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5ZK6
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BU of 5zk6 by Molmil
Crystal structure of RimK complexed with RpsF
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribosomal protein S6--L-glutamate ligase
Authors:Arimura, Y, Kono, T, Kino, K, Kurumizaka, H.
Deposit date:2018-03-23
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Molecular dynamics prediction of substrate recognition by poly-alpha-L-glutamate synthetase
To Be Published
5ZCT
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BU of 5zct by Molmil
The crystal structure of the poly-alpha-L-glutamate peptides synthetase RimK at 2.05 angstrom resolution.
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ribosomal protein S6--L-glutamate ligase, ...
Authors:Arimura, Y, Kono, T, Kino, K, Kurumizaka, H.
Deposit date:2018-02-20
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural polymorphism of the Escherichia coli poly-alpha-L-glutamate synthetase RimK
Acta Crystallogr F Struct Biol Commun, 74, 2018
6AAV
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BU of 6aav by Molmil
Crystal structure of alpha-glucosyl transfer enzyme, XgtA at 1.72 angstrom resolution
Descriptor: Alpha-glucosyltransferase
Authors:Kurumizaka, H, Arimura, Y, Kirimura, K, Watanabe, R.
Deposit date:2018-07-19
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of alpha-glucosyl transfer enzyme XgtA from Xanthomonas campestris WU-9701.
Biochem.Biophys.Res.Commun., 526, 2020
5NL0
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BU of 5nl0 by Molmil
Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1
Descriptor: DNA (197-MER), Histone H1.0-B, Histone H2A type 1, ...
Authors:Garcia-Saez, I, Petosa, C, Dimitrov, S.
Deposit date:2017-04-03
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (5.4 Å)
Cite:Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Mol. Cell, 66, 2017
6R8Z
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BU of 6r8z by Molmil
Cryo-EM structure of NCP_THF2(-1)-UV-DDB
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R94
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BU of 6r94 by Molmil
Cryo-EM structure of NCP_THF2(-3)
Descriptor: Histone H2A type 1-B/E, Histone H2B type 1-J, Histone H3.1, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R90
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BU of 6r90 by Molmil
Cryo-EM structure of NCP-THF2(+1)-UV-DDB class A
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R91
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BU of 6r91 by Molmil
Cryo-EM structure of NCP_THF2(-3)-UV-DDB
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R92
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BU of 6r92 by Molmil
Cryo-EM structure of NCP-THF2(+1)-UV-DDB class B
Descriptor: DNA damage-binding protein 1,DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R8Y
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BU of 6r8y by Molmil
Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
6R93
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BU of 6r93 by Molmil
Cryo-EM structure of NCP-6-4PP
Descriptor: Histone H2A type 1-B/E, Histone H2B type 1-J, Histone H3.1, ...
Authors:Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H.
Deposit date:2019-04-02
Release date:2019-06-12
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4 Å)
Cite:DNA damage detection in nucleosomes involves DNA register shifting.
Nature, 571, 2019
5Z23
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BU of 5z23 by Molmil
Crystal structure of the nucleosome containing a chimeric histone H3/CENP-A CATD
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Arimura, Y, Tachiwana, H, Takagi, H.
Deposit date:2017-12-28
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.
Nat Commun, 10, 2019
7BY0
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BU of 7by0 by Molmil
The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Ariyoshi, M, Makino, F, Fukagawa, T.
Deposit date:2020-04-21
Release date:2021-02-10
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C.
Embo J., 40, 2021
7BXT
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BU of 7bxt by Molmil
The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain
Descriptor: CENP-C, DNA (145-mer), Histone H2A type 1-B/E, ...
Authors:Ariyoshi, M, Makino, F, Fukagawa, T.
Deposit date:2020-04-20
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C.
Embo J., 40, 2021
5ERC
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BU of 5erc by Molmil
X-ray crystal structure of BRPF1 PZP domain
Descriptor: CALCIUM ION, Peregrin, ZINC ION
Authors:Klein, B.J, Andrews, F.H, Kutateladze, T.G.
Deposit date:2015-11-13
Release date:2015-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation.
Nucleic Acids Res., 44, 2016

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