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8DF8
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BU of 8df8 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 40 base pair symmetric DNA complex
Descriptor: DNA (42-MER), PHOSPHATE ION, PHOSPHITE ION, ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF9
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BU of 8df9 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
Descriptor: DNA (33-MER), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3'), ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DFB
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BU of 8dfb by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 39 base pair symmetric DNA complex
Descriptor: DNA (40-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
8DF7
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BU of 8df7 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex
Descriptor: DNA (39-MER), POTASSIUM ION, Topoisomerase V
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Method:X-RAY DIFFRACTION (3.52 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
1L2K
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BU of 1l2k by Molmil
Neutron Structure Determination of Sperm Whale Met-Myoglobin at 1.5A Resolution.
Descriptor: AMMONIUM CATION WITH D, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Tanaka, I, Engler, N, Niimura, N, Parak, F.G.
Deposit date:2002-02-21
Release date:2002-08-21
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Hydrogen and deuterium in myoglobin as seen by a neutron structure determination at 1.5 A resolution.
Biophys.Chem., 95, 2002
1DO3
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BU of 1do3 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) AFTER PHOTOLYSIS AT T>180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO7
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BU of 1do7 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) REBINDING STRUCTURE AFTER PHOTOLYSIS AT T< 180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-19
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO1
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BU of 1do1 by Molmil
CARBONMONOXY-MYOGLOBIN MUTANT L29W AT 105K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
1DO4
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BU of 1do4 by Molmil
CARBONMONOXY-MYOGLOBIN (MUTANT L29W) AFTER PHOTOLYSIS AT T<180K
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ostermann, A, Waschipky, R, Parak, F.G, Nienhaus, G.U.
Deposit date:1999-12-18
Release date:2000-01-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Ligand binding and conformational motions in myoglobin.
Nature, 404, 2000
5HM5
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BU of 5hm5 by Molmil
Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V
Descriptor: Topoisomerase V
Authors:Rajan, R, Osterman, A, Mondragon, A.
Deposit date:2016-01-15
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Methanopyrus kandleri topoisomerase V contains three distinct AP lyase active sites in addition to the topoisomerase active site.
Nucleic Acids Res., 44, 2016
1YB0
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BU of 1yb0 by Molmil
Structure of PlyL
Descriptor: PHOSPHATE ION, ZINC ION, prophage LambdaBa02, ...
Authors:Low, L.Y, Yang, C, Perego, M, Osterman, A, Liddington, R.C.
Deposit date:2004-12-18
Release date:2005-08-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure and lytic activity of a Bacillus anthracis prophage endolysin
J.Biol.Chem., 280, 2005
2AR3
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BU of 2ar3 by Molmil
E90A mutant structure of PlyL
Descriptor: PHOSPHATE ION, ZINC ION, prophage lambdaba02, ...
Authors:Low, L.Y, Yang, C, Perego, M, Osterman, A, Liddington, R.C.
Deposit date:2005-08-19
Release date:2006-06-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and lytic activity of a Bacillus anthracis prophage endolysin.
J.Biol.Chem., 280, 2005
3Q1Q
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BU of 3q1q by Molmil
Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA
Descriptor: MAGNESIUM ION, PHOSPHATE ION, RNase P RNA, ...
Authors:Reiter, N.J, Osterman, A, Torres-Larios, A, Swinger, K.K, Pan, T, Mondragon, A.
Deposit date:2010-12-17
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA.
Nature, 468, 2010
3Q1R
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BU of 3q1r by Molmil
Crystal structure of a bacterial RNase P holoenzyme in complex with TRNA and in the presence of 5' leader
Descriptor: MAGNESIUM ION, RNase P RNA, Ribonuclease P protein component, ...
Authors:Reiter, N.J, Ostermanm, A, Torres-Larios, A, Swinger, K.K, Pan, T, Mondragon, A.
Deposit date:2010-12-17
Release date:2011-03-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (4.21 Å)
Cite:Structure of a Bacterial Ribonuclease P Holoenzyme in Complex with tRNA.
Nature, 468, 2010
1K4M
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BU of 1k4m by Molmil
Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD
Descriptor: CITRIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, NaMN adenylyltransferase
Authors:Zhang, H, Zhou, T, Kurnasov, O, Cheek, S, Grishin, N.V, Osterman, A.
Deposit date:2001-10-08
Release date:2002-10-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of E. coli nicotinate mononucleotide adenylyltransferase and its complex with deamido-NAD.
Structure, 10, 2002
1OBR
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BU of 1obr by Molmil
CARBOXYPEPTIDASE T
Descriptor: CALCIUM ION, CARBOXYPEPTIDASE T, SULFATE ION, ...
Authors:Teplyakov, A, Polyakov, K, Obmolova, G, Osterman, A.
Deposit date:1996-06-22
Release date:1997-01-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris.
Eur.J.Biochem., 208, 1992
4XQD
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BU of 4xqd by Molmil
X-ray structure analysis of xylanase-WT at pH4.0
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-19
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
4XQW
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BU of 4xqw by Molmil
X-ray structure analysis of xylanase-N44E with MES at pH6.0
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-20
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
4XPV
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BU of 4xpv by Molmil
Neutron and X-ray structure analysis of xylanase: N44D at pH6
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-18
Release date:2015-09-30
Last modified:2023-09-27
Method:NEUTRON DIFFRACTION (1.7 Å), X-RAY DIFFRACTION
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
4XQ4
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BU of 4xq4 by Molmil
X-ray structure analysis of xylanase - N44D
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
Deposit date:2015-01-19
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
6L27
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BU of 6l27 by Molmil
X-ray crystal structure of the mutant green fluorescent protein
Descriptor: Green fluorescent protein
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
6L26
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BU of 6l26 by Molmil
Neutron crystal structure of the mutant green fluorescent protein (EGFP)
Descriptor: Green fluorescent protein, trideuteriooxidanium
Authors:Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E.
Deposit date:2019-10-02
Release date:2020-04-08
Last modified:2023-11-22
Method:NEUTRON DIFFRACTION (1.444 Å)
Cite:Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein.
J Phys Chem Lett, 11, 2020
2ZWB
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BU of 2zwb by Molmil
Neutron crystal structure of wild type human lysozyme in D2O
Descriptor: Lysozyme C
Authors:Chiba-Kamoshida, K, Matsui, T, Chatake, T, Ohhara, T, Ostermann, A, Tanaka, I, Yutani, K, Niimura, N.
Deposit date:2008-12-02
Release date:2009-12-08
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (1.8 Å)
Cite:Site-specific softening of peptide bonds by localized deuterium observed by neutron crystallography of human lysozyme
To be Published
7F4X
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BU of 7f4x by Molmil
Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock 70 kDa protein 1B, MAGNESIUM ION, ...
Authors:Yokoyama, T, Ostermann, A, Schrader, T.E.
Deposit date:2021-06-21
Release date:2022-06-29
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.6 Å), X-RAY DIFFRACTION
Cite:Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP.
Iucrj, 9, 2022
4CVJ
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BU of 4cvj by Molmil
Neutron Structure of Compound I intermediate of Cytochrome c Peroxidase - Deuterium exchanged 100 K
Descriptor: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Casadei, C.M, Gumiero, A, Blakeley, M.P, Ostermann, A, Raven, E.L, Moody, P.C.E.
Deposit date:2014-03-27
Release date:2014-07-16
Last modified:2024-05-08
Method:NEUTRON DIFFRACTION (2.182 Å), X-RAY DIFFRACTION
Cite:Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase
Science, 345, 2014

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