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4FZ2
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Crystal structure of the fourth type of archaeal tRNA splicing endonuclease from Candidatus Micrarchaeum acidiphilum ARMAN-2
分子名称: tRNA intron endonuclease
著者Hirata, A, Fujishima, K, Yamagami, R, Kawamura, T, Banfiled, J.F, Kanai, A, Hori, H.
登録日2012-07-06
公開日2012-09-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.252 Å)
主引用文献X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity
Nucleic Acids Res., 40, 2012
3P1Z
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Crystal structure of the Aperopyrum pernix RNA splicing endonuclease
分子名称: Putative uncharacterized protein, tRNA-splicing endonuclease
著者Hirata, A.
登録日2010-10-01
公開日2011-08-10
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
3P1Y
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Crystal structure of the chimeric Archaeoglobus fulgidus RNA splicing endonuclease with the broadest substrate specificity
分子名称: tRNA-splicing endonuclease
著者Hirata, A.
登録日2010-10-01
公開日2011-08-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop
Nucleic Acids Res., 39, 2011
1Q6D
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BU of 1q6d by Molmil
Crystal structure of Soybean Beta-Amylase Mutant (M51T) with Increased pH Optimum
分子名称: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
登録日2003-08-13
公開日2004-02-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6C
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Crystal Structure of Soybean Beta-Amylase Complexed with Maltose
分子名称: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, beta-amylase
著者Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
登録日2003-08-13
公開日2004-02-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6E
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Crystal Structure of Soybean Beta-Amylase Mutant (E178Y) with Increased pH Optimum at pH 5.4
分子名称: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
登録日2003-08-13
公開日2004-02-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6G
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Crystal Structure of Soybean Beta-Amylase Mutant (N340T) with Increased pH Optimum
分子名称: SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
登録日2003-08-13
公開日2004-02-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
1Q6F
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Crystal Structure of Soybean Beta-Amylase Mutant (E178Y) with Increased pH Optimum at pH 7.1
分子名称: SULFATE ION, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Sekine, A, Kang, Y.N, Utsumi, S, Mikami, B.
登録日2003-08-13
公開日2004-02-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and Enzymatic Analysis of Soybean {beta}-Amylase Mutants with Increased pH Optimum
J.Biol.Chem., 279, 2004
2PA8
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X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase
分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ...
著者Hirata, A, Murakami, K.S.
登録日2007-03-27
公開日2008-02-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献The X-ray crystal structure of RNA polymerase from Archaea.
Nature, 451, 2008
1VEO
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Crystal Structure Analysis of Y164F/maltose of Bacillus cereus Beta-Amylase at pH 4.6
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEP
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Crystal Structure Analysis of Triple (T47M/Y164E/T328N)/maltose of Bacillus cereus Beta-Amylase at pH 6.5
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEM
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Crystal Structure Analysis of Bacillus Cereus Beta-Amylase at the optimum pH (6.5)
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEN
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BU of 1ven by Molmil
Crystal Structure Analysis of Y164E/maltose of Bacilus cereus Beta-amylase at pH 4.6
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
5E71
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Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) from Thermococcus kodakarensis
分子名称: N2, N2-dimethylguanosine tRNA methyltransferase
著者Hirata, A.
登録日2015-10-11
公開日2016-07-06
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
5E72
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Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) in complex with S-adenosyl-L-methionine (SAM) from Thermococcus kodakarensis
分子名称: N2, N2-dimethylguanosine tRNA methyltransferase, S-ADENOSYLMETHIONINE
著者Hirata, A.
登録日2015-10-11
公開日2016-07-06
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.739 Å)
主引用文献Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules.
Nucleic Acids Res., 2016
6JPL
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The X-ray structure of yeast tRNA methyltransferase Trm7-Trm734 in complex with S-adenosyl-L-methionine
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, S-ADENOSYLMETHIONINE, SULFATE ION, ...
著者Hirata, A, Okada, K, Yoshii, K, Shiraisi, H, Saijo, S, Yonezawa, K, Shimizu, N, Hori, H.
登録日2019-03-27
公開日2019-10-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
6JP6
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The X-ray structure of yeast tRNA methyltransferase complex of Trm7 and Trm734 essential for 2'-O-methylation at the first position of anticodon in specific tRNAs
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase, ...
著者Hirata, A, Okada, K, Yoshii, K, Shiraisi, H, Saijo, S, Yonezawa, K, Sihimzu, N, Hori, H.
登録日2019-03-26
公開日2019-10-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.699 Å)
主引用文献Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
4QJV
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The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis
分子名称: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION
著者Hirata, A, Murakami, K.S.
登録日2014-06-05
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration
Nat Commun, 5, 2014
1CQY
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STARCH BINDING DOMAIN OF BACILLUS CEREUS BETA-AMYLASE
分子名称: BETA-AMYLASE
著者Yoon, H.J, Hirata, A, Adachi, M, Sekine, A, Utsumi, S, Mikami, B.
登録日1999-08-12
公開日1999-08-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of Separated Starch-Binding Domain of Bacillus cereus B-amylase
To be Published
8JL8
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Crystal structure of the collagen binding domain of Cnm from Streptococcus mutans
分子名称: Collagen-binding adhesin, GLYCEROL, SULFATE ION
著者Tanaka, S.-i, Hirata, A, Takano, K.
登録日2023-06-02
公開日2024-04-10
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structure, Stability and Binding Properties of Collagen-Binding Domains from Streptococcus mutans.
Chemistry, 5, 2023
7EDC
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BU of 7edc by Molmil
Crystal structure of mutant tRNA [Gm18] methyltransferase TrmH (E107G) in complex with S-adenosyl-L-methionine from Escherichia coli
分子名称: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (guanosine(18)-2'-O)-methyltransferase
著者Kono, Y, Ito, A, Okamoto, A, Yamagami, R, Hirata, A, Hori, H.
登録日2021-03-15
公開日2022-03-23
実験手法X-RAY DIFFRACTION (1.946 Å)
主引用文献Unique substrate specificity of type II tRNA Gm18 methyltransferase from Escherichia coli
To Be Published
3W5B
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BU of 3w5b by Molmil
Crystal structure of the recombinant SERCA1a (calcium pump of fast twitch skeletal muscle) in the E1.Mg2+ state
分子名称: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
著者Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
登録日2013-01-27
公開日2013-03-06
最終更新日2013-03-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5C
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Crystal structure of the calcium pump in the E2 state free from exogenous inhibitors
分子名称: PHOSPHATIDYLETHANOLAMINE, SERCA1a, SODIUM ION
著者Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
登録日2013-01-27
公開日2013-03-06
最終更新日2013-03-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5A
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Crystal structure of the calcium pump and sarcolipin from rabbit fast twitch skeletal muscle in the E1.Mg2+ state
分子名称: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
著者Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
登録日2013-01-27
公開日2013-03-06
最終更新日2013-03-27
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
3W5D
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Crystal structure of the calcium pump in the E2+Pi state
分子名称: PHOSPHATIDYLETHANOLAMINE, SERCA1a, SODIUM ION, ...
著者Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
登録日2013-01-27
公開日2013-03-06
最終更新日2013-03-27
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013

 

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