6VRD
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![BU of 6vrd by Molmil](/molmil-images/mine/6vrd) | Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level | Descriptor: | DI(HYDROXYETHYL)ETHER, GLYCEROL, RNA (5'-R(*(OMC)P*(N7X)P*(T39)P*(C5L)P*(A2M))-D(P*(SC)P*(PST)P*(SC)P*(AS)P*(SC)P*(SC)P*(SC)P*(AS)P*(SC)P*(PST))-R(P*(6OO)P*(RFJ)P*(6OO)P*(6OO)P*(6NW))-3'), ... | Authors: | Cho, Y.-J, Butler, D. | Deposit date: | 2020-02-07 | Release date: | 2021-02-10 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.299 Å) | Cite: | Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level To Be Published
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2HLI
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![BU of 2hli by Molmil](/molmil-images/mine/2hli) | Solution structure of Crotonaldehyde-Derived N2-[3-Oxo-1(S)-methyl-propyl]-dG DNA Adduct in the 5'-CpG-3' Sequence | Descriptor: | DNA dodecamer, DNA dodecamer with S-crotonaldehyde adduct | Authors: | Cho, Y.-J, Wang, H, Kozekov, I.D, Kurtz, A.J, Jacob, J, Voehler, M, Smith, J, Harris, T.M, Rizzo, C.J, Stone, M.P. | Deposit date: | 2006-07-07 | Release date: | 2006-09-19 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Orientation of the Crotonaldehyde-Derived N(2)-[3-Oxo-1(S)-methyl-propyl]-dG DNA Adduct Hinders Interstrand Cross-Link Formation in the 5'-CpG-3' Sequence Chem.Res.Toxicol., 19, 2006
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2HMR
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![BU of 2hmr by Molmil](/molmil-images/mine/2hmr) | Solution structure of reduced interstrand cross-link arising from S-alpha-methyl-gamma-OH-1,N2-propano-2'-deoxyguanosine in the 5'-CpG-3' DNA sequence | Descriptor: | DNA dodecamer with interstrand cross-link | Authors: | Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. | Deposit date: | 2006-07-11 | Release date: | 2007-03-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
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2HMD
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![BU of 2hmd by Molmil](/molmil-images/mine/2hmd) | Stereochemistry Modulates Stability of Reduced Inter-Strand Cross-Links Arising From R- and S-alpha-methyl-gamma-OH-1,N2-propano-2'-Deoxyguanine in the 5'-CpG-3' DNA Sequence | Descriptor: | DNA dodecamer with interstrand cross-link | Authors: | Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. | Deposit date: | 2006-07-11 | Release date: | 2007-03-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
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4IKE
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![BU of 4ike by Molmil](/molmil-images/mine/4ike) | |
4JZK
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![BU of 4jzk by Molmil](/molmil-images/mine/4jzk) | |
4K46
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![BU of 4k46 by Molmil](/molmil-images/mine/4k46) | Crystal Structure of Adenylate Kinase from Photobacterium profundum | Descriptor: | ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, ... | Authors: | Cho, Y.-J, Kerns, S.J, Kern, D. | Deposit date: | 2013-04-12 | Release date: | 2014-07-16 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.01 Å) | Cite: | Alike but Different: Adenylate kinases from E. Coli, Aquifex, and P. profundum To be Published
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8SWB
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![BU of 8swb by Molmil](/molmil-images/mine/8swb) | RNase H complex with streopure ASO and RNA | Descriptor: | DI(HYDROXYETHYL)ETHER, DNA (5'-R(*(OMC)P*(N7X)P*(T39)P*(C5L)P*(A2M))-D(P*(SC)P*(PST)P*(SC)P*AP*(SC)P*(SC)P*(RC)P*(AS)P*(SC)P*(PST))-R(P*(6OO)P*(RFJ)P*(6OO)P*(6OO)P*(6NW))-3'), GLYCEROL, ... | Authors: | Cho, Y.-J, Iwamoto, N. | Deposit date: | 2023-05-18 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level To Be Published
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8SWC
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![BU of 8swc by Molmil](/molmil-images/mine/8swc) | |
4JLB
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![BU of 4jlb by Molmil](/molmil-images/mine/4jlb) | |
4JLP
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![BU of 4jlp by Molmil](/molmil-images/mine/4jlp) | |
4JL5
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![BU of 4jl5 by Molmil](/molmil-images/mine/4jl5) | |
4JL6
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![BU of 4jl6 by Molmil](/molmil-images/mine/4jl6) | |
4JLO
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![BU of 4jlo by Molmil](/molmil-images/mine/4jlo) | |
4JL8
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![BU of 4jl8 by Molmil](/molmil-images/mine/4jl8) | |
4JLD
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![BU of 4jld by Molmil](/molmil-images/mine/4jld) | |
4JLA
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![BU of 4jla by Molmil](/molmil-images/mine/4jla) | |
4JKY
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![BU of 4jky by Molmil](/molmil-images/mine/4jky) | |
3SR0
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![BU of 3sr0 by Molmil](/molmil-images/mine/3sr0) | |
4CF7
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![BU of 4cf7 by Molmil](/molmil-images/mine/4cf7) | Crystal structure of adenylate kinase from Aquifex aeolicus with MgADP bound | Descriptor: | ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINASE, ... | Authors: | Kerns, S.J, Agafonov, R.V, Cho, Y.-J, Pontiggia, F, Otten, R, Pachov, D.V, Kutter, S, Phung, L.A, Murphy, P.N, Thai, V, Hagan, M.F, Kern, D. | Deposit date: | 2013-11-13 | Release date: | 2014-12-03 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.594 Å) | Cite: | The Energy Landscape of Adenylate Kinase During Catalysis. Nat.Struct.Mol.Biol., 22, 2015
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4C3R
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![BU of 4c3r by Molmil](/molmil-images/mine/4c3r) | Structure of dephosphorylated Aurora A (122-403) bound to AMPPCP | Descriptor: | AURORA KINASE A, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | Authors: | Zorba, A, Kutter, S, Cho, Y.-J, Kern, D. | Deposit date: | 2013-08-26 | Release date: | 2014-05-28 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Molecular Mechanism of Aurora a Kinase Autophosphorylation and its Allosteric Activation by Tpx2. Elife, 3, 2014
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1QL5
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![BU of 1ql5 by Molmil](/molmil-images/mine/1ql5) | DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT | Descriptor: | DNA (5'-D(*CP*GP*CP*AP*TP*+TP*AP*CP*GP*C)- 3'), DNA (5'-D(*GP*CP*GP*TP*TP*AP*TP*GP*CP*G)-3') | Authors: | Lee, J.-H, Hwang, G.-S, Choi, B.-S. | Deposit date: | 1999-08-24 | Release date: | 2000-04-10 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution Structure of a DNA Decamer Duplex Containing the 3' T.T Base Pair of the Cis-Syn Cyclobutane Pyrimidine Dimer: Implication for the Mutagenic Property of the Cis-Syn Dimer. Nucleic Acids Res., 28, 2000
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1QKG
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![BU of 1qkg by Molmil](/molmil-images/mine/1qkg) | DNA DECAMER DUPLEX CONTAINING T-T DEWAR PHOTOPRODUCT | Descriptor: | DNA (5'-D(*CP*GP*CP*AP*(HYD)TP*+TP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3') | Authors: | Lee, J.-H, Bae, S.-H, Choi, Y.-J, Choi, B.-S. | Deposit date: | 1999-07-20 | Release date: | 2000-05-11 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | The Dewar Photoproduct of Thymidylyl(3'-->5')-Thymidine (Dewar Product) Exhibits Mutagenic Behavior in Accordance with the "A Rule". Proc.Natl.Acad.Sci.USA, 97, 2000
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