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7VTJ
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BU of 7vtj by Molmil
The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
Descriptor: Heavy chain of Fab, Light chain of Fab, VQIIYK peptide
Authors:Tsuchida, T, Fukuhara, N, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, Y, Ishida, T, Tomoo, K.
Deposit date:2021-10-29
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
To Be Published
7W8F
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BU of 7w8f by Molmil
Crystal structure of siderophore binding protein VatD from Vibrio vulnificus M2799 complexed with Desferal
Descriptor: FE (III) ION, MAGNESIUM ION, Putative periplasm binding protein, ...
Authors:Tomoo, K, Miyamoto, K.
Deposit date:2021-12-07
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of siderophore binding protein VatD from Vibrio vulnificus M2799 complexed with Desferal
To Be Published
7EQ9
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BU of 7eq9 by Molmil
Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)
Descriptor: TIP60
Authors:Obata, J, Kawakami, N, Tsutsumi, A, Miyamoto, K, Kikkawa, M, Arai, R.
Deposit date:2021-04-30
Release date:2021-09-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60.
Chem.Commun.(Camb.), 57, 2021
7FGK
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BU of 7fgk by Molmil
The Fab antibody single structure against tau protein.
Descriptor: Fab Heavy Chain, Fab Light Chain, GLYCEROL, ...
Authors:Tsuchida, T, Susa, K, Kibiki, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The free structure of the Fab domain of antibody that recognizes the PHF core region VQIINK in Tau protein.
To Be Published
7FGJ
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BU of 7fgj by Molmil
The cross-reaction complex structure with VQILNK peptide and the tau antibody's Fab domain.
Descriptor: CHLORIDE ION, Fab Heavy Chain, Fab Light Chain, ...
Authors:Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The cross-reaction complex structure with VQILNK peptide and the antibody's Fab domain.
To Be Published
7FGR
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BU of 7fgr by Molmil
The cross-reaction complex structure with VQIFNK peptide and the tau antibody's Fab domain.
Descriptor: AMMONIUM ION, CHLORIDE ION, Fab Heavy Chain, ...
Authors:Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The cross-reaction complex structure with VQIFNK peptide and the tau antibody's Fab domain.
To Be Published
2YUP
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BU of 2yup by Molmil
Solution structure of the second SH3 domain of human Vinexin
Descriptor: Vinexin
Authors:Abe, H, Tochio, N, Miyamoto, K, Saito, K, Sasagawa, A, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the second SH3 domain of human Vinexin
To be Published
2YUM
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BU of 2yum by Molmil
Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
Descriptor: Zinc finger ZZ-type-containing protein 3
Authors:Abe, H, Tochio, N, Miyamoto, K, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
To be Published
2YUU
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BU of 2yuu by Molmil
Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta
Descriptor: Protein kinase C delta type, ZINC ION
Authors:Abe, H, Miyamoto, K, Tochio, N, Saito, K, Sasagawa, A, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the first Phorbol esters/diacylglycerol binding domain of human Protein kinase C, delta
To be Published
2YUO
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BU of 2yuo by Molmil
Solution structure of the SH3 domain of mouse RUN and TBC1 domain containing 3
Descriptor: RUN and TBC1 domain containing 3
Authors:Abe, H, Tochio, N, Miyamoto, K, Saito, K, Sasagawa, A, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of mouse RUN and TBC1 domain containing 3
To be Published
1WRY
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BU of 1wry by Molmil
Solution structure of the SH3 domain-binding glutamic acid-rich-like protein
Descriptor: SH3 domain-binding glutamic acid-rich-like protein
Authors:Inoue, K, Miyamoto, K, Nagashima, T, Hayashi, F, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-29
Release date:2005-04-29
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain-binding glutamic acid-rich-like protein
To be Published
3VXC
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BU of 3vxc by Molmil
Crystal Structure of Xylobiose-BxlE complex from Streptomyces thermoviolaceus OPC-520
Descriptor: Putative sugar-binding lipoprotein, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Tomoo, K, Ishida, T, Miyamoto, K, Tsujibo, H.
Deposit date:2012-09-11
Release date:2013-09-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Xylooligosaccharide-Binding Protein from Streptomyces thermoviolaceus OPC-520: Dramatic Conformational Change with Ligand binding
To be published
3VXB
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BU of 3vxb by Molmil
Crystal Structure of BxlE from Streptomyces thermoviolaceus OPC-520
Descriptor: GLYCEROL, Putative sugar-binding lipoprotein
Authors:Tomoo, K, Ishida, T, Miyamoto, K, Tsujibo, H.
Deposit date:2012-09-11
Release date:2013-09-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Xylooligosaccharide-Binding Protein from Streptomyces thermoviolaceus OPC-520: Dramatic Conformational Change with Ligand binding
To be published
2YUN
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BU of 2yun by Molmil
Solution structure of the SH3 domain of human Nostrin
Descriptor: Nostrin
Authors:Abe, H, Tochio, N, Miyamoto, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of human Nostrin
To be Published
2YUQ
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BU of 2yuq by Molmil
Solution structure of the SH3 domain of human Tyrosine-protein kinase ITK/TSK
Descriptor: Tyrosine-protein kinase ITK/TSK
Authors:Abe, H, Miyamoto, K, Tochio, N, Sato, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of human Tyrosine-protein kinase ITK/TSK
To be Published
2YUK
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BU of 2yuk by Molmil
Solution structure of the HMG box of human Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
Descriptor: Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
Authors:Abe, H, Tochio, N, Miyamoto, K, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the HMG box of human Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
To be Published
2YUL
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BU of 2yul by Molmil
Solution structure of the HMG box of human Transcription factor SOX-17
Descriptor: Transcription factor SOX-17
Authors:Abe, H, Tochio, N, Miyamoto, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the HMG box of human Transcription factor SOX-17
To be Published
2YUR
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BU of 2yur by Molmil
Solution structure of the Ring finger of human Retinoblastoma-binding protein 6
Descriptor: Retinoblastoma-binding protein 6, ZINC ION
Authors:Abe, H, Miyamoto, K, Tochio, N, Tomizawa, T, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the Ring finger of human Retinoblastoma-binding protein 6
To be Published
3EIS
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BU of 3eis by Molmil
Crystal Structure of Arylmalonate Decarboxylase
Descriptor: Arylmalonate decarboxylase, GLYCEROL, SULFATE ION
Authors:Nakasako, M, Obata, R, Miyamoto, K, Ohta, H.
Deposit date:2008-09-17
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase
To be Published
1WJI
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BU of 1wji by Molmil
Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3
Descriptor: Tudor domain containing protein 3
Authors:Kamatari, Y.O, Tochio, N, Nakanishi, T, Miyamoto, K, Li, H, Kobayashi, N, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-29
Release date:2004-11-29
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of the UBA Domain of Human Tudor Domain Containing Protein 3
To be Published
2ECZ
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BU of 2ecz by Molmil
Solution structure of the SH3 domain of Sorbin and SH3 domain-containing protein 1
Descriptor: Sorbin and SH3 domain-containing protein 1
Authors:Abe, H, Miyamoto, K, Tochio, N, Saito, K, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2008-02-26
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of Sorbin and SH3 domain-containing protein 1
To be Published
2ED1
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BU of 2ed1 by Molmil
Solution structure of the SH3 domain of 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein
Descriptor: 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein
Authors:Abe, H, Tochio, N, Miyamoto, K, Saito, K, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2008-02-26
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein
To be Published
2ED0
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BU of 2ed0 by Molmil
Solution structure of the SH3 domain of Abl interactor 2 (Abelson interactor 2)
Descriptor: Abl interactor 2
Authors:Abe, H, Tochio, N, Miyamoto, K, Saito, K, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2008-02-26
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of Abl interactor 2 (Abelson interactor 2)
To be Published
2DAN
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BU of 2dan by Molmil
The solution structure of the MYND domain (LEU384-CYS430) of human Zinc finger MYND domain containing protein 10
Descriptor: ZINC ION, Zinc finger MYND domain containing protein 10
Authors:Sasagawa, A, Miyamoto, K, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-14
Release date:2006-06-14
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution structure of the MYND domain (LEU384-CYS430) of human Zinc finger MYND domain containing protein 10
To be Published
2ECW
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BU of 2ecw by Molmil
Solution structure of the Zinc finger, C3HC4 type (RING finger) domain Tripartite motif protein 30
Descriptor: Tripartite motif-containing protein 30, ZINC ION
Authors:Abe, H, Miyamoto, K, Tochio, N, Yoneyama, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-14
Release date:2008-02-26
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Solution structure of the Zinc finger, C3HC4 type (RING finger) domain Tripartite motif protein 30
To be Published

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