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3A2V
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BU of 3a2v by Molmil
Peroxiredoxin (C207S) from Aeropyrum pernix K1 complexed with hydrogen peroxide
分子名称: PEROXIDE ION, Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, F, Ishikawa, K, Matsumura, H, Inoue, T.
登録日2009-06-04
公開日2009-10-27
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A3N
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BU of 3a3n by Molmil
Crystal structure of complex between SA-subtilisin and Tk-propeptide with deletion of the two C-terminal residues
分子名称: CALCIUM ION, Tk-subtilisin, ZINC ION
著者Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2009-06-15
公開日2009-08-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin
J.Mol.Biol., 394, 2009
3A5W
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BU of 3a5w by Molmil
Peroxiredoxin (wild type) from Aeropyrum pernix K1 (reduced form)
分子名称: Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, T, Matsumura, H, Ishikawa, K, Inoue, T.
登録日2009-08-12
公開日2009-10-27
最終更新日2014-01-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3A3P
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BU of 3a3p by Molmil
Crystal structure of complex between E201A/SA-subtilisin and Tk-propeptide
分子名称: CALCIUM ION, Tk-subtilisin, ZINC ION
著者Tanaka, S, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2009-06-15
公開日2009-08-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin
J.Mol.Biol., 394, 2009
3A6Z
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BU of 3a6z by Molmil
Crystal structure of Pseudomonas sp. MIS38 lipase (PML) in the open conformation following dialysis against Ca-free buffer
分子名称: CALCIUM ION, Lipase
著者Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2009-09-10
公開日2010-05-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
3A2X
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BU of 3a2x by Molmil
Peroxiredoxin (C50S) from Aeropyrum pernix K1 (acetate-bound form)
分子名称: ACETATE ION, Probable peroxiredoxin
著者Nakamura, T, Kado, Y, Yamaguchi, F, Matsumura, H, Ishikawa, K, Inoue, T.
登録日2009-06-04
公開日2009-10-27
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide
J.Biochem., 147, 2010
3ATZ
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BU of 3atz by Molmil
Crystal structure of TcOYE with pHBA
分子名称: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Prostaglandin F2a synthase
著者Okamoto, N, Yamaguchi, K, Mizohata, E, Tokuoka, K, Uchiyama, N, Sugiyama, S, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2012-02-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3ATY
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BU of 3aty by Molmil
Crystal structure of TcOYE
分子名称: FLAVIN MONONUCLEOTIDE, Prostaglandin F2a synthase
著者Yamaguchi, K, Okamoto, N, Tokuoka, K, Sugiyama, S, Uchiyama, N, Matsumura, H, Inaka, K, Urade, Y, Inoue, T.
登録日2011-01-26
公開日2011-05-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insight into the stereoselective production of PGF2(alpha) by Old Yellow Enzyme from Trypanosoma cruzi
J.Biochem., 150, 2011
3B4X
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BU of 3b4x by Molmil
Crystal Structure Analysis of Sulfolobus tokodaii strain7 cytochrom P450
分子名称: 367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
著者Kamitori, S, Yoshida, H, Ohtaki, A, Nakamura, N.
登録日2007-10-24
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner
To be Published
5NEN
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BU of 5nen by Molmil
Crystal structure of the soluble domain of LipC, a membrane fusion protein of a type I secretion system
分子名称: Lipase C
著者Murata, D, Akutsu, M, Takano, K.
登録日2017-03-11
公開日2017-11-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain.
Biochemistry, 56, 2017
3FX5
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BU of 3fx5 by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by High Resolution X-ray Crystallography
分子名称: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, GLYCEROL, protease
著者Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
登録日2009-01-20
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.93 Å)
主引用文献Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
8JL8
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BU of 8jl8 by Molmil
Crystal structure of the collagen binding domain of Cnm from Streptococcus mutans
分子名称: Collagen-binding adhesin, GLYCEROL, SULFATE ION
著者Tanaka, S.-i, Hirata, A, Takano, K.
登録日2023-06-02
公開日2024-04-10
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structure, Stability and Binding Properties of Collagen-Binding Domains from Streptococcus mutans.
Chemistry, 5, 2023
5IQW
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BU of 5iqw by Molmil
1.95A resolution structure of Apo HasAp (R33A) from Pseudomonas aeruginosa
分子名称: ACETATE ION, CADMIUM ION, Heme acquisition protein HasAp
著者Kumar, R, Lovell, S, Battaile, K.P, Yao, H, Rivera, M.
登録日2016-03-11
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein.
Biochemistry, 55, 2016
5IQX
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BU of 5iqx by Molmil
1.05A resolution structure of Holo HasAp (R33A) from Pseudomonas aeruginosa
分子名称: D-MALATE, Heme acquisition protein HasAp, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Kumar, R, Lovell, S, Battaile, K.P, Yao, H, Rivera, M.
登録日2016-03-11
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein.
Biochemistry, 55, 2016
4JES
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BU of 4jes by Molmil
1.6A resolution Apo structure of the hemophore HasA from Yersinia pestis (Hexagonal Form)
分子名称: HEXAETHYLENE GLYCOL, Hemophore HasA, MALONATE ION, ...
著者Kumar, R, Lovell, S, Battaile, K.P, Rivera, M.
登録日2013-02-27
公開日2013-04-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change.
Biochemistry, 52, 2013
4JET
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BU of 4jet by Molmil
2.2A resolution structure of Holo hemophore HasA from Yersinia pestis
分子名称: CHLORIDE ION, Hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE
著者Kumar, R, Lovell, S, Battaile, K.P, Rivera, M.
登録日2013-02-27
公開日2013-04-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change.
Biochemistry, 52, 2013
4JER
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BU of 4jer by Molmil
1.1A resolution Apo structure of the hemophore HasA from Yersinia pestis (Tetragonal Form)
分子名称: Hemophore HasA, SODIUM ION
著者Kumar, R, Lovell, S, Battaile, K.P, Rivera, M.
登録日2013-02-27
公開日2013-04-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change.
Biochemistry, 52, 2013
4ZK8
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BU of 4zk8 by Molmil
Copper-containing nitrite reductase from thermophilic bacterium Geobacillus thermodenitrificans (Re-refined)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Fukuda, Y, Inoue, T.
登録日2015-04-30
公開日2015-05-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structural insights into the function of a thermostable copper-containing nitrite reductase
J.Biochem., 155, 2014
1VFL
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BU of 1vfl by Molmil
Adenosine deaminase
分子名称: Adenosine deaminase, ZINC ION
著者Kinoshita, T.
登録日2004-04-16
公開日2005-08-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of Compound Recognition by Adenosine Deaminase
Biochemistry, 44, 2005
6A77
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BU of 6a77 by Molmil
Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the Fab fragment of murine monoclonal antibody B5209B
分子名称: Heavy chain of the anti-human Robo1 antibody B5209B Fab, Light chain of the anti-human Robo1 antibody B5209B Fab, Roundabout homolog 1
著者Mizohata, E, Nakayama, T, Kado, Y, Inoue, T.
登録日2018-07-02
公開日2019-01-30
最終更新日2019-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface.
Structure, 27, 2019
6A76
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BU of 6a76 by Molmil
Crystal structure of the Fab fragment of B5209B, a murine monoclonal antibody specific for the fifth immunoglobulin domain (Ig5) of human ROBO1
分子名称: GLYCEROL, Heavy chain of the anti-human Robo1 antibody B5209B Fab, Light chain of the anti-human Robo1 antibody B5209B Fab, ...
著者Mizohata, E, Nakayama, T, Kado, Y, Inoue, T.
登録日2018-07-02
公開日2019-01-30
最終更新日2019-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface.
Structure, 27, 2019
6A79
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BU of 6a79 by Molmil
Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the mutant scFv fragment (P103A) of murine monoclonal antibody B5209B
分子名称: Heavy chain of the anti-human Robo1 antibody B5209B scFv, Light chain region of the anti-human Robo1 antibody B5209B scFv, Roundabout homolog 1, ...
著者Mizohata, E, Nakayama, T, Kado, Y, Yokota, Y, Inoue, T.
登録日2018-07-02
公開日2019-01-30
最終更新日2019-03-20
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface.
Structure, 27, 2019
6A78
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BU of 6a78 by Molmil
Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the scFv fragment of murine monoclonal antibody B5209B
分子名称: Heavy chain and linker region of the anti-human Robo1 antibody B5209B scFv, Light chain region of the anti-human Robo1 antibody B5209B scFv, Roundabout homolog 1, ...
著者Mizohata, E, Nakayama, T, Kado, Y, Inoue, T.
登録日2018-07-02
公開日2019-01-30
最終更新日2019-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface.
Structure, 27, 2019
5X7K
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BU of 5x7k by Molmil
Crystal structure of the nucleotide-binding domain (NBD) of LipB, a ABC transporter subunit of a type I secretion system
分子名称: Lipase B
著者Okano, H, Angkawidjaja, C, Takano, K.
登録日2017-02-27
公開日2017-11-15
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain
Biochemistry, 56, 2017
1WXY
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BU of 1wxy by Molmil
Crystal structure of adenosine deaminase ligated with a potent inhibitor
分子名称: Adenosine deaminase, N-[4,5-BIS(4-HYDROXYPHENYL)-1,3-THIAZOL-2-YL]HEXANAMIDE, ZINC ION
著者Kinoshita, T.
登録日2005-02-02
公開日2005-08-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis of Compound Recognition by Adenosine Deaminase
Biochemistry, 44, 2005

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