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1XAR
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BU of 1xar by Molmil
Crystal Structure of a fragment of DC-SIGNR (containing the carbohydrate recognition domain and two repeats of the neck).
Descriptor: CD209 antigen-like protein 1, SODIUM ION
Authors:Feinberg, H, Guo, Y, Mitchell, D.A, Drickamer, K, Weis, W.I.
Deposit date:2004-08-26
Release date:2004-11-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Extended Neck Regions Stabilize Tetramers of the Receptors DC-SIGN and DC-SIGNR
J.Biol.Chem., 280, 2005
8T19
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BU of 8t19 by Molmil
RiPP precursor peptide recognition element (RRE) domain of Ocin-ThiF-like partner protein, PbtF, bound to an 8 residue fragment of its precursor peptide, PbtA
Descriptor: MAGNESIUM ION, PbtA, PbtF
Authors:Cogan, D.P, Nair, S.K, Mitchell, D.A.
Deposit date:2023-06-02
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Discovery and validation of RRE domains
To Be Published
1K9J
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BU of 1k9j by Molmil
Complex of DC-SIGNR and GlcNAc2Man3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, CALCIUM ION, mDC-SIGN2 TYPE I ISOFORM
Authors:Feinberg, H, Mitchell, D.A, Drickamer, K, Weis, W.I.
Deposit date:2001-10-29
Release date:2001-12-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for selective recognition of oligosaccharides by DC-SIGN and DC-SIGNR.
Science, 294, 2001
1K9I
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BU of 1k9i by Molmil
Complex of DC-SIGN and GlcNAc2Man3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, CALCIUM ION, mDC-SIGN1B type I isoform
Authors:Feinberg, H, Mitchell, D.A, Drickamer, K, Weis, W.I.
Deposit date:2001-10-29
Release date:2001-12-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for selective recognition of oligosaccharides by DC-SIGN and DC-SIGNR.
Science, 294, 2001
7JS6
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BU of 7js6 by Molmil
Solution NMR structure of des-citrulassin F
Descriptor: des-citrulassin F
Authors:Harris, L.A, Mitchell, D.A.
Deposit date:2020-08-13
Release date:2020-12-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Reactivity-Based Screening for Citrulline-Containing Natural Products Reveals a Family of Bacterial Peptidyl Arginine Deiminases.
Acs Chem.Biol., 15, 2020
5JPL
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BU of 5jpl by Molmil
LP2006, a handcuff-topology lasso peptide antibiotic
Descriptor: Uncharacterized protein
Authors:Tietz, J.I, Schwalen, C.J, Blair, P.M, Zakai, U.I, Mitchell, D.A.
Deposit date:2016-05-03
Release date:2017-03-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A new genome-mining tool redefines the lasso peptide biosynthetic landscape.
Nat. Chem. Biol., 13, 2017
6F1H
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BU of 6f1h by Molmil
C1rC1s complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-galactopyranose-(1-4)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Almitairi, J.O.M, Venkatraman Girija, U, Furze, C.M, Simpson-Gray, X, Badakshi, F, Marshall, J.E, Mitchell, D.A, Moody, P.C.E, Wallis, R.
Deposit date:2017-11-22
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structure of the C1r-C1s interaction of the C1 complex of complement activation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6F1C
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BU of 6f1c by Molmil
C1rC1s complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Complement C1r subcomponent, ...
Authors:Almitairi, J.O.M, Venkatraman Girija, U, Furze, C.M, Simpson-Gray, X, Badakshi, F, Marshall, J.E, Mitchell, D.A, Moody, P.C.E, Wallis, R.
Deposit date:2017-11-21
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of the C1r-C1s interaction of the C1 complex of complement activation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6F39
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BU of 6f39 by Molmil
C1r homodimer CUB1-EGF-CUB2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Complement C1r subcomponent, ...
Authors:Almitairi, J.O.M, Venkatraman Girija, U, Furze, C.M, Simpson-Gray, X, Badakshi, F, Marshall, J.E, Mitchell, D.A, Moody, P.C.E, Wallis, R.
Deposit date:2017-11-28
Release date:2018-01-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (5.801 Å)
Cite:Structure of the C1r-C1s interaction of the C1 complex of complement activation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1SL5
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BU of 1sl5 by Molmil
Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with LNFP III (Dextra L504).
Descriptor: CALCIUM ION, MAGNESIUM ION, alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose, ...
Authors:Guo, Y, Feinberg, H, Conroy, E, Mitchell, D.A, Alvarez, R, Blixt, O, Taylor, M.E, Weis, W.I, Drickamer, K.
Deposit date:2004-03-05
Release date:2004-06-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR
Nat.Struct.Mol.Biol., 11, 2004
1SL4
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BU of 1sl4 by Molmil
Crystal Structure of DC-SIGN carbohydrate recognition domain complexed with Man4
Descriptor: CALCIUM ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose, mDC-SIGN1B type I isoform
Authors:Guo, Y, Feinberg, H, Conroy, E, Mitchell, D.A, Alvarez, R, Blixt, O, Taylor, M.E, Weis, W.I, Drickamer, K.
Deposit date:2004-03-05
Release date:2004-06-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR
Nat.Struct.Mol.Biol., 11, 2004
6F1D
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BU of 6f1d by Molmil
CUB2 domain of C1r
Descriptor: CALCIUM ION, Complement C1r subcomponent, SODIUM ION
Authors:Almitairi, J.O.M, Venkatraman Girija, U, Furze, C.M, Simpson-Gray, X, Badakshi, F, Marshall, J.E, Mitchell, D.A, Moody, P.C.E, Wallis, R.
Deposit date:2017-11-21
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the C1r-C1s interaction of the C1 complex of complement activation.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1SL6
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BU of 1sl6 by Molmil
Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Descriptor: C-type lectin DC-SIGNR, CALCIUM ION, alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Guo, Y, Feinberg, H, Conroy, E, Mitchell, D.A, Alvarez, R, Blixt, O, Taylor, M.E, Weis, W.I, Drickamer, K.
Deposit date:2004-03-05
Release date:2004-06-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR
Nat.Struct.Mol.Biol., 11, 2004
2MW3
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BU of 2mw3 by Molmil
Solution NMR structure of the lasso peptide streptomonomicin
Descriptor: Lasso peptide
Authors:Tietz, J.I, Zhu, L, Mitchell, D.A, Metelev, M, Melby, J.O, Blair, P.M, Livnat, I, Severinov, K.
Deposit date:2014-10-24
Release date:2015-01-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure, bioactivity, and resistance mechanism of streptomonomicin, an unusual lasso Peptide from an understudied halophilic actinomycete.
Chem.Biol., 22, 2015
5WA3
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BU of 5wa3 by Molmil
Pyridine synthase, TbtD, from thiomuracin biosynthesis
Descriptor: Pyridine synthase TbtD
Authors:Cogan, D.P, Nair, S.K.
Deposit date:2017-06-24
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into enzymatic [4+2] aza-cycloaddition in thiopeptide antibiotic biosynthesis.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4H2M
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BU of 4h2m by Molmil
Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1408
Descriptor: 2,2'-{benzene-1,3-diylbis[ethyne-2,1-diyl(5-bromobenzene-3,1-diyl)]}diethanamine, Undecaprenyl pyrophosphate synthase
Authors:Zhu, W, Oldfield, E.
Deposit date:2012-09-12
Release date:2012-12-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Antibacterial drug leads targeting isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4H3A
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BU of 4h3a by Molmil
Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1330
Descriptor: (2Z)-2-hydroxy-4-[4-(octyloxy)phenyl]-4-oxobut-2-enoic acid, Undecaprenyl pyrophosphate synthase
Authors:Zhu, W, Oldfield, E.
Deposit date:2012-09-13
Release date:2012-12-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Antibacterial drug leads targeting isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4H2O
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BU of 4h2o by Molmil
Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1248
Descriptor: 2-{[3-(decyloxy)benzoyl]amino}-5-nitrobenzoic acid, Undecaprenyl pyrophosphate synthase
Authors:Zhu, W, Oldfield, E.
Deposit date:2012-09-13
Release date:2012-12-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Antibacterial drug leads targeting isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
8GF5
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BU of 8gf5 by Molmil
McrD binds asymmetrically to methyl-coenzyme M reductase improving active site accessibility during assembly
Descriptor: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
Authors:Joiner, A.M.N, Chadwick, G.L, Nayak, D.D.
Deposit date:2023-03-07
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3 Å)
Cite:McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
8GF6
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BU of 8gf6 by Molmil
Apo-apo MCR assembly intermediate
Descriptor: Methyl coenzyme M reductase, subunit D, Methyl-coenzyme M reductase subunit alpha, ...
Authors:Joiner, A.M.N, Chadwick, G.L, Nayak, D.D.
Deposit date:2023-03-07
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EJY
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BU of 8ejy by Molmil
[4+2] Aza-Cyclase F293A variant
Descriptor: PbtD
Authors:Nair, S.K.
Deposit date:2022-09-19
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Enzymatic Pyridine Aromatization during Thiopeptide Biosynthesis.
J.Am.Chem.Soc., 144, 2022
8EJZ
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BU of 8ejz by Molmil
[4+2] Aza-Cyclase Y293F variant
Descriptor: PbtD
Authors:Nair, S.K.
Deposit date:2022-09-19
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enzymatic Pyridine Aromatization during Thiopeptide Biosynthesis.
J.Am.Chem.Soc., 144, 2022
6PEU
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BU of 6peu by Molmil
Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLY-ARG-LEU-GLY-PHE-TYR-GLY-TYR-ASP-LEU-GLN-ASP, MAGNESIUM ION, ...
Authors:Dong, S.-H, Nair, S.K.
Deposit date:2019-06-20
Release date:2019-11-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanistic Basis for Ribosomal Peptide Backbone Modifications.
Acs Cent.Sci., 5, 2019
6PE3
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BU of 6pe3 by Molmil
Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Uncharacterized protein MJ1094
Authors:Dong, S.-H, Nair, S.K.
Deposit date:2019-06-19
Release date:2020-01-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic Basis for Ribosomal Peptide Backbone Modifications.
Acs Cent.Sci., 5, 2019
4H2J
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BU of 4h2j by Molmil
Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1354
Descriptor: N~4~-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]-N~1~-[4-(1H-imidazol-2-yl)phenyl]-2-nitrobenzene-1,4-dicarboxamide, Undecaprenyl pyrophosphate synthase
Authors:Zhu, W, Oldfield, E.
Deposit date:2012-09-12
Release date:2012-12-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Antibacterial drug leads targeting isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

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