1QH9
 
 | | ENZYME-PRODUCT COMPLEX OF L-2-HALOACID DEHALOGENASE | | Descriptor: | 2-HALOACID DEHALOGENASE, LACTIC ACID | | Authors: | Li, Y.-F, Hata, Y, Fujii, T, Kurihara, T, Esaki, N. | | Deposit date: | 1999-05-12 | | Release date: | 2000-05-24 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | The Structure of L-2-Haloacid Dehalogenase Complexed with a Reaction Product Reveals the Mechanism of Intermediate Hydrolysis in Dehalogenase
To be Published
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1SRP
 | | STRUCTURAL ANALYSIS OF SERRATIA PROTEASE | | Descriptor: | CALCIUM ION, SERRALYSIN, ZINC ION | | Authors: | Hamada, K, Hiramatsu, H, Katsuya, Y, Hata, Y, Katsube, Y. | | Deposit date: | 1994-11-02 | | Release date: | 1995-02-14 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of Serratia protease, a zinc-dependent proteinase from Serratia sp. E-15, containing a beta-sheet coil motif at 2.0 A resolution.
J.Biochem.(Tokyo), 119, 1996
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1AKL
 | | ALKALINE PROTEASE FROM PSEUDOMONAS AERUGINOSA IFO3080 | | Descriptor: | ALKALINE PROTEASE, CALCIUM ION, ZINC ION | | Authors: | Miyatake, H, Hata, Y, Fujii, T, Hamada, K, Morihara, K, Katsube, Y. | | Deposit date: | 1995-09-16 | | Release date: | 1996-03-08 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of the unliganded alkaline protease from Pseudomonas aeruginosa IFO3080 and its conformational changes on ligand binding.
J.Biochem.(Tokyo), 118, 1995
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1I29
 | | CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE | | Descriptor: | (2S)-2-aminobut-3-ynoic acid, CSDB, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Mihara, H, Fujii, T, Kurihara, T, Hata, Y, Esaki, N. | | Deposit date: | 2001-02-07 | | Release date: | 2003-07-01 | | Last modified: | 2023-08-09 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward
selenocysteine.
J.BIOCHEM.(TOKYO), 131, 2002
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1C0N
 | | CSDB PROTEIN, NIFS HOMOLOGUE | | Descriptor: | ACETIC ACID, PROTEIN (CSDB PROTEIN), PYRIDOXAL-5'-PHOSPHATE | | Authors: | Fujii, T, Maeda, M, Mihara, H, Kurihara, T, Esaki, N, Hata, Y. | | Deposit date: | 1999-07-17 | | Release date: | 2000-07-17 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase
Biochemistry, 39, 2000
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1JUD
 | | L-2-HALOACID DEHALOGENASE | | Descriptor: | L-2-HALOACID DEHALOGENASE | | Authors: | Hisano, T, Hata, Y, Fujii, T, Liu, J.-Q, Kurihara, T, Esaki, N, Soda, K. | | Deposit date: | 1996-06-03 | | Release date: | 1996-12-07 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
J.Biol.Chem., 271, 1996
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1CCR
 | | STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION | | Descriptor: | CYTOCHROME C, HEME C | | Authors: | Ochi, H, Hata, Y, Tanaka, N, Kakudo, M, Sakurai, T, Aihara, S, Morita, Y. | | Deposit date: | 1983-03-14 | | Release date: | 1983-04-21 | | Last modified: | 2021-03-03 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structure of rice ferricytochrome c at 2.0 A resolution.
J.Mol.Biol., 166, 1983
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1UOK
 | | CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE | | Descriptor: | OLIGO-1,6-GLUCOSIDASE | | Authors: | Watanabe, K, Hata, Y, Kizaki, H, Katsube, Y, Suzuki, Y. | | Deposit date: | 1998-07-28 | | Release date: | 1999-02-16 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.
J.Mol.Biol., 269, 1997
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1WPX
 | | Crystal structure of carboxypeptidase Y inhibitor complexed with the cognate proteinase | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase Y, Carboxypeptidase Y inhibitor, ... | | Authors: | Mima, J, Hayashida, M, Fujii, T, Narita, Y, Hayashi, R, Ueda, M, Hata, Y. | | Deposit date: | 2004-09-14 | | Release date: | 2005-03-01 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structure of the carboxypeptidase y inhibitor i(c) in complex with the cognate proteinase reveals a novel mode of the proteinase-protein inhibitor interaction
J.Mol.Biol., 346, 2005
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1J3U
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3W5S
 | | Crystal Structure of Maleylacetate Reductase from Rhizobium sp. strain MTP-10005 | | Descriptor: | BENZAMIDINE, GLYCEROL, Maleylacetate reductase, ... | | Authors: | Fujii, T, Ogawa, A, Goda, Y, Yamauchi, T, Yoshida, M, Oikawa, T, Hata, Y. | | Deposit date: | 2013-02-06 | | Release date: | 2014-02-12 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.49 Å) | | Cite: | Crystal Structure of Maleylacetate Reductase from Rhizobium sp. strain MTP-10005
To be Published
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1ULK
 | | Crystal Structure of Pokeweed Lectin-C | | Descriptor: | lectin-C | | Authors: | Hayashida, M, Fujii, T, Ishiguro, M, Hata, Y. | | Deposit date: | 2003-09-12 | | Release date: | 2003-12-23 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed.
J.Mol.Biol., 334, 2003
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1ULN
 | | Crystal Structure of Pokeweed Lectin-D1 | | Descriptor: | lectin-D | | Authors: | Fujii, T, Hayashida, M, Hamasu, M, Ishiguro, M, Hata, Y. | | Deposit date: | 2003-09-16 | | Release date: | 2004-04-13 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
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1ULM
 | | Crystal Structure of Pokeweed Lectin-D2 complexed with tri-N-acetylchitotriose | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, lectin-D2 | | Authors: | Hayashida, M, Fujii, T, Ishiguro, M, Hata, Y. | | Deposit date: | 2003-09-12 | | Release date: | 2003-12-23 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Similarity between protein-protein and protein-carbohydrate interactions, revealed by two crystal structures of lectins from the roots of pokeweed.
J.Mol.Biol., 334, 2003
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1UHA
 | | Crystal Structure of Pokeweed Lectin-D2 | | Descriptor: | CALCIUM ION, lectin-D2 | | Authors: | Fujii, T, Hayashida, M, Hamasu, M, Ishiguro, M, Hata, Y. | | Deposit date: | 2003-06-27 | | Release date: | 2004-04-13 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
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1XER
 | | STRUCTURE OF FERREDOXIN | | Descriptor: | FE3-S4 CLUSTER, FERREDOXIN, ZINC ION | | Authors: | Fujii, T, Hata, Y, Moriyama, H, Wakagi, T, Tanaka, N, Oshima, T. | | Deposit date: | 1996-08-28 | | Release date: | 1997-09-04 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins.
Nat.Struct.Biol., 3, 1996
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1ZRN
 | | INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE | | Descriptor: | ACETIC ACID, L-2-HALOACID DEHALOGENASE | | Authors: | Li, Y.-F, Hata, Y, Fujii, T, Hisano, T, Nishihara, M, Kurihara, T, Esaki, N. | | Deposit date: | 1998-03-03 | | Release date: | 1999-03-23 | | Last modified: | 2023-08-09 | | Method: | X-RAY DIFFRACTION (1.83 Å) | | Cite: | Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
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1ZRM
 | | CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE | | Descriptor: | L-2-HALOACID DEHALOGENASE, butanoic acid | | Authors: | Li, Y.-F, Hata, Y, Fujii, T, Hisano, T, Nishihara, M, Kurihara, T, Esaki, N. | | Deposit date: | 1998-03-03 | | Release date: | 1999-03-23 | | Last modified: | 2023-08-09 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
J.Biol.Chem., 273, 1998
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1EWJ
 | | CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN COMPLEXED WITH BLEOMYCIN | | Descriptor: | BLEOMYCIN A2, BLEOMYCIN RESISTANCE DETERMINANT | | Authors: | Maruyama, M, Kumagai, T, Matoba, Y, Hata, Y, Sugiyama, M. | | Deposit date: | 2000-04-26 | | Release date: | 2001-04-26 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
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4YN5
 | | Catalytic domain of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase | | Descriptor: | CACODYLATE ION, Mannan endo-1,4-beta-mannosidase | | Authors: | Shimane, Y, Ohta, Y, Usami, R, Hatada, Y. | | Deposit date: | 2015-03-09 | | Release date: | 2016-03-09 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of Bacillus sp. JAMB-750 GH26 Endo-beta-1,4-mannanase
To Be Published
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3VSR
 | | Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain | | Descriptor: | Beta-fructofuranosidase | | Authors: | Tonozuka, T, Tamaki, A, Yokoi, G, Miyazaki, T, Ichikawa, M, Nishikawa, A, Ohta, Y, Hidaka, Y, Katayama, K, Hatada, Y, Ito, T, Fujita, K. | | Deposit date: | 2012-05-08 | | Release date: | 2012-08-22 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase
Enzyme.Microb.Technol., 51, 2012
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3VSS
 | | Microbacterium saccharophilum K-1 beta-fructofuranosidase catalytic domain complexed with fructose | | Descriptor: | Beta-fructofuranosidase, beta-D-fructofuranose | | Authors: | Tonozuka, T, Tamaki, A, Yokoi, G, Miyazaki, T, Ichikawa, M, Nishikawa, A, Ohta, Y, Hidaka, Y, Katayama, K, Hatada, Y, Ito, T, Fujita, K. | | Deposit date: | 2012-05-08 | | Release date: | 2012-08-22 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (1.97 Å) | | Cite: | Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase
Enzyme.Microb.Technol., 51, 2012
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1WKY
 | | Crystal structure of alkaline mannanase from Bacillus sp. strain JAMB-602: catalytic domain and its Carbohydrate Binding Module | | Descriptor: | CALCIUM ION, CHLORIDE ION, SODIUM ION, ... | | Authors: | Akita, M, Takeda, N, Hirasawa, K, Sakai, H, Kawamoto, M, Yamamoto, M, Grant, W.D, Hatada, Y, Ito, S, Horikoshi, K. | | Deposit date: | 2004-06-15 | | Release date: | 2005-06-15 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Crystallization and preliminary X-ray study of alkaline mannanase from an alkaliphilic Bacillus isolate.
Acta Crystallogr.,Sect.D, 60, 2004
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3WZ1
 | | Catalytic domain of beta-agarase from Microbulbifer thermotolerans JAMB-A94 | | Descriptor: | Agarase, GLYCEROL, SODIUM ION | | Authors: | Takagi, E, Hatada, Y, Akita, M, Ohta, Y, Yokoi, G, Miyazaki, T, Nishikawa, A, Tonozuka, T. | | Deposit date: | 2014-09-12 | | Release date: | 2014-11-19 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal structure of the catalytic domain of a GH16 beta-agarase from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94
Biosci.Biotechnol.Biochem., 79, 2015
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1GSH
 | | STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5 | | Descriptor: | GLUTATHIONE BIOSYNTHETIC LIGASE | | Authors: | Matsuda, K, Kato, H, Yamaguchi, H, Nishioka, T, Katsube, Y, Oda, J. | | Deposit date: | 1995-05-16 | | Release date: | 1996-07-11 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
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