Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3IPP
DownloadVisualize
BU of 3ipp by Molmil
crystal structure of sulfur-free YnjE
Descriptor: GLYCEROL, PHOSPHATE ION, Putative thiosulfate sulfurtransferase ynjE, ...
Authors:Haenzelmann, P, Kuper, J, Schindelin, H.
Deposit date:2009-08-18
Release date:2009-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains.
Protein Sci., 18, 2009
3R3M
DownloadVisualize
BU of 3r3m by Molmil
Crystal structure of the FAF1 UBX domain
Descriptor: FAS-associated factor 1, PHOSPHATE ION
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-03-16
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Hierarchical Binding of Cofactors to the AAA ATPase p97.
Structure, 19, 2011
3TIW
DownloadVisualize
BU of 3tiw by Molmil
Crystal structure of p97N in complex with the C-terminus of gp78
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase AMFR, Transitional endoplasmic reticulum ATPase
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2011-08-22
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The Structural and Functional Basis of the p97/Valosin-containing Protein (VCP)-interacting Motif (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE N-TERMINAL DOMAIN OF p97.
J.Biol.Chem., 286, 2011
7PYV
DownloadVisualize
BU of 7pyv by Molmil
Crystal structure of human UBA6 in complex with the ubiquitin-like modifier FAT10
Descriptor: UBD, Ubiquitin-like modifier-activating enzyme 6,Ubiquitin-like modifier-activating enzyme 1,Ubiquitin-like modifier-activating enzyme 6
Authors:Li, S, Truongvan, N, Schindelin, H.
Deposit date:2021-10-11
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Structures of UBA6 explain its dual specificity for ubiquitin and FAT10.
Nat Commun, 13, 2022
7PVN
DownloadVisualize
BU of 7pvn by Molmil
Crystal Structure of Human UBA6 in Complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Truongvan, N, Li, S, Schindelin, H.
Deposit date:2021-10-05
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structures of UBA6 explain its dual specificity for ubiquitin and FAT10.
Nat Commun, 13, 2022
7PUX
DownloadVisualize
BU of 7pux by Molmil
Structure of p97 N-D1(L198W) in complex with Fragment TROLL2
Descriptor: (1S)-2-amino-1-(4-bromophenyl)ethan-1-ol, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Bothe, S, Schindelin, H.
Deposit date:2021-10-01
Release date:2022-12-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Fragment screening using biolayer interferometry reveals ligands targeting the SHP-motif binding site of the AAA+ ATPase p97
Commun Chem, 5, 2022
7POE
DownloadVisualize
BU of 7poe by Molmil
Phosphoglycolate Phosphatase with Inhibitor CP1
Descriptor: 2-[[4-[4-[(2-carboxyphenyl)carbamoyl]phenoxy]phenyl]carbonylamino]benzoic acid, GLYCEROL, Glycerol-3-phosphate phosphatase, ...
Authors:Schloetzer, J, Fratz, S, Schindelin, H.
Deposit date:2021-09-08
Release date:2022-12-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Phosphoglycolate phosphatase with inhibitor
To Be Published
4TK4
DownloadVisualize
BU of 4tk4 by Molmil
GephE in complex with a GABA receptor alpha3 subunit derived double mutant peptide in space group P61
Descriptor: Gamma-aminobutyric acid receptor subunit alpha-3, Gephyrin
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-05-25
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.601 Å)
Cite:Molecular basis of the alternative recruitment of GABAA versus glycine receptors through gephyrin.
Nat Commun, 5, 2014
4TK2
DownloadVisualize
BU of 4tk2 by Molmil
Geph E in complex with a GABA receptor alpha3 subunit derived peptide in space group P61
Descriptor: Gamma-aminobutyric acid receptor subunit alpha-3, Gephyrin
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-05-25
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Molecular basis of the alternative recruitment of GABAA versus glycine receptors through gephyrin.
Nat Commun, 5, 2014
4TK1
DownloadVisualize
BU of 4tk1 by Molmil
Geph E in complex with a GABA receptor alpha3 subunit derived peptide in space group P21212
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Gamma-aminobutyric acid receptor subunit alpha-3, ...
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-05-25
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of the alternative recruitment of GABAA versus glycine receptors through gephyrin.
Nat Commun, 5, 2014
4TK3
DownloadVisualize
BU of 4tk3 by Molmil
Geph E in complex with a GABA receptor alpha3 derived double mutant peptide in spacegroup P21212
Descriptor: Gamma-aminobutyric acid receptor subunit alpha-3, Gephyrin
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-05-25
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of the alternative recruitment of GABAA versus glycine receptors through gephyrin.
Nat Commun, 5, 2014
4U90
DownloadVisualize
BU of 4u90 by Molmil
GephE in complex with PEG crosslinked GABA receptor alpha3 subunit derived dimeric peptide
Descriptor: 1,1'-[ethane-1,2-diylbis(oxyethane-2,1-diyl)]bis(1H-pyrrole-2,5-dione), 1,4-BUTANEDIOL, Gamma-aminobutyric acid receptor subunit alpha-3, ...
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-08-05
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors.
Angew.Chem.Int.Ed.Engl., 54, 2015
4U91
DownloadVisualize
BU of 4u91 by Molmil
GephE in complex with Para-Phenyl crosslinked Glycine receptor beta subunit derived dimeric peptide
Descriptor: 1,1'-benzene-1,4-diylbis(1H-pyrrole-2,5-dione), 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Kasaragod, V.B, Maric, H.M, Schindelin, H.
Deposit date:2014-08-05
Release date:2014-12-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and Synthesis of High-Affinity Dimeric Inhibitors Targeting the Interactions between Gephyrin and Inhibitory Neurotransmitter Receptors.
Angew.Chem.Int.Ed.Engl., 54, 2015
6YK0
DownloadVisualize
BU of 6yk0 by Molmil
Crystal structure of mouse pyridoxal kinase in complex with ATP-gamma-S
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Kasaragod, V.B, Schindelin, H.
Deposit date:2020-04-05
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Pyridoxal kinase inhibition by artemisinins down-regulates inhibitory neurotransmission.
Proc.Natl.Acad.Sci.USA, 117, 2020
6YJZ
DownloadVisualize
BU of 6yjz by Molmil
Crystal structure of mouse pyridoxal kinase in apo form
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Pyridoxal Kinase, ...
Authors:Kasaragod, V.B, Schindelin, H.
Deposit date:2020-04-05
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Pyridoxal kinase inhibition by artemisinins down-regulates inhibitory neurotransmission.
Proc.Natl.Acad.Sci.USA, 117, 2020
6YK1
DownloadVisualize
BU of 6yk1 by Molmil
Crystal structure of mouse pyridoxal kinase in complex with ATP-gamma-S and artesunate
Descriptor: 1,2-ETHANEDIOL, Artesunate, GLYCEROL, ...
Authors:Kasaragod, V.B, Schindelin, H.
Deposit date:2020-04-05
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Pyridoxal kinase inhibition by artemisinins down-regulates inhibitory neurotransmission.
Proc.Natl.Acad.Sci.USA, 117, 2020
6ZHT
DownloadVisualize
BU of 6zht by Molmil
Uba1-Ubc13 disulfide mediated complex
Descriptor: CHLORIDE ION, GLYCEROL, Ubiquitin-activating enzyme E1 1, ...
Authors:Schaefer, A, Misra, M, Schindelin, H.
Deposit date:2020-06-23
Release date:2022-01-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:ATP induced conformational changes facilitate E1-E2 disulfide bridging in the ubiquitin system.
To Be Published
6ZHS
DownloadVisualize
BU of 6zhs by Molmil
Uba1 bound to two E2 (Ubc13) molecules
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin-activating enzyme E1 1, ...
Authors:Misra, M, Schindelin, H.
Deposit date:2020-06-23
Release date:2022-01-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:ATP induced conformational changes facilitate E1-E2 disulfide bridging in the ubiquitin system.
To Be Published
6ZHU
DownloadVisualize
BU of 6zhu by Molmil
Yeast Uba1 in complex with Ubc3 and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ubiquitin-activating enzyme E1 1, ...
Authors:Misra, M, Schindelin, H.
Deposit date:2020-06-23
Release date:2022-01-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:ATP induced conformational changes facilitate E1-E2 disulfide bridging in the ubiquitin system
To Be Published
4BKM
DownloadVisualize
BU of 4bkm by Molmil
Crystal structure of the murine AUM (phosphoglycolate phosphatase) capping domain as a fusion protein with the catalytic core domain of murine chronophin (pyridoxal phosphate phosphatase)
Descriptor: MAGNESIUM ION, NITRATE ION, PYRIDOXAL PHOSPHATE PHOSPHATASE, ...
Authors:Knobloch, G, Seifried, A, Gohla, A, Schindelin, H.
Deposit date:2013-04-26
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Evolutionary and Structural Analyses of the Mammalian Haloacid Dehalogenase-Type Phosphatases Aum and Chronophin Provide Insight Into the Basis of Their Different Substrate Specificities.
J.Biol.Chem., 289, 2014
4BX0
DownloadVisualize
BU of 4bx0 by Molmil
Crystal Structure of a Monomeric Variant of murine Chronophin (Pyridoxal Phosphate phosphatase)
Descriptor: GLYCEROL, MAGNESIUM ION, PYRIDOXAL PHOSPHATE PHOSPHATASE
Authors:Kestler, C, Knobloch, G, Gohla, A, Schindelin, H.
Deposit date:2013-07-08
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Chronophin Dimerization is Required for Proper Positioning of its Substrate Specificity Loop
J.Biol.Chem., 289, 2014
4BX3
DownloadVisualize
BU of 4bx3 by Molmil
Crystal Structure of murine Chronophin (Pyridoxal Phosphate Phosphatase)
Descriptor: GLYCEROL, MAGNESIUM ION, PYRIDOXAL PHOSPHATE PHOSPHATASE
Authors:Knobloch, G, Gohla, A, Schindelin, H.
Deposit date:2013-07-08
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Chronophin Dimerization is Required for Proper Positioning of its Substrate Specificity Loop.
J.Biol.Chem., 289, 2014
4BX2
DownloadVisualize
BU of 4bx2 by Molmil
Crystal Structure of murine Chronophin (Pyridoxal Phosphate Phosphatase) in complex with Beryllium trifluoride
Descriptor: BERYLLIUM TRIFLUORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Knobloch, G, Gohla, A, Schindelin, H.
Deposit date:2013-07-08
Release date:2013-12-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Chronophin Dimerization is Required for Proper Positioning of its Substrate Specificity Loop.
J.Biol.Chem., 289, 2014
3M63
DownloadVisualize
BU of 3m63 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, Ubiquitin conjugation factor E4, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
3M62
DownloadVisualize
BU of 3m62 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Rad23
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, UV excision repair protein RAD23, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon