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5AZA
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BU of 5aza by Molmil
Crystal structure of MBP-sAglB fusion protein with a 20-residue spacer in the connector helix
Descriptor: CALCIUM ION, Maltose-binding periplasmic protein,Oligosaccharyl transferase stt3 subunit related protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5B2C
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BU of 5b2c by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, SULFATE ION
Authors:Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.238 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
5AWS
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BU of 5aws by Molmil
Crystal structure of the SGIP1 mu homology domain in the P1 space group
Descriptor: SH3-containing GRB2-like protein 3-interacting protein 1, ZINC ION
Authors:Shimada, A, Yamaguchi, A, Kohda, D.
Deposit date:2015-07-08
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain.
Sci Rep, 6, 2016
5AZ6
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BU of 5az6 by Molmil
Crystal structure of MBP-Tom20 fusion protein with a 2-residue spacer in the connector helix
Descriptor: Maltose-binding periplasmic protein,Mitochondrial import receptor subunit TOM20 homolog, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Matsuoka, R, Kohda, D.
Deposit date:2015-09-27
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules.
Protein Sci., 25, 2016
5B2D
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BU of 5b2d by Molmil
Crystal structure of Mumps virus hemagglutinin-neuraminidase bound to 3-sialyllactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HN protein, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Kubota, M, Takeuchi, K, Watanabe, S, Ohno, S, Matsuoka, R, Kohda, D, Hiramatsu, H, Suzuki, Y, Nakayama, T, Terada, T, Shimizu, K, Shimizu, N, Yanagi, Y, Hashiguchi, T.
Deposit date:2016-01-14
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus
Proc.Natl.Acad.Sci.USA, 113, 2016
3VGP
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BU of 3vgp by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AF_0329) from Archaeoglobus fulgidus
Descriptor: Transmembrane oligosaccharyl transferase, putative
Authors:Matsumoto, S, Igura, M, Nyirenda, J, Yuzawa, S, Noda, N.N, Inagaki, F, Kohda, D.
Deposit date:2011-08-18
Release date:2012-07-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of the C-Terminal Globular Domain of Oligosaccharyltransferase from Archaeoglobus fulgidus at 1.75 A Resolution
Biochemistry, 51, 2012
3VU0
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BU of 3vu0 by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-S2, AF_0040, O30195_ARCFU) from Archaeoglobus fulgidus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative uncharacterized protein
Authors:Nyirenda, J, Matsumoto, S, Saitoh, T, Maita, N, Noda, N.N, Inagaki, F, Kohda, D.
Deposit date:2012-06-13
Release date:2013-01-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystallographic and NMR Evidence for Flexibility in Oligosaccharyltransferases and Its Catalytic Significance
Structure, 21, 2013
3VU1
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BU of 3vu1 by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PhAglB-L, O74088_PYRHO) from Pyrococcus horikoshii
Descriptor: CALCIUM ION, CHLORIDE ION, Putative uncharacterized protein PH0242
Authors:Nyirenda, J, Matsumoto, S, Saitoh, T, Maita, N, Noda, N.N, Inagaki, F, Kohda, D.
Deposit date:2012-06-13
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic and NMR Evidence for Flexibility in Oligosaccharyltransferases and Its Catalytic Significance
Structure, 21, 2013
3WAJ
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BU of 3waj by Molmil
Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) complex with Zn and sulfate
Descriptor: SULFATE ION, Transmembrane oligosaccharyl transferase, ZINC ION
Authors:Matsumoto, S, Shimada, A, Kohda, D.
Deposit date:2013-05-03
Release date:2013-10-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation
Proc.Natl.Acad.Sci.USA, 110, 2013
3WAK
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BU of 3wak by Molmil
Crystal structure of the Archaeoglobus fulgidus oligosaccharyltransferase (O29867_ARCFU) in the apo form
Descriptor: MANGANESE (II) ION, Transmembrane oligosaccharyl transferase
Authors:Matsumoto, S, Shimada, A, Kohda, D.
Deposit date:2013-05-03
Release date:2013-10-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.413 Å)
Cite:Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation
Proc.Natl.Acad.Sci.USA, 110, 2013
3WOV
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BU of 3wov by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
Descriptor: CALCIUM ION, Oligosaccharyl transferase
Authors:Matsuoka, R, Nyirenda, J, Maita, N, Kohda, D.
Deposit date:2014-01-05
Release date:2014-01-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (PaAglB-L, Q9V250_PYRAB, PAB2202) from Pyrococcus abyssi
To be Published
3WAI
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BU of 3wai by Molmil
Crystal structure of the C-terminal globular domain of oligosaccharyltransferase (AfAglB-L, O29867_ARCFU) from Archaeoglobus fulgidus as a MBP fusion
Descriptor: Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase
Authors:Matsumoto, S, Shimada, A, Kohda, D.
Deposit date:2013-05-03
Release date:2013-07-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases
Bmc Struct.Biol., 13, 2013
2RQR
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BU of 2rqr by Molmil
The solution structure of human DOCK2 SH3 domain - ELMO1 peptide chimera complex
Descriptor: Engulfment and cell motility protein 1,Dedicator of cytokinesis protein 2
Authors:Yokoyama, S, Tochio, N, Koshiba, S, Kigawa, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-21
Release date:2010-10-27
Last modified:2020-01-22
Method:SOLUTION NMR
Cite:Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
3A98
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BU of 3a98 by Molmil
Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1
Descriptor: Dedicator of cytokinesis protein 2, Engulfment and cell motility protein 1
Authors:Hanawa-Suetsugu, K, Kukimoto-Niino, M, Sekine, S, Ito, T, Mishima-Tsumagari, C, Terada, T, Shirouzu, M, Fukui, Y, Yokoyama, S.
Deposit date:2009-10-21
Release date:2010-10-27
Last modified:2019-09-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
3AG7
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BU of 3ag7 by Molmil
An auxilin-like J-domain containing protein, JAC1 J-domain
Descriptor: Putative uncharacterized protein F9E10.5
Authors:Takano, A.
Deposit date:2010-03-24
Release date:2010-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and functional analyses of J-domain of JAC1 essential for chloroplast photorelocation movement in Arabidopsis thaliana
Plant Cell.Physiol., 51, 2010
3B13
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BU of 3b13 by Molmil
Crystal structure of the DHR-2 domain of DOCK2 in complex with Rac1 (T17N mutant)
Descriptor: Dedicator of cytokinesis protein 2, Ras-related C3 botulinum toxin substrate 1
Authors:Hanawa-Suetsugu, K, Kukimoto-Niino, M, Mishima-Tsumagari, C, Terada, T, Shirouzu, M, Fukui, Y, Yokoyama, S.
Deposit date:2011-06-24
Release date:2012-03-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.006 Å)
Cite:Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
2ZAG
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BU of 2zag by Molmil
Crystal structure of the SeMet-substituted soluble domain of STT3 from P. furiosus
Descriptor: CALCIUM ION, CHLORIDE ION, Oligosaccharyl transferase stt3 subunit related protein
Authors:Maita, N.
Deposit date:2007-10-05
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-guided identification of a new catalytic motif of oligosaccharyltransferase
Embo J., 27, 2008
2ZAI
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BU of 2zai by Molmil
Crystal structure of the soluble domain of STT3 from P. furiosus
Descriptor: CALCIUM ION, CHLORIDE ION, Oligosaccharyl transferase stt3 subunit related protein
Authors:Maita, N.
Deposit date:2007-10-05
Release date:2007-12-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-guided identification of a new catalytic motif of oligosaccharyltransferase
Embo J., 27, 2008
1GIB
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BU of 1gib by Molmil
MU-CONOTOXIN GIIIB, NMR
Descriptor: MU-CONOTOXIN GIIIB
Authors:Hill, J.M, Alewood, P.F, Craik, D.J.
Deposit date:1996-04-17
Release date:1996-11-08
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of mu-conotoxin GIIIB, a specific blocker of skeletal muscle sodium channels.
Biochemistry, 35, 1996
3W9F
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BU of 3w9f by Molmil
Crystal structure of the ankyrin repeat domain of chicken TRPV4 in complex with IP3
Descriptor: D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, Vanilloid receptor-related osmotically activated channel protein
Authors:Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
3W9G
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BU of 3w9g by Molmil
Crystal structure of the ankyrin repeat domain of chicken TRPV4
Descriptor: Vanilloid receptor-related osmotically activated channel protein
Authors:Itoh, Y, Hamada-nakahara, S, Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
1O7C
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BU of 1o7c by Molmil
Solution structure of the human TSG-6 Link module in the presence of a hyaluronan octasaccharide
Descriptor: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6
Authors:Blundell, C.D, Teriete, P, Kahmann, J.D, Pickford, A.R, Campbell, I.D, Day, A.J.
Deposit date:2002-10-29
Release date:2003-10-23
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:The link module from ovulation- and inflammation-associated protein TSG-6 changes conformation on hyaluronan binding.
J. Biol. Chem., 278, 2003
1O7B
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BU of 1o7b by Molmil
Refined solution structure of the human TSG-6 Link module
Descriptor: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6
Authors:Blundell, C.D, Teriete, P, Kahmann, J.D, Pickford, A.R, Campbell, I.D, Day, A.J.
Deposit date:2002-10-29
Release date:2003-10-23
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:The link module from ovulation- and inflammation-associated protein TSG-6 changes conformation on hyaluronan binding.
J. Biol. Chem., 278, 2003
1POZ
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BU of 1poz by Molmil
SOLUTION STRUCTURE OF THE HYALURONAN BINDING DOMAIN OF HUMAN CD44
Descriptor: CD44 antigen
Authors:Teriete, P, Banerji, S, Blundell, C.D, Kahmann, J.D, Pickford, A.R, Wright, A.J, Campbell, I.D, Jackson, D.G, Day, A.J.
Deposit date:2003-06-16
Release date:2004-03-16
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Structure of the Regulatory Hyaluronan Binding Domain in the Inflammatory Leukocyte Homing Receptor CD44.
Mol.Cell, 13, 2004
1H6H
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BU of 1h6h by Molmil
Structure of the PX domain from p40phox bound to phosphatidylinositol 3-phosphate
Descriptor: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE, GLYCEROL, NEUTROPHIL CYTOSOL FACTOR 4
Authors:Karathanassis, D, Bravo, J, Pacold, M, Perisic, O, Williams, R.L.
Deposit date:2001-06-15
Release date:2001-11-01
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of the Px Domain from P40Phox Bound to Phosphatidylinositol 3-Phosphate
Mol.Cell, 8, 2001

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