2017
5XDG
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BU of 5xdg by Molmil
Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene sulfoxide
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S.
Deposit date:2017-03-28
Release date:2017-08-09
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity.
J. Biol. Chem., 292, 2017
2ZOY
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BU of 2zoy by Molmil
The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum
Descriptor: GLYCEROL, Transcriptional regulator
Authors:Itou, H, Yao, M, Watanabe, N, Tanaka, I.
Deposit date:2008-06-20
Release date:2008-07-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis
J.Biol.Chem., 280, 2005
2E0X
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BU of 2e0x by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli (monoclinic form)
Descriptor: CALCIUM ION, Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0W
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BU of 2e0w by Molmil
T391A precursor mutant protein of gamma-Glutamyltranspeptidase from Escherichia coli
Descriptor: Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0Y
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BU of 2e0y by Molmil
Crystal structure of the samarium derivative of mature gamma-glutamyltranspeptidase from Escherichia coli
Descriptor: GLYCEROL, Gamma-glutamyltranspeptidase, SAMARIUM (III) ION
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
5WZN
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BU of 5wzn by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - GalNAc complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Alpha-N-acetylgalactosaminidase, CALCIUM ION, ...
Authors:Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZP
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BU of 5wzp by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - ligand free
Descriptor: Alpha-N-acetylgalactosaminidase, CALCIUM ION, ZINC ION
Authors:Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZQ
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BU of 5wzq by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - quadruple mutant
Descriptor: Alpha-N-acetylgalactosaminidase, GLYCEROL, ZINC ION
Authors:Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZR
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BU of 5wzr by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - Gal-NHAc-DNJ complex
Descriptor: Alpha-N-acetylgalactosaminidase, CALCIUM ION, N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide, ...
Authors:Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
Deposit date:2017-01-18
Release date:2017-06-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
2Z8I
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BU of 2z8i by Molmil
Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with Azaserine
Descriptor: Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
Authors:Wada, K, Irie, M, Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8K
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BU of 2z8k by Molmil
Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Acivicin
Descriptor: (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID, Gamma-glutamyltranspeptidase
Authors:Wada, K, Irie, M, Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2012-04-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8J
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BU of 2z8j by Molmil
Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Azaserine prepared in the dark
Descriptor: Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
Authors:Wada, K, Irie, M, Fukuyama, K.
Deposit date:2007-09-05
Release date:2008-06-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
5YLV
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BU of 5ylv by Molmil
Crystal structure of the gastric proton pump complexed with SCH28080
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-(2-methyl-8-phenylmethoxy-imidazo[1,2-a]pyridin-3-yl)ethanenitrile, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Abe, K, Irie, K, Nakanishi, H, Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.79977775 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
5YLU
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BU of 5ylu by Molmil
Crystal structure of the gastric proton pump complexed with vonoprazan
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-[5-(2-fluorophenyl)-1-pyridin-3-ylsulfonyl-pyrrol-3-yl]-~{N}-methyl-methanamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Abe, K, Irie, K, Nakanishi, H, Fujiyoshi, Y.
Deposit date:2017-10-19
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.79988956 Å)
Cite:Crystal structures of the gastric proton pump
Nature, 556, 2018
6AKF
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BU of 6akf by Molmil
Crystal structure of mouse claudin-3 P134A mutant in complex with C-terminal fragment of Clostridium perfringens enterotoxin
Descriptor: Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S, Irie, K, Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
6AKG
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BU of 6akg by Molmil
Crystal structure of mouse claudin-3 P134G mutant in complex with C-terminal fragment of Clostridium perfringens enterotoxin
Descriptor: Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S, Irie, K, Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
6AKE
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BU of 6ake by Molmil
Crystal structure of mouse claudin-3 in complex with C-terminal fragment of Clostridium perfringens enterotoxin
Descriptor: Claudin-3, Heat-labile enterotoxin B chain
Authors:Nakamura, S, Irie, K, Fujiyoshi, Y.
Deposit date:2018-08-31
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Morphologic determinant of tight junctions revealed by claudin-3 structures.
Nat Commun, 10, 2019
1WWQ
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BU of 1wwq by Molmil
Solution Structure of Mouse ER
Descriptor: Enhancer of rudimentary homolog
Authors:Li, H, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2006-01-03
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold
J.Biomol.Nmr, 32, 2005
2QMC
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BU of 2qmc by Molmil
Crystal Structure of Helicobacter Pylori Gamma-Glutamyltranspeptidase T380A Mutant
Descriptor: Gamma-glutamyltranspeptidase, S-(P-NITROBENZYL)GLUTATHIONE
Authors:Barycki, J.J, Boanca, G, Sand, A.
Deposit date:2007-07-15
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Characterization of Helicobacter pylori gamma-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis.
Biochemistry, 46, 2007
2QM6
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BU of 2qm6 by Molmil
Crystal Structure of Helicobacter Pylori Gamma-Glutamyltranspeptidase in Complex with Glutamate
Descriptor: GLUTAMIC ACID, Gamma-glutamyltranspeptidase
Authors:Barycki, J.J, Sand, A, Boanca, G.
Deposit date:2007-07-14
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Characterization of Helicobacter pylori gamma-glutamyltranspeptidase reveals the molecular basis for substrate specificity and a critical role for the tyrosine 433-containing loop in catalysis.
Biochemistry, 46, 2007

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