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2YPF
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BU of 2ypf by Molmil
Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism
分子名称: 5'-D(*TP*AP*GP*AP*GP*GP*GP*TP*TP*AP*GP*GP*TP*TP *TP*AP*TP*AP*TP*AP*AP)-3', 5'-D(*TP*TP*TP*AP*TP*AP*TP*AP*AP*AP*CP*CP*TP*AP *AP*CP*CP*CP*TP*CP*TP*AP)-3', AVRBS3
著者Stella, S, Molina, R, Yefimenko, I, Prieto, J, Silva, G.H, Bertonati, C, Juillerat, A, Duchateau, P, Montoya, G.
登録日2012-10-30
公開日2013-08-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structure of the Avrbs3-DNA Complex Provides New Insights Into the Initial Thymine-Recognition Mechanism
Acta Crystallogr.,Sect.D, 69, 2013
4CJ9
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BU of 4cj9 by Molmil
BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form
分子名称: BURRH, SELENIUM ATOM
著者Stella, S, Molina, R, Lopez-Mendez, B, Campos-Olivas, R, Duchateau, P, Montoya, G.
登録日2013-12-19
公開日2014-07-09
最終更新日2014-07-23
実験手法X-RAY DIFFRACTION (2.214 Å)
主引用文献Bud, a Helix-Loop-Helix DNA-Binding Domain for Genome Modification
Acta Crystallogr.,Sect.D, 70, 2014
4CJA
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BU of 4cja by Molmil
BurrH DNA-binding protein from Burkholderia rhizoxinica in complex with its target DNA
分子名称: 5'-D(*DTP*AP*TP*AP*AP*CP*GP*TP*AP*TP*TP*TP*GP*CP *TP*TP*CP*TP*CP*TP*TP*AP*AP)-3', 5'-D(*DTP*TP*AP*AP*GP*AP*GP*AP*AP*GP*CP*AP*AP*DP *TP*AP*CP*GP*TP*TP*AP*TP*AP)-3', BURRH
著者Stella, S, Molina, R, Lopez-Mendez, B, Campos-Olivas, R, Duchateau, P, Montoya, G.
登録日2013-12-19
公開日2014-07-09
最終更新日2014-07-23
実験手法X-RAY DIFFRACTION (2.651 Å)
主引用文献Bud, a Helix-Loop-Helix DNA-Binding Domain for Genome Modification
Acta Crystallogr.,Sect.D, 70, 2014
3IV5
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BU of 3iv5 by Molmil
Crystal structure of Fis bound to 27 bp optimal binding sequence F1
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-08-31
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JR9
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BU of 3jr9 by Molmil
Crystal structure of Fis bound to 27 bp optimal binding sequence F2
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRF
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BU of 3jrf by Molmil
Crystal structure of Fis bound to 27 bp DNA F27 containing a C/G at center
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRD
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BU of 3jrd by Molmil
Crystal structure of Fis bound to 27 bp DNA F25 containing T2A3 sequence at center
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRB
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BU of 3jrb by Molmil
Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRH
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BU of 3jrh by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F21
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRA
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BU of 3jra by Molmil
Crystal structure of Fis bound to 27bp non consensus sequence DNA F6
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRC
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BU of 3jrc by Molmil
Crystal structure of Fis bound to 27 bp DNA F29 containing 5 G/Cs at center
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRI
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BU of 3jri by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRG
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BU of 3jrg by Molmil
Crystal structure of Fis bound to 27 bp non consensus sequence DNA F18
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
3JRE
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BU of 3jre by Molmil
Crystal structure of Fis bound to 27 bp DNA F26 containing A-tract at center
分子名称: DNA (27-MER), DNA-binding protein fis
著者Stella, S, Cascio, D, Johnson, R.C.
登録日2009-09-08
公開日2010-04-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
Genes Dev., 24, 2010
5MGA
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BU of 5mga by Molmil
Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage
分子名称: CRISPR-associated endonuclease Cpf1, DNA (26-MER), DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ...
著者Montoya, G, Stella, S.
登録日2016-11-21
公開日2017-06-21
最終更新日2018-10-24
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the Cpf1 endonuclease R-loop complex after target DNA cleavage.
Nature, 546, 2017
6GTE
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BU of 6gte by Molmil
Transient state structure of CRISPR-Cpf1 (Cas12a) I3 conformation
分子名称: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*AP*AP*CP*AP*AP*GP*CP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*G)-3'), ...
著者Montoya, G, Mesa, P, Stella, S.
登録日2018-06-18
公開日2018-12-19
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
6GTG
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BU of 6gtg by Molmil
Transition state structure of Cpf1(Cas12a) I4 conformation
分子名称: CRISPR-associated endonuclease Cas12a, DNA (32-MER), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'), ...
著者Mesa, P, Montoya, G, Stella, S.
登録日2018-06-18
公開日2018-12-19
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
6GTF
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BU of 6gtf by Molmil
Transient state structure of CRISPR-Cpf1 (Cas12a) I5 conformation
分子名称: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*AP*TP*GP*AP*CP*TP*TP*CP*TP*CP*TP*AP*AP*CP*AP*AP*GP*CP*TP*CP*G)-3'), DNA (5'-D(P*CP*GP*AP*GP*CP*TP*CP*GP*TP*TP*AP*GP*AP*GP*AP*A)-3'), ...
著者Montoya, G, Mesa, P, Stella, S.
登録日2018-06-18
公開日2018-12-19
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Conformational Activation Promotes CRISPR-Cas12a Catalysis and Resetting of the Endonuclease Activity.
Cell, 175, 2018
5E3M
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BU of 5e3m by Molmil
Crystal structure of Fis bound to 27bp DNA F35 (AAATTAGTTTGAATCTCGAGCTAATTT)
分子名称: DNA (27-MER), DNA-binding protein Fis
著者Stella, S, Hancock, S.P, Cascio, D, Johnson, R.C.
登録日2015-10-03
公開日2016-03-09
最終更新日2022-03-23
実験手法X-RAY DIFFRACTION (2.886 Å)
主引用文献DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.
Plos One, 11, 2016
4UT0
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BU of 4ut0 by Molmil
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7)
分子名称: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', ...
著者Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G.
登録日2014-07-17
公開日2014-12-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol., 22, 2015
7ODF
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BU of 7odf by Molmil
Structure of the mini-RNA-guided endonuclease CRISPR-Cas_phi3
分子名称: Cas_phi3, DNA (5'-D(P*GP*G)-3'), DNA (5'-D(P*GP*TP*AP*AP*TP*TP*CP*AP*G)-3'), ...
著者Carabias del Rey, A, Fugilsang, A, Temperini, P, Pape, T, Sofos, N, Stella, S, Erledsson, S, Montoya, G.
登録日2021-04-29
公開日2021-07-21
最終更新日2021-08-11
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the mini-RNA-guided endonuclease CRISPR-Cas12j3.
Nat Commun, 12, 2021
8AXA
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BU of 8axa by Molmil
Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)
分子名称: Cas12k, DNA non-target strand, DNA target strand, ...
著者Tenjo-Castano, F, Sofos, N, Stella, S, Fuglsang, A, Pape, T, Mesa, P, Stutzke, L.S, Temperini, P, Montoya, G.
登録日2022-08-31
公開日2024-04-10
実験手法ELECTRON MICROSCOPY (2.96 Å)
主引用文献Conformational Landscape of the Type V-K CRISPR-associated Transposon Integration Assembly
To Be Published
8AXB
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BU of 8axb by Molmil
Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)
分子名称: Cas12k, sgRNA
著者Tenjo-Castano, F, Sofos, N, Stella, S, Molina, R, Pape, T, Lopez-Mendez, B, Stutzke, L.S, Temperini, P, Montoya, G.
登録日2022-08-31
公開日2024-04-10
実験手法ELECTRON MICROSCOPY (2.87 Å)
主引用文献Structural prediction of the Cas12k interaction with the transposon pre-integration complex
To Be Published
4UNB
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BU of 4unb by Molmil
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 6 DAYS INCUBATION IN 5MM MN (STATE 5)
分子名称: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*C)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*A)-3', ...
著者Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G.
登録日2014-05-26
公開日2014-12-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol., 22, 2015
4UN8
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BU of 4un8 by Molmil
THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 1H INCUBATION IN 5MM MN (STATE 2)
分子名称: 25MER, HOMING ENDONUCLEASE I-DMOI, MANGANESE (II) ION
著者Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G.
登録日2014-05-26
公開日2014-12-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Nat.Struct.Mol.Biol., 22, 2015

 

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