1ZLB
 
 | | Crystal structure of catalytically-active phospholipase A2 in the absence of calcium | | 分子名称: | hypotensive phospholipase A2 | | 著者 | Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K. | | 登録日 | 2005-05-05 | | 公開日 | 2006-04-25 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (0.97 Å) | | 主引用文献 | Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
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1ZL7
 | | Crystal structure of catalytically-active phospholipase A2 with bound calcium | | 分子名称: | CALCIUM ION, GLYCEROL, hypotensive phospholipase A2 | | 著者 | Murakami, M.T, Cintra, A.C, Gabdoulkhakov, A, Genov, N, Betzel, C, Arni, R.K. | | 登録日 | 2005-05-05 | | 公開日 | 2006-04-25 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Insights into metal ion binding in phospholipases A(2): ultra high-resolution crystal structures of an acidic phospholipase A(2) in the Ca(2+) free and bound states.
Biochimie, 88, 2006
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2AIQ
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2AIP
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2F9R
 | | Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom | | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Sphingomyelinase D 1 | | 著者 | Murakami, M.T, Gabdoulkhakov, A, Fernandes-Pedrosa, M.F, Betzel, C, Tambourgi, D.V, Arni, R.K. | | 登録日 | 2005-12-06 | | 公開日 | 2006-06-27 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | | 主引用文献 | Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases D.
J.Biol.Chem., 280, 2005
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2H8I
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2H8U
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2H9E
 | | Crystal Structure of FXa/selectide/NAPC2 ternary complex | | 分子名称: | ACETATE ION, Anti-coagulant protein C2, Coagulation factor X heavy chain, ... | | 著者 | Murakami, M.T, Geiger, G, Tulinsky, A, Arni, R.K. | | 登録日 | 2006-06-09 | | 公開日 | 2007-02-13 | | 最終更新日 | 2017-10-18 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Intermolecular Interactions and Characterization of the Novel Factor Xa Exosite Involved in Macromolecular Recognition and Inhibition: Crystal Structure of Human Gla-domainless Factor Xa Complexed with the Anticoagulant Protein NAPc2 from the Hematophagous Nematode Ancylostoma caninum.
J.Mol.Biol., 366, 2007
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1UMR
 | | Crystal structure of the platelet activator convulxin, a disulfide linked a4b4 cyclic tetramer from the venom of Crotalus durissus terrificus | | 分子名称: | CONVULXIN ALPHA, CONVULXIN BETA | | 著者 | Murakami, M.T, Zela, S.P, Gava, L.M, Michelan-Duarte, S, Cintra, A.C.O, Arni, R.K. | | 登録日 | 2003-08-28 | | 公開日 | 2003-11-21 | | 最終更新日 | 2023-12-13 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal Structure of the Platelet Activator Convulxin, a Disulfide Linked A4B4 Cyclic Tetramer from the Venom of Crotalus Durissus Terrificus
Biochem.Biophys.Res.Commun., 310, 2003
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1XX1
 | | Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D | | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ... | | 著者 | Murakami, M.T, Tambourgi, D.V, Arni, R.K. | | 登録日 | 2004-11-03 | | 公開日 | 2005-01-18 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | | 主引用文献 | Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases d
J.Biol.Chem., 280, 2005
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2PH4
 | | Crystal structure of a novel Arg49 phospholipase A2 homologue from Zhaoermia mangshanensis venom | | 分子名称: | DI(HYDROXYETHYL)ETHER, SULFATE ION, Zhaoermiatoxin | | 著者 | Murakami, M.T, Kuch, U, Mebs, D, Arni, R.K. | | 登録日 | 2007-04-10 | | 公開日 | 2008-03-18 | | 最終更新日 | 2023-08-30 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | Crystal structure of a novel myotoxic Arg49 phospholipase A(2) homolog (zhaoermiatoxin) from Zhaoermia mangshanensis snake venom: Insights into Arg49 coordination and the role of Lys122 in the polarization of the C-terminus.
Toxicon, 51, 2008
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1XXN
 | | Crystal structure of a mesophilic xylanase A from Bacillus subtilis 1A1 | | 分子名称: | Endo-1,4-beta-xylanase A, S,R MESO-TARTARIC ACID | | 著者 | Murakami, M.T, Ruller, R, Ward, R.J, Arni, R.K. | | 登録日 | 2004-11-07 | | 公開日 | 2005-10-18 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Correlation of temperature induced conformation change with optimum catalytic activity in the recombinant G/11 xylanase A from Bacillus subtilis strain 168 (1A1).
Febs Lett., 579, 2005
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1Y4L
 | | Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin | | 分子名称: | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, ISOPROPYL ALCOHOL, ... | | 著者 | Murakami, M.T, Arruda, E.Z, Melo, P.A, Martinez, A.B, Calil-Elias, S, Tomaz, M.A, Lomonte, B, Gutierrez, J.M, Arni, R.K. | | 登録日 | 2004-12-01 | | 公開日 | 2005-06-28 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Inhibition of Myotoxic Activity of Bothrops asper Myotoxin II by the Anti-trypanosomal Drug Suramin.
J.Mol.Biol., 350, 2005
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4E2D
 | | Structure of the old yellow enzyme from Trypanosoma cruzi | | 分子名称: | DIMETHYL SULFOXIDE, FLAVIN MONONUCLEOTIDE, Old Yellow Protein | | 著者 | Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C. | | 登録日 | 2012-03-08 | | 公開日 | 2013-03-27 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (1.997 Å) | | 主引用文献 | High resolution crystal structure and in solution studies of the Old Yellow Enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
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4E2B
 | | High resolution crystal structure of the old yellow enzyme from Trypanosoma cruzi | | 分子名称: | DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... | | 著者 | Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C. | | 登録日 | 2012-03-08 | | 公開日 | 2013-03-27 | | 最終更新日 | 2023-09-13 | | 実験手法 | X-RAY DIFFRACTION (1.269 Å) | | 主引用文献 | High resolution crystal structure and in solution studies of the old yellow enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
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2AOZ
 | | Crystal structure of the myotoxin-II from Atropoides nummifer venom | | 分子名称: | Phospholipase A2 homolog, SULFATE ION | | 著者 | Melo, C.C, Murakami, M.T, Angulo, Y, Lomonte, B, Arni, R.K. | | 登録日 | 2005-08-15 | | 公開日 | 2006-07-25 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (2.08 Å) | | 主引用文献 | Structure of myotoxin II, a catalytically inactive Lys49 phospholipase A2 homologue from Atropoides nummifer venom.
Acta Crystallogr.,Sect.F, 62, 2006
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1UMV
 | | Crystal structure of an acidic, non-myotoxic phospholipase A2 from the venom of Bothrops jararacussu | | 分子名称: | CALCIUM ION, HYPOTENSIVE PHOSPHOLIPASE A2 | | 著者 | Murakami, M.T, Watanabe, L, Cintra, A.C.O, Arni, R.K. | | 登録日 | 2003-08-28 | | 公開日 | 2003-09-18 | | 最終更新日 | 2023-12-13 | | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | | 主引用文献 | Crystal Structure of an Acidic Platelet Aggregation Inhibitor and Hypotensive Phospholipase A(2) in the Monomeric and Dimeric States: Insights Into its Oligomeric State
Biochem.Biophys.Res.Commun., 323, 2004
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5KB6
 | | High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine | | 分子名称: | ACETATE ION, ADENOSINE, Adenosine kinase, ... | | 著者 | Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G. | | 登録日 | 2016-06-02 | | 公開日 | 2017-06-07 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | | 主引用文献 | High-resolution structure of the adenosine kinase from Mus musculus in complex with adenosine
To Be Published
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5KB5
 | | Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate | | 分子名称: | ADENOSINE, ADENOSINE-5'-DIPHOSPHATE, Adenosine kinase, ... | | 著者 | Oliveira, R.R, Neto, R.M, Polo, C.C, Tonoli, C.C.C, Murakami, M.T, Franchini, K.G. | | 登録日 | 2016-06-02 | | 公開日 | 2017-06-07 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
To Be Published
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8D89
 | | Crystal structure of a novel GH5 enzyme retrieved from capybara gut metagenome | | 分子名称: | 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, ACETATE ION, CHLORIDE ION, ... | | 著者 | Martins, M.P, Morais, M.A.B, Murakami, M.T. | | 登録日 | 2022-06-08 | | 公開日 | 2022-11-02 | | 最終更新日 | 2022-11-16 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-beta-mannans.
Acta Crystallogr D Struct Biol, 78, 2022
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6MS2
 | | Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis | | 分子名称: | CALCIUM ION, Glycoside Hydrolase Family 43 | | 著者 | Zanphorlin, L.M, Morais, M.A.B, Diogo, J.A, Murakami, M.T. | | 登録日 | 2018-10-16 | | 公開日 | 2019-04-17 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (2.494 Å) | | 主引用文献 | Structure-guided design combined with evolutionary diversity led to the discovery of the xylose-releasing exo-xylanase activity in the glycoside hydrolase family 43.
Biotechnol. Bioeng., 116, 2019
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6NDQ
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3GBO
 | | Crystal structure of BmooMPalpha-I, a non-hemorrhagic metalloproteinase isolated from Bothrops moojeni snake venom | | 分子名称: | CALCIUM ION, ZINC ION, Zinc metalloproteinase BmooMPalfa-I | | 著者 | Akao, P.K, Tonoli, C.C.C, Murakami, M.T. | | 登録日 | 2009-02-20 | | 公開日 | 2009-09-22 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | | 主引用文献 | Structural studies of BmooMPalpha-I, a non-hemorrhagic metalloproteinase from Bothrops moojeni venom.
Toxicon, 55, 2010
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3KVE
 | | Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase, ... | | 著者 | Gergiova, D, Murakami, M.T, Perbandt, M, Arni, R.K, Betzel, C. | | 登録日 | 2009-11-30 | | 公開日 | 2010-10-13 | | 最終更新日 | 2023-09-06 | | 実験手法 | X-RAY DIFFRACTION (2.57 Å) | | 主引用文献 | Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
To be Published
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4RW3
 | | Structural insights into substrate binding of brown spider venom class II phospholipases D | | 分子名称: | D-MYO-INOSITOL-1-PHOSPHATE, DECANOIC ACID, DI(HYDROXYETHYL)ETHER, ... | | 著者 | Coronado, M.A, Ullah, A, da Silva, L.S, Chaves-Moreira, D, Vuitika, L, Chaim, O.M, Veiga, S.S, Chahine, J, Murakami, M.T, Arni, R.K. | | 登録日 | 2014-12-01 | | 公開日 | 2015-06-03 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (1.72 Å) | | 主引用文献 | Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.
Curr Protein Pept Sci, 16, 2015
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