8WO8
 
 | | Crystal Structure of an RNA-binding protein, FAU-1, from Pyrococcus furiosus | | 分子名称: | Probable ribonuclease FAU-1, RNA (5'-R(P*AP*UP*A)-3') | | 著者 | Kawai, G, Okada, K, Baba, S, Sato, A, Sakamoto, T, Kanai, A. | | 登録日 | 2023-10-06 | | 公開日 | 2024-02-14 | | 実験手法 | X-RAY DIFFRACTION (2.78 Å) | | 主引用文献 | Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.
J.Biochem., 2024
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2IP4
 | | Crystal Structure of Glycinamide Ribonucleotide Synthetase from Thermus thermophilus HB8 | | 分子名称: | Phosphoribosylamine--glycine ligase, SULFATE ION | | 著者 | Sampei, G, Baba, S, Kanagawa, M, Yanai, H, Ishii, T, Kawai, H, Fukai, Y, Ebihara, A, Nakagawa, N, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-10-11 | | 公開日 | 2007-10-30 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
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3HSB
 | | Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer | | 分子名称: | Protein hfq, RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3') | | 著者 | Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K. | | 登録日 | 2009-06-10 | | 公開日 | 2010-06-23 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
Nucleic Acids Res., 40, 2012
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1AA9
 | | HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE | | 分子名称: | C-HA-RAS, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION | | 著者 | Ito, Y, Yamasaki, Y, Muto, Y, Kawai, G, Nishimura, S, Miyazawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 1997-01-27 | | 公開日 | 1997-07-29 | | 最終更新日 | 2022-02-16 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.
Biochemistry, 36, 1997
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3W7B
 | | Crystal structure of formyltetrahydrofolate deformylase from Thermus thermophilus HB8 | | 分子名称: | Formyltetrahydrofolate deformylase | | 著者 | Sampei, G, Yanagida, Y, Ogata, N, Kusano, M, Terao, K, Kawai, H, Fukai, Y, Kanagawa, M, Inoue, Y, Baba, S, Kawai, G. | | 登録日 | 2013-02-28 | | 公開日 | 2014-01-08 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.71 Å) | | 主引用文献 | Structures and reaction mechanisms of the two related enzymes, PurN and PurU
J.Biochem., 154, 2013
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8I43
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8I44
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8I45
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8I46
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1FNX
 | | SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT | | 分子名称: | AU-RICH RNA ELEMENT, HU ANTIGEN C | | 著者 | Inoue, M, Hirao, M, Kasashima, K, Kim, I.-S, Kawai, G, Kigawa, T, Sakamoto, H, Muto, Y, Yokoyama, S. | | 登録日 | 2000-08-24 | | 公開日 | 2003-06-24 | | 最終更新日 | 2022-02-23 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of mouse HuC RNA-binding domains complexed with an AU-Rich element reveals determinants of neuronal differentiation
To be Published, 2000
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6J61
 | | Crystal Structure of Thymidylate Synthase, Thy1, from Thermus thermophilus having an Extra C Terminal Domain | | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent thymidylate synthase, PHOSPHATE ION | | 著者 | Ogawa, A, Sampei, G, Kawai, G. | | 登録日 | 2019-01-12 | | 公開日 | 2019-06-26 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal structure of the flavin-dependent thymidylate synthase Thy1 from Thermus thermophilus with an extra C-terminal domain.
Acta Crystallogr.,Sect.F, 75, 2019
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6JRQ
 | | Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus | | 分子名称: | 1,2-ETHANEDIOL, Adenylosuccinate synthetase, INOSINIC ACID | | 著者 | Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2019-04-05 | | 公開日 | 2020-04-08 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of adenylosuccinate synthetase, PurA, from Thermus thermophilus HB8
To Be Published
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2RVO
 | | Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish | | 分子名称: | RNA (34-MER) | | 著者 | Otsu, M, Norose, N, Arai, N, Terao, R, Kajikawa, M, Okada, N, Kawai, G. | | 登録日 | 2016-02-03 | | 公開日 | 2017-02-08 | | 最終更新日 | 2023-06-14 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.
J. Biochem., 162, 2017
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2FYH
 | | Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus | | 分子名称: | putative integral membrane transport protein | | 著者 | Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2006-02-08 | | 公開日 | 2007-02-20 | | 最終更新日 | 2024-05-01 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus
Rna, 15, 2009
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8JBD
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6IZP
 | | Solution structure of the complex of naphthyridine carbamate dimer and an RNA with UGGAA-UGGAA pentad | | 分子名称: | 3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate, RNA (29-MER) | | 著者 | Nagano, K, Shibata, T, Nakatani, K, Kawai, G. | | 登録日 | 2018-12-20 | | 公開日 | 2019-12-25 | | 最終更新日 | 2023-06-14 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Small molecule targeting r(UGGAA)n disrupts RNA foci and alleviates disease phenotype in Drosophila model
Nat Commun, 12, 2021
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2RRC
 | | Solution Structure of RNA aptamer against AML1 Runt domain | | 分子名称: | 5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3' | | 著者 | Nomura, Y, Fujiwara, K, Chiba, M, Fukunaga, J, Tanaka, Y, Iibuchi, H, Tanaka, T, Nakamura, Y, Kawai, G, Kozu, T, Sakamoto, T. | | 登録日 | 2010-06-23 | | 公開日 | 2011-06-29 | | 最終更新日 | 2024-05-01 | | 実験手法 | SOLUTION NMR | | 主引用文献 | A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
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6LN3
 | | Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP | | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... | | 著者 | Shibanuma, Y, Nemoto, N, Yamamoto, N, Sampei, G, Kawai, G. | | 登録日 | 2019-12-28 | | 公開日 | 2020-04-22 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP.
J.Biochem., 168, 2020
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1IT1
 | | Solution structures of ferrocytochrome c3 from Desulfovibrio vulgaris Miyazaki F | | 分子名称: | HEME C, cytochrome c3 | | 著者 | Harada, E, Fukuoka, Y, Ohmura, T, Fukunishi, A, Kawai, G, Fujiwara, T, Akutsu, H. | | 登録日 | 2001-12-29 | | 公開日 | 2002-07-10 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Redox-coupled conformational alternations in cytochrome c(3) from D. vulgaris Miyazaki F on the basis of its reduced solution structure.
J.Mol.Biol., 319, 2002
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2YRW
 | | Crystal structure of GAR synthetase from Geobacillus kaustophilus | | 分子名称: | PHOSPHATE ION, Phosphoribosylglycinamide synthetase | | 著者 | Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-03 | | 公開日 | 2007-10-09 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
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2YS6
 | | Crystal structure of GAR synthetase from Geobacillus kaustophilus | | 分子名称: | ADENOSINE MONOPHOSPHATE, GLYCINE, Phosphoribosylglycinamide synthetase | | 著者 | Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-03 | | 公開日 | 2007-10-09 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
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2YS7
 | | Crystal structure of GAR synthetase from Geobacillus kaustophilus | | 分子名称: | Phosphoribosylglycinamide synthetase | | 著者 | Baba, S, Kanagawa, M, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-04-03 | | 公開日 | 2007-10-09 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | Crystal structures of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
J.Biochem., 148, 2010
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1J1H
 | | Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus | | 分子名称: | Small Protein B | | 著者 | Someya, T, Nameki, N, Hosoi, H, Suzuki, S, Hatanaka, H, Fujii, M, Terada, T, Shirouzu, M, Inoue, Y, Shibata, T, Kuramitsu, S, Yokoyama, S, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2002-12-04 | | 公開日 | 2003-02-11 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
FEBS Lett., 535, 2003
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1L1W
 | | NMR structure of a SRP19 binding domain in human SRP RNA | | 分子名称: | SRP19 binding domain of SRP RNA | | 著者 | Sakamoto, T, Morita, S, Tabata, K, Nakamura, K, Kawai, G. | | 登録日 | 2002-02-20 | | 公開日 | 2002-05-22 | | 最終更新日 | 2022-02-23 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of a SRP19 binding domain in human SRP RNA.
J.Biochem.(Tokyo), 132, 2002
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1K2G
 | | Structural basis for the 3'-terminal guanosine recognition by the group I intron | | 分子名称: | 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3' | | 著者 | Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S. | | 登録日 | 2001-09-27 | | 公開日 | 2002-05-08 | | 最終更新日 | 2022-02-23 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
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