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5V7V
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BU of 5v7v by Molmil
Cryo-EM structure of ERAD-associated E3 ubiquitin-protein ligase component HRD3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ERAD-associated E3 ubiquitin-protein ligase component HRD3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Mi, W, Schoebel, S, Stein, A, Rapoport, T.A, Liao, M.
登録日2017-03-20
公開日2017-08-16
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
5V6P
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BU of 5v6p by Molmil
CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1
著者Schoebel, S, Mi, W, Stein, A, Rapoport, T.A, Liao, M.
登録日2017-03-17
公開日2017-08-16
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3.
Nature, 548, 2017
7R9D
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BU of 7r9d by Molmil
Crystal structure of Nb_0 in complex with Fab_8D3
分子名称: Fab 8D3 heavy chain, Fab 8D3 light chain, Nanobody N0
著者Wu, X.D, Rapoport, T.A.
登録日2021-06-29
公開日2021-10-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies).
Proc.Natl.Acad.Sci.USA, 118, 2021
7RXD
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BU of 7rxd by Molmil
CryoEM structure of RBD domain of COVID-19 in complex with Legobody
分子名称: Fab_8D3_2 heavy chain, Fab_8D3_2 light chain, Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G, ...
著者Wu, X.D, Rapoport, T.A.
登録日2021-08-22
公開日2021-10-06
最終更新日2021-10-20
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies).
Proc.Natl.Acad.Sci.USA, 118, 2021
7RXC
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BU of 7rxc by Molmil
CryoEM structure of KDELR with Legobody
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ER lumen protein-retaining receptor 2, Fab_8D3_2 heavy chain, ...
著者Wu, X.D, Rapoport, T.A.
登録日2021-08-22
公開日2021-10-06
最終更新日2021-10-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies).
Proc.Natl.Acad.Sci.USA, 118, 2021
3J45
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BU of 3j45 by Molmil
Structure of a non-translocating SecY protein channel with the 70S ribosome
分子名称: 23S ribosomal RNA, 50S ribosomal protein L23, 50S ribosomal protein L24, ...
著者Menetret, J.F, Park, E, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A, Akey, C.W.
登録日2013-06-18
公開日2013-10-23
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (9.5 Å)
主引用文献Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3J46
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BU of 3j46 by Molmil
Structure of the SecY protein translocation channel in action
分子名称: 23S ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L23P, ...
著者Akey, C.W, Park, E, Menetret, J.F, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A.
登録日2013-06-18
公開日2013-10-23
最終更新日2019-07-03
実験手法ELECTRON MICROSCOPY (10.1 Å)
主引用文献Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3KP9
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BU of 3kp9 by Molmil
Structure of a bacterial homolog of vitamin K epoxide reductase
分子名称: MERCURY (II) ION, UBIQUINONE-10, VKORC1/thioredoxin domain protein
著者Li, W, Schulman, S, Dutton, R.J, Boyd, D, Beckwith, J, Rapoport, T.A.
登録日2009-11-16
公開日2010-02-09
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structure of a bacterial homologue of vitamin K epoxide reductase.
Nature, 463, 2010
3KP8
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BU of 3kp8 by Molmil
The thioredoxin-like domain of a VKOR homolog from Synechococcus sp.
分子名称: VKORC1/thioredoxin domain protein
著者Li, W, Schulman, S, Dutton, R.J, Boyd, D, Beckwith, J, Rapoport, T.A.
登録日2009-11-15
公開日2010-03-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structure of a bacterial homologue of vitamin K epoxide reductase.
Nature, 463, 2010
3DL8
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BU of 3dl8 by Molmil
Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA
分子名称: Preprotein translocase subunit secY, Protein translocase subunit secA, Protein-export membrane protein secG, ...
著者Nam, Y, Zimmer, J, Rapoport, T.A.
登録日2008-06-26
公開日2008-12-02
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (7.5 Å)
主引用文献Structure of a complex of the ATPase SecA and the protein-translocation channel.
Nature, 455, 2008
3DIN
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BU of 3din by Molmil
Crystal structure of the protein-translocation complex formed by the SecY channel and the SecA ATPase
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Zimmer, J, Nam, Y, Rapoport, T.A.
登録日2008-06-20
公開日2008-10-07
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Structure of a complex of the ATPase SecA and the protein-translocation channel.
Nature, 455, 2008
6VK3
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BU of 6vk3 by Molmil
CryoEM structure of Hrd3/Yos9 complex
分子名称: Hrd3, Protein OS-9 homolog
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2020-05-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VJZ
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BU of 6vjz by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 complex of the expected topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK1
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BU of 6vk1 by Molmil
CryoEM structure of Hrd1/Hrd3 part from Hrd1-Usa1/Der1/Hrd3 complex
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VK0
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BU of 6vk0 by Molmil
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 of the flipped topology
分子名称: Degradation in the endoplasmic reticulum protein 1, ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3, ...
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
6VJY
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BU of 6vjy by Molmil
Cryo-EM structure of Hrd1/Hrd3 monomer
分子名称: ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者Wu, X, Rapoport, T.A.
登録日2020-01-18
公開日2020-04-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex.
Science, 368, 2020
1RH5
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BU of 1rh5 by Molmil
The structure of a protein conducting channel
分子名称: Preprotein translocase secE subunit, Preprotein translocase secY subunit, SecBeta
著者van den Berg, B, Clemons Jr, W.M, Collinson, I, Modis, Y, Hartmann, E, Harrison, S.C, Rapoport, T.A.
登録日2003-11-13
公開日2004-01-06
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献X-ray structure of a protein-conducting channel
Nature, 427, 2004
1RHZ
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BU of 1rhz by Molmil
The structure of a protein conducting channel
分子名称: Preprotein translocase secE subunit, Preprotein translocase secY subunit, SecBeta
著者van den Berg, B, Clemons Jr, W.M, Collinson, I, Modis, Y, Hartmann, E, Harrison, S.C, Rapoport, T.A.
登録日2003-11-15
公開日2004-01-06
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献X-ray structure of a protein-conducting channel.
Nature, 427, 2004
1TF2
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BU of 1tf2 by Molmil
Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Preprotein translocase secA subunit
著者Osborne, A.R, Clemons Jr, W.M, Rapoport, T.A.
登録日2004-05-26
公開日2004-08-03
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A large conformational change of the translocation ATPase SecA.
Proc.Natl.Acad.Sci.USA, 101, 2004
1TF5
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BU of 1tf5 by Molmil
Crystal structure of SecA in an open conformation from Bacillus Subtilis
分子名称: Preprotein translocase secA subunit
著者Osborne, A.R, Clemons Jr, W.M, Rapoport, T.A.
登録日2004-05-26
公開日2004-08-03
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献A large conformational change of the translocation ATPase SecA.
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1L
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BU of 1t1l by Molmil
Crystal structure of the long-chain fatty acid transporter FadL
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者van den Berg, B, Black, P.N, Clemons Jr, W.M, Rapoport, T.A.
登録日2004-04-16
公開日2004-06-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the long-chain fatty acid transporter FadL.
Science, 304, 2004
1T16
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BU of 1t16 by Molmil
Crystal structure of the bacterial fatty acid transporter FadL from Escherichia coli
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, COPPER (II) ION, LAURYL DIMETHYLAMINE-N-OXIDE, ...
著者van den Berg, B, Black, P.N, Clemons Jr, W.M, Rapoport, T.A.
登録日2004-04-15
公開日2004-06-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the long-chain fatty acid transporter FadL.
Science, 304, 2004
7T9X
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BU of 7t9x by Molmil
Saccharomyces cerevisiae Pex12 RING domain
分子名称: Peroxisome assembly protein 12, ZINC ION
著者Feng, P, Rapoport, T.
登録日2021-12-20
公開日2022-06-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.
Nature, 607, 2022
7T92
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BU of 7t92 by Molmil
Structure of the peroxisomal retro-translocon formed by a heterotrimeric ubiquitin ligase complex
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, CHOLESTEROL, Fab heavy chain, ...
著者Peiqiang, F, Tom, R.
登録日2021-12-17
公開日2022-07-06
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.
Nature, 607, 2022
3QNU
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BU of 3qnu by Molmil
Crystal structure of the cytosolic domain of human atlastin-1 in complex with GDP, hexagonal form
分子名称: Atlastin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Liu, X.
登録日2011-02-09
公開日2011-03-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of the atlastin GTPase provide insight into homotypic fusion of endoplasmic reticulum membranes.
Proc.Natl.Acad.Sci.USA, 108, 2011

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