1BON
| THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN | 分子名称: | BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6 | 著者 | Nagata, K, Hatanaka, H, Kohda, D, Inagaki, F, Structural Proteomics in Europe (SPINE) | 登録日 | 1994-07-21 | 公開日 | 1995-01-26 | 最終更新日 | 2019-12-25 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin. J.Mol.Biol., 253, 1995
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1BOM
| THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN | 分子名称: | BOMBYXIN-II,BOMBYXIN A-2, BOMBYXIN-II,BOMBYXIN A-6 | 著者 | Nagata, K, Hatanaka, H, Kohda, D, Inagaki, F. | 登録日 | 1994-07-21 | 公開日 | 1994-11-01 | 最終更新日 | 2019-12-25 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of bombyxin-II an insulin-like peptide of the silkmoth Bombyx mori: structural comparison with insulin and relaxin. J.Mol.Biol., 253, 1995
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1EQK
| SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA | 分子名称: | ORYZACYSTATIN-I | 著者 | Nagata, K, Kudo, N, Abe, K, Arai, S, Tanokura, M. | 登録日 | 2000-04-05 | 公開日 | 2001-01-10 | 最終更新日 | 2022-02-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica. Biochemistry, 39, 2000
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4HE7
| Crystal Structure of Brazzein | 分子名称: | Defensin-like protein, SODIUM ION | 著者 | Nagata, K, Hongo, N, Kameda, Y, Yamamura, A, Sasaki, H, Lee, W.C, Ishikawa, K, Suzuki, E, Tanokura, M. | 登録日 | 2012-10-03 | 公開日 | 2013-03-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana Acta Crystallogr.,Sect.D, 69, 2013
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1ZOV
| Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129 | 分子名称: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase | 著者 | Nagata, K, Sasaki, H, Ohtsuka, J, Hua, M, Okai, M, Kubota, K, Kamo, M, Ito, K, Ichikawa, T, Koyama, Y, Tanokura, M. | 登録日 | 2005-05-14 | 公開日 | 2006-05-23 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop PROC.JPN.ACAD.,SER.B, 81, 2005
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2YQY
| Crystal structure of TT2238, a four-helix bundle protein | 分子名称: | Hypothetical protein TTHA0303 | 著者 | Nagata, K, Ohtsuka, J, Iino, H, Ebihara, A, Yokoyama, S, Kuramitsu, S, Tanokura, M. | 登録日 | 2007-03-31 | 公開日 | 2008-03-04 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of TTHA0303 (TT2238), a four-helix bundle protein with an exposed histidine triad from Thermus thermophilus HB8 at 2.0 A Proteins, 70, 2008
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6KZA
| Crystal structure of the complex of the interaction domains of E. coli DnaB helicase and DnaC helicase loader | 分子名称: | DNA replication protein DnaC, Replicative DNA helicase | 著者 | Nagata, K, Okada, A, Ohtsuka, J, Ohkuri, T, Akama, Y, Sakiyama, Y, Miyazaki, E, Horita, S, Katayama, T, Ueda, T, Tanokura, M. | 登録日 | 2019-09-23 | 公開日 | 2019-11-20 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Crystal structure of the complex of the interaction domains of Escherichia coli DnaB helicase and DnaC helicase loader: structural basis implying a distortion-accumulation mechanism for the DnaB ring opening caused by DnaC binding. J.Biochem., 167, 2020
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1HRE
| SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4 | 分子名称: | HEREGULIN ALPHA | 著者 | Nagata, K, Kohda, D, Hatanaka, H, Ichikawa, S, Inagaki, F. | 登録日 | 1994-07-21 | 公開日 | 1994-10-15 | 最終更新日 | 2017-11-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4. EMBO J., 13, 1994
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1HRF
| SOLUTION STRUCTURE OF THE EPIDERMAL GROWTH FACTOR-LIKE DOMAIN OF HEREGULIN-ALPHA, A LIGAND FOR P180ERB4 | 分子名称: | HEREGULIN ALPHA | 著者 | Nagata, K, Kohda, D, Hatanaka, H, Ichikawa, S, Inagaki, F. | 登録日 | 1994-07-21 | 公開日 | 1994-10-15 | 最終更新日 | 2017-11-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the epidermal growth factor-like domain of heregulin-alpha, a ligand for p180erbB-4. EMBO J., 13, 1994
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1V46
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1Y49
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3MGF
| Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 | 分子名称: | Fluorescent protein | 著者 | Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M. | 登録日 | 2010-04-06 | 公開日 | 2011-03-16 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 To be Published
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3ZFK
| N-terminal truncated Nuclease Domain of Colicin E7 | 分子名称: | ACETATE ION, CHLORIDE ION, COLICIN-E7, ... | 著者 | Toth, E, Czene, A, Gyurcsik, B, Otten, H, Poulsen, J.-C.N, Larsen, S, Christensen, H.E.M, Nagata, K. | 登録日 | 2012-12-11 | 公開日 | 2013-12-18 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | A New Insight Into the Zinc-Dependent DNA-Cleavage by the Colicin E7 Nuclease: A Crystallographic and Computational Study. Metallomics, 6, 2014
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8WU8
| Crystal structure of the human RAD9-RAD1(F64A/M256A/F266A)-HUS1-RHINO(88-99) complex | 分子名称: | Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Checkpoint protein HUS1, ... | 著者 | Hara, K, Nagata, K, Iida, N, Hashimoto, H. | 登録日 | 2023-10-20 | 公開日 | 2024-02-14 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (2.81 Å) | 主引用文献 | Structural basis for intra- and intermolecular interactions on RAD9 subunit of 9-1-1 checkpoint clamp implies functional 9-1-1 regulation by RHINO. J.Biol.Chem., 300, 2024
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1R5Z
| Crystal Structure of Subunit C of V-ATPase | 分子名称: | V-type ATP synthase subunit C | 著者 | Iwata, M, Imamura, H, Stambouli, E, Ikeda, C, Tamakoshi, M, Nagata, K, Makyio, H, Hankamer, B, Barber, J, Yoshida, M, Yokoyama, K, Iwata, S. | 登録日 | 2003-10-14 | 公開日 | 2004-01-13 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase. Proc.Natl.Acad.Sci.Usa, 101, 2004
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4TMC
| CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588 COMPLEXED with P-HYDROXYBENZALDEHYDE | 分子名称: | FLAVIN MONONUCLEOTIDE, Old yellow enzyme, P-HYDROXYBENZALDEHYDE | 著者 | Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M. | 登録日 | 2014-05-31 | 公開日 | 2015-02-11 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System Chembiochem, 16, 2015
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4TMB
| CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588 | 分子名称: | FLAVIN MONONUCLEOTIDE, Old yellow enzyme | 著者 | Horita, S, Kataoka, M, Kitamura, N, Nakagawa, T, Miyakawa, T, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M. | 登録日 | 2014-05-31 | 公開日 | 2015-02-11 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | An Engineered Old Yellow Enzyme that Enables Efficient Synthesis of (4R,6R)-Actinol in a One-Pot Reduction System Chembiochem, 16, 2015
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7VQ0
| Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. | 登録日 | 2021-10-18 | 公開日 | 2022-07-20 | 実験手法 | ELECTRON MICROSCOPY (3.03 Å) | 主引用文献 | A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
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7VPY
| Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2 | 分子名称: | 1,2-ETHANEDIOL, Nanobody, SULFATE ION | 著者 | Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. | 登録日 | 2021-10-18 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
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8GNN
| Crystal structure of the human RAD9-RAD1-HUS1-RAD17 complex | 分子名称: | Cell cycle checkpoint control protein RAD9A, Cell cycle checkpoint protein RAD1, Cell cycle checkpoint protein RAD17, ... | 著者 | Hara, K, Nagata, K, Iida, N, Hashimoto, H. | 登録日 | 2022-08-24 | 公開日 | 2023-03-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.119 Å) | 主引用文献 | The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO. J.Biol.Chem., 299, 2023
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3LNQ
| Structure of Aristaless homeodomain in complex with DNA | 分子名称: | 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', ACETATE ION, ... | 著者 | Takamura, Y, Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M. | 登録日 | 2010-02-02 | 公開日 | 2010-04-28 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless Embo J., 29, 2010
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7W3W
| X-ray structure of apo-VmFbpA, a ferric ion-binding protein from Vibrio metschnikovii | 分子名称: | Iron-utilization periplasmic protein | 著者 | Lu, P, Sui, M, Zhang, M, Nagata, K. | 登録日 | 2021-11-26 | 公開日 | 2021-12-15 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.858 Å) | 主引用文献 | Rosmarinic Acid and Sodium Citrate Have a Synergistic Bacteriostatic Effect against Vibrio Species by Inhibiting Iron Uptake. Int J Mol Sci, 22, 2021
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3LQB
| Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio | 分子名称: | 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ... | 著者 | Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I. | 登録日 | 2010-02-08 | 公開日 | 2010-09-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio J.Mol.Biol., 402, 2010
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3GQB
| Crystal Structure of the A3B3 complex from V-ATPase | 分子名称: | V-type ATP synthase alpha chain, V-type ATP synthase beta chain | 著者 | Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K. | 登録日 | 2009-03-24 | 公開日 | 2009-11-24 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus. Embo J., 28, 2009
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3A76
| The crystal structure of LinA | 分子名称: | GLYCEROL, Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE | 著者 | Okai, M, Kubota, K, Fukuda, M, Nagata, Y, Nagata, K, Tanokura, M. | 登録日 | 2009-09-15 | 公開日 | 2010-09-15 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26 J.Mol.Biol., 2010
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