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7DZH
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BU of 7dzh by Molmil
intermediate of FABP with a delay time of 100 ns
Descriptor: Fatty acid-binding protein, liver, PALMITIC ACID
Authors:Li, H, Yu, L.-J, Liu, X, Shen, J.-R, Wang, J.
Deposit date:2021-01-25
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem., 14, 2022
7DZG
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BU of 7dzg by Molmil
Intermediate of FABP with a delay time of 30 ns
Descriptor: Fatty acid-binding protein, liver, PALMITIC ACID
Authors:Li, H, Yu, L.-J, Liu, X, Shen, J.-R, Wang, J.
Deposit date:2021-01-25
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem., 14, 2022
7DZI
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BU of 7dzi by Molmil
intermediate of FABP with a delay time of 300 ns
Descriptor: Fatty acid-binding protein, liver, PALMITIC ACID
Authors:Li, H, Yu, L.-J, Liu, X, Shen, J.-R, Wang, J.
Deposit date:2021-01-25
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem., 14, 2022
7DZE
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BU of 7dze by Molmil
Fabp ground state captured by XFELs
Descriptor: Fatty acid-binding protein, liver, PALMITIC ACID
Authors:Li, H, Yu, L.-J, Liu, X, Shen, J.-R, Wang, J.
Deposit date:2021-01-25
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem., 14, 2022
7DZK
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BU of 7dzk by Molmil
Fabp protein after hv
Descriptor: Fatty acid-binding protein, liver, PALMITIC ACID
Authors:Li, H, Yu, L.-J, Liu, X, Shen, J.-R, Wang, J.
Deposit date:2021-01-25
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Nat.Chem., 14, 2022
5GZ9
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BU of 5gz9 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GKN
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BU of 5gkn by Molmil
Catalase structure determined by electron crystallography of thin 3D crystals
Descriptor: Catalase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yonekura, K.
Deposit date:2016-07-04
Release date:2016-10-26
Last modified:2023-11-08
Method:ELECTRON CRYSTALLOGRAPHY (3.2 Å)
Cite:Refinement of Cryo-EM Structures Using Scattering Factors of Charged Atoms
J.Appl.Crystallogr., 49, 2016
5GZ8
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BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
Descriptor: Protein O-mannose kinase
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
7WZU
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BU of 7wzu by Molmil
Crystal structure of metallo-beta-lactamase IMP-6.
Descriptor: Beta-lactamase, ZINC ION
Authors:Yamaguchi, Y, Kurosaki, H.
Deposit date:2022-02-19
Release date:2023-01-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Difference in the Inhibitory Effect of Thiol Compounds and Demetallation Rates from the Zn(II) Active Site of Metallo-beta-lactamases (IMP-1 and IMP-6) Associated with a Single Amino Acid Substitution.
Acs Infect Dis., 9, 2023
6KNE
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BU of 6kne by Molmil
The C-terminal Domain of Translation Initiation Factor 5 at high pH
Descriptor: Translation initiation factor eIF5
Authors:Jian, Y, YuXin, Y, Min, Y.
Deposit date:2019-08-05
Release date:2020-06-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:The pH-dependent conformational change of eukaryotic translation initiation factor 5: Insights into partner-binding manner.
Biochem.Biophys.Res.Commun., 519, 2019
6KND
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BU of 6knd by Molmil
The C-terminal Domain of Translation Initiation Factor 5 at low pH
Descriptor: Translation initiation factor eIF5
Authors:Jian, Y, YuXin, Y, Min, Y.
Deposit date:2019-08-05
Release date:2020-06-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The pH-dependent conformational change of eukaryotic translation initiation factor 5: Insights into partner-binding manner.
Biochem.Biophys.Res.Commun., 519, 2019
6LIU
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BU of 6liu by Molmil
Crystal structure of apo Tyrosine decarboxylase
Descriptor: Tyrosine/DOPA decarboxylase 2
Authors:Yu, J, Wang, H, Yao, M.
Deposit date:2019-12-13
Release date:2020-02-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures clarify cofactor binding of plant tyrosine decarboxylase.
Biochem.Biophys.Res.Commun., 2019
6LIV
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BU of 6liv by Molmil
Crystal structure of Tyrosine decarboxylase in complex with PLP
Descriptor: GLYCEROL, Tyrosine/DOPA decarboxylase 2
Authors:Wang, H, Yu, J, Yao, M.
Deposit date:2019-12-13
Release date:2020-02-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal structures clarify cofactor binding of plant tyrosine decarboxylase.
Biochem.Biophys.Res.Commun., 2019
8H3H
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BU of 8h3h by Molmil
Human ATAD2 Walker B mutant, ATP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2
Authors:Cho, C, Song, J.
Deposit date:2022-10-08
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication.
Commun Biol, 6, 2023
8JUY
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BU of 8juy by Molmil
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class II)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2
Authors:Cho, C, Song, J.
Deposit date:2023-06-27
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (4.34 Å)
Cite:Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication.
Commun Biol, 6, 2023
8JUZ
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BU of 8juz by Molmil
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class III)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2
Authors:Cho, C, Song, J.
Deposit date:2023-06-27
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (4.29 Å)
Cite:Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication.
Commun Biol, 6, 2023
8JUW
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BU of 8juw by Molmil
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2
Authors:Cho, C, Song, J.
Deposit date:2023-06-27
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication.
Commun Biol, 6, 2023
3APA
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BU of 3apa by Molmil
Crystal structure of human pancreatic secretory protein ZG16p
Descriptor: CHLORIDE ION, GLYCEROL, Zymogen granule membrane protein 16
Authors:Kanagawa, M, Satoh, T, Nakano, Y, Kojima-Aikawa, K, Yamaguchi, Y.
Deposit date:2010-10-13
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold
Biochem.Biophys.Res.Commun., 2010
3AQG
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BU of 3aqg by Molmil
Crystal structure of human pancreatic secretory protein ZG16b
Descriptor: PHOSPHATE ION, Zymogen granule protein 16 homolog B
Authors:Kanagawa, M, Satoh, T, Nakano, Y, Kojima-Aikawa, K, Yamaguchi, Y.
Deposit date:2010-11-01
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold
Biochem.Biophys.Res.Commun., 2010
7DTN
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BU of 7dtn by Molmil
Crystal structure of metallo-beta-lactamase IMP-1 mutant (D120E) in complex with citrate.
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, CITRATE ANION, Metallo-beta-lactamase type 2, ...
Authors:Yamaguchi, Y, Kurosaki, H.
Deposit date:2021-01-06
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
7DTM
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BU of 7dtm by Molmil
Crystal structure of metallo-beta-lactamase IMP-1 in complex with citrate.
Descriptor: CITRATE ANION, Metallo-beta-lactamase type 2, ZINC ION
Authors:Yamaguchi, Y, Kurosaki, H.
Deposit date:2021-01-06
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Metallo-beta-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
J.Med.Chem., 64, 2021
2DOS
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BU of 2dos by Molmil
Structural basis for the recognition of Lys48-linked polyubiquitin chain by the Josephin domain of ataxin-3, a putative deubiquitinating enzyme
Descriptor: Ataxin-3
Authors:Sumiyoshi, A.
Deposit date:2006-05-03
Release date:2007-05-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Mode of substrate recognition by the Josephin domain of ataxin-3, which has an endo-type deubiquitinase activity.
Febs Lett., 588, 2014
3WSY
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BU of 3wsy by Molmil
SorLA Vps10p domain in complex with its own propeptide fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor, peptide from Sortilin-related receptor
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015
3WSZ
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BU of 3wsz by Molmil
SorLA Vps10p domain in complex with Abeta-derived peptide
Descriptor: 10-mer peptide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.201 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015
3WSX
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BU of 3wsx by Molmil
SorLA Vps10p domain in ligand-free form
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ...
Authors:Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J.
Deposit date:2014-03-30
Release date:2015-02-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for amyloidogenic peptide recognition by sorLA.
Nat.Struct.Mol.Biol., 22, 2015

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