Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1LA6
DownloadVisualize
BU of 1la6 by Molmil
The crystal structure of Trematomus newnesi hemoglobin in a partial hemichrome state
分子名称: CARBON MONOXIDE, Hemoglobin alpha-1 chain, Hemoglobin beta-1/2 chain, ...
著者Riccio, A, Vitagliano, L, di Prisco, G, Zagari, A, Mazzarella, L.
登録日2002-03-28
公開日2002-07-31
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of a tetrameric hemoglobin in a partial hemichrome state
Proc.Natl.Acad.Sci.USA, 99, 2002
4UUR
DownloadVisualize
BU of 4uur by Molmil
Cold-adapted truncated hemoglobin from the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125
分子名称: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE HEMOGLOBIN-LIKE OXYGEN-BINDING PROTEIN
著者Pesce, A, Giordano, D, Riccio, A, Nardini, M, Caldelli, E, Howes, B, Bustamante, J.P, Boechi, L, Estrin, D, di Prisco, G, Smulevich, G, Verde, C, Bolognesi, M.
登録日2014-07-31
公開日2015-06-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structural Flexibility of the Heme Cavity in the Cold-Adapted Truncated Hemoglobin from the Antarctic Marine Bacterium Pseudoalteromonas Haloplanktis Tac125.
FEBS J., 282, 2015
2AA1
DownloadVisualize
BU of 2aa1 by Molmil
Crystal structure of the cathodic hemoglobin isolated from the Antarctic fish Trematomus Newnesi
分子名称: Hemoglobin alpha-1 chain, Hemoglobin beta-C chain, PROTOPORPHYRIN IX CONTAINING FE
著者Mazzarella, L, Bonomi, G, Lubrano, M.C, Merlino, A, Riccio, A, Vergara, A, Vitagliano, L, Verde, C, Di Prisco, G.
登録日2005-07-13
公開日2005-08-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Minimal structural requirements for root effect: crystal structure of the cathodic hemoglobin isolated from the antarctic fish Trematomus newnesi
Proteins, 62, 2006
11BA
DownloadVisualize
BU of 11ba by Molmil
BINDING OF A SUBSTRATE ANALOGUE TO A DOMAIN SWAPPING PROTEIN IN THE COMPLEX OF BOVINE SEMINAL RIBONUCLEASE WITH URIDYLYL-2',5'-ADENOSINE
分子名称: PROTEIN (RIBONUCLEASE, SEMINAL), SULFATE ION, ...
著者Vitagliano, L, Adinolfi, S, Riccio, A, Sica, F, Zagari, A, Mazzarella, L.
登録日1999-03-17
公開日1999-03-26
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Binding of a substrate analog to a domain swapping protein: X-ray structure of the complex of bovine seminal ribonuclease with uridylyl(2',5')adenosine.
Protein Sci., 7, 1998
1S5X
DownloadVisualize
BU of 1s5x by Molmil
The crystal structure of Trematomus bernacchii hemoglobin oxidized by air
分子名称: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
著者Vitagliano, L, Bonomi, G, Riccio, A, di Prisco, G, Smulevich, G, Mazzarella, L.
登録日2004-01-22
公開日2004-05-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The oxidation process of Antarctic fish hemoglobins
Eur.J.Biochem., 271, 2004
1S5Y
DownloadVisualize
BU of 1s5y by Molmil
The crystal structure of Trematomus bernacchii hemoglobin oxidized by ferricyanide
分子名称: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
著者Vitagliano, L, Bonomi, G, Riccio, A, di Prisco, G, Smulevich, G, Mazzarella, L.
登録日2004-01-22
公開日2004-05-04
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The oxidation process of Antarctic fish hemoglobins
Eur.J.Biochem., 271, 2004
2PEG
DownloadVisualize
BU of 2peg by Molmil
Crystal structure of Trematomus bernacchii hemoglobin in a partial hemichrome state
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
著者Vergara, A, Franzese, M, Merlino, A, Vitagliano, L, Mazzarella, L.
登録日2007-04-03
公開日2007-07-24
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural characterization of ferric hemoglobins from three antarctic fish species of the suborder notothenioidei.
Biophys.J., 93, 2007
7ZCE
DownloadVisualize
BU of 7zce by Molmil
SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
著者Chaves-Sanjuan, A, Bolognesi, M.
登録日2022-03-28
公開日2022-10-12
最終更新日2023-02-08
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery.
Mol.Ther., 31, 2022
7ZCF
DownloadVisualize
BU of 7zcf by Molmil
SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, scFv76 single chain fragment
著者Chaves-Sanjuan, A, Bolognesi, M.
登録日2022-03-28
公開日2022-10-12
最終更新日2023-02-08
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery.
Mol.Ther., 31, 2022
1N3Z
DownloadVisualize
BU of 1n3z by Molmil
Crystal structure of the [S-carboxyamidomethyl-Cys31, S-carboxyamidomethyl-Cys32] monomeric derivative of the bovine seminal ribonuclease in the liganded state
分子名称: 3'-URIDINEMONOPHOSPHATE, ADENOSINE, Ribonuclease, ...
著者Sica, F, Di Fiore, A, Zagari, A, Mazzarella, L.
登録日2002-10-30
公開日2003-08-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The unswapped chain of bovine seminal ribonuclease: Crystal structure of the free and liganded monomeric derivative
Proteins, 52, 2003
3D1K
DownloadVisualize
BU of 3d1k by Molmil
R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state
分子名称: ACETYL GROUP, CARBON MONOXIDE, Hemoglobin subunit alpha-1, ...
著者Vitagliano, L, Vergara, A, Bonomi, G, Merlino, A, Mazzarella, L.
登録日2008-05-06
公開日2008-08-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state.
J.Am.Chem.Soc., 130, 2008
11BG
DownloadVisualize
BU of 11bg by Molmil
A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE
分子名称: PROTEIN (BOVINE SEMINAL RIBONUCLEASE), SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
著者Vitagliano, L, Adinolfi, S, Sica, F, Merlino, A, Zagari, A, Mazzarella, L.
登録日1999-03-11
公開日1999-11-05
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease.
J.Mol.Biol., 293, 1999
2H8D
DownloadVisualize
BU of 2h8d by Molmil
Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 8.4
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, POTASSIUM ION, ...
著者Mazzarella, L, Vergara, A, Vitagliano, L, Merlino, A, Bonomi, G, Scala, S, Verde, C, di Prisco, G.
登録日2006-06-07
公開日2006-08-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献High resolution crystal structure of deoxy hemoglobin from Trematomus bernacchii at different pH values: The role of histidine residues in modulating the strength of the root effect.
Proteins, 65, 2006
2H8F
DownloadVisualize
BU of 2h8f by Molmil
Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 6.2
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
著者Mazzarella, L, Vergara, A, Vitagliano, L, Merlino, A, Bonomi, G, Scala, S, Verde, C, di Prisco, G.
登録日2006-06-07
公開日2006-08-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献High resolution crystal structure of deoxy hemoglobin from Trematomus bernacchii at different pH values: The role of histidine residues in modulating the strength of the root effect.
Proteins, 65, 2006
3BCP
DownloadVisualize
BU of 3bcp by Molmil
Crystal Structure of The Swapped non covalent form of P19A/L28Q/N67D BS-RNase
分子名称: Seminal ribonuclease
著者Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
登録日2007-11-13
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
3BCM
DownloadVisualize
BU of 3bcm by Molmil
Crystal Structure of The Unswapped Form of P19A/L28Q/N67D BS-RNase
分子名称: PHOSPHATE ION, Seminal ribonuclease
著者Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
登録日2007-11-13
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
3BCO
DownloadVisualize
BU of 3bco by Molmil
Crystal Structure of The Swapped FOrm of P19A/L28Q/N67D BS-RNase
分子名称: Seminal ribonuclease
著者Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
登録日2007-11-13
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
1JVT
DownloadVisualize
BU of 1jvt by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)
分子名称: RIBONUCLEASE A
著者Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
登録日2001-08-31
公開日2002-06-05
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1JVV
DownloadVisualize
BU of 1jvv by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO-SOAKED FORM)
分子名称: RIBONUCLEASE A
著者Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
登録日2001-08-31
公開日2002-06-05
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1YV6
DownloadVisualize
BU of 1yv6 by Molmil
X-ray structure of M23L onconase at 298K
分子名称: P-30 protein, SULFATE ION
著者Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
登録日2005-02-15
公開日2005-03-01
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
1JVU
DownloadVisualize
BU of 1jvu by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)
分子名称: CYTIDINE-2'-MONOPHOSPHATE, RIBONUCLEASE A
著者Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
登録日2001-08-31
公開日2002-06-05
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1YV7
DownloadVisualize
BU of 1yv7 by Molmil
X-ray structure of (C87S,des103-104) onconase
分子名称: P-30 protein, SULFATE ION
著者Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
登録日2005-02-15
公開日2005-03-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
1YV4
DownloadVisualize
BU of 1yv4 by Molmil
X-ray structure of M23L onconase at 100K
分子名称: P-30 protein, SULFATE ION
著者Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
登録日2005-02-15
公開日2005-03-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
1Y92
DownloadVisualize
BU of 1y92 by Molmil
Crystal structure of the P19A/N67D Variant Of Bovine seminal Ribonuclease
分子名称: Seminal ribonuclease
著者Picone, D, Di Fiore, A, Ercole, C, Franzese, M, Sica, F, Tomaselli, S, Mazzarella, L.
登録日2004-12-14
公開日2004-12-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Role of the Hinge Loop in Domain Swapping: THE SPECIAL CASE OF BOVINE SEMINAL RIBONUCLEASE.
J.Biol.Chem., 280, 2005
1Y94
DownloadVisualize
BU of 1y94 by Molmil
Crystal structure of the G16S/N17T/P19A/S20A/N67D Variant Of Bovine seminal Ribonuclease
分子名称: Seminal ribonuclease
著者Picone, D, Di Fiore, A, Ercole, C, Franzese, M, Sica, F, Tomaselli, S, Mazzarella, L.
登録日2004-12-14
公開日2004-12-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Role of the Hinge Loop in Domain Swapping: THE SPECIAL CASE OF BOVINE SEMINAL RIBONUCLEASE.
J.Biol.Chem., 280, 2005

 

12>

219140

件を2024-05-01に公開中

PDB statisticsPDBj update infoContact PDBjnumon