8RXU
| Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P21 | Descriptor: | CALCIUM ION, HEME C, Octaheme nitrite reductase, ... | Authors: | Polyakov, K.M, Safonova, T.N, Osipov, E, Popov, A.N, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-02-08 | Release date: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.737 Å) | Cite: | Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P21 To Be Published
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8RVM
| Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P63 | Descriptor: | CALCIUM ION, HEME C, Octaheme nitrite c cytochrome c reductase, ... | Authors: | Polyakov, K.M, Safoonova, T.N, Osipov, E, Popov, A.N, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-02-01 | Release date: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P63 To Be Published
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8RV0
| Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in complex with nitrite | Descriptor: | CALCIUM ION, HEME C, NITRIC OXIDE, ... | Authors: | Polyakov, K.M, Safonova, T.N, Osipov, E, Popov, A.N, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2024-01-31 | Release date: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in complex with nitrite To Be Published
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6UWE
| Crystal structure of recombinant thiocyanate dehydrogenase from Thioalkalivibrio paradoxus saturated with copper | Descriptor: | COPPER (II) ION, UNKNOWN ATOM OR ION, thiocyanate dehydrogenase | Authors: | Shabalin, I.G, Osipov, E, Tikhonova, T.V, Rakitina, T.V, Boyko, K.M, Popov, V.O. | Deposit date: | 2019-11-05 | Release date: | 2019-11-27 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase. Proc.Natl.Acad.Sci.USA, 117, 2020
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3RKH
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite (full occupancy) | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O. | Deposit date: | 2011-04-18 | Release date: | 2011-06-15 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity. Acta Crystallogr.,Sect.D, 68, 2012
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3RR5
| DNA ligase from the archaeon Thermococcus sp. 1519 | Descriptor: | DNA ligase, MAGNESIUM ION | Authors: | Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Mardanov, A.V, Popov, V.O, Polyakov, K.M, Ravin, N.V, Shabalin, I.G, Skryabin, K.G, Stekhanova, T.N, Kovalchuk, M.V. | Deposit date: | 2011-04-29 | Release date: | 2012-04-11 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (3.018 Å) | Cite: | ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain. Acta Crystallogr.,Sect.F, 68, 2012
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3S7W
| Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine | Descriptor: | AZIDE ION, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2011-05-27 | Release date: | 2011-07-27 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Structure of the TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with an oxidized Gln360 in a complex with hydroxylamine To be Published
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3SCE
| Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb) | Descriptor: | 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Popov, V.O. | Deposit date: | 2011-06-07 | Release date: | 2011-07-06 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity. Acta Crystallogr.,Sect.D, 68, 2012
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3TN7
| Crystal structure of short-chain alcohol dehydrogenase from hyperthermophilic archaeon Thermococcus sibiricus complexed with 5-hydroxy-NADP | Descriptor: | 5-hydroxy-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, GLYCEROL, Short-chain alcohol dehydrogenase | Authors: | Boyko, K.M, Polyakov, K.M, Bezsudnova, E.Y, Stekhanova, T.N, Gumerov, V.M, Mardanov, A.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O. | Deposit date: | 2011-09-01 | Release date: | 2012-08-15 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus. Biochimie, 94, 2012
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3UU9
| Structure of the free TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase | Descriptor: | CALCIUM ION, Eight-heme nitrite reductase, HEME C, ... | Authors: | Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O. | Deposit date: | 2011-11-28 | Release date: | 2012-01-25 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity. Acta Crystallogr.,Sect.D, 68, 2012
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4NMK
| Thermostable aldehyde dehydrogenase from Pyrobaculum sp. crystallized in microgravity (complex with NADP+) | Descriptor: | Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Petrova, T, Boyko, K.M, Bezsudnova, E.Y, Mardanov, A.V, Gumerov, V.M, Ravin, N.V, Popov, V.O. | Deposit date: | 2013-11-15 | Release date: | 2014-11-19 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.898 Å) | Cite: | Thermostable aldehyde dehydrogenase from Pyrobaculum sp. crystallized in microgravity (complex with NADP+) To be Published
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4NPA
| Scrystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup | Descriptor: | DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Putative uncharacterized protein, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Dorovatovsky, P.V, Lipkin, A.V, Minor, W, Shumilin, I.A, Popov, V.O. | Deposit date: | 2013-11-21 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of protein with unknown function from Vibrio cholerae at P22121 spacegroup To be Published
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4NPO
| Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup | Descriptor: | ACETATE ION, ACETYL GROUP, GLYCEROL, ... | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korgenevsky, D.A, Shabalin, I.G, Shumilin, I.A, Dorovatovsky, P.V, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-22 | Release date: | 2013-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Crystal structure of protein with unknown function at P61 spacegroup To be Published
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4NS4
| Crystal structure of cold-active estarase from Psychrobacter cryohalolentis K5T | Descriptor: | Alpha/beta hydrolase fold protein | Authors: | Boyko, K.M, Petrovskaya, L.E, Gorbacheva, M.A, Korgenevsky, D.A, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Lipkin, A.V, Popov, V.O. | Deposit date: | 2013-11-28 | Release date: | 2015-01-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Three-dimentional structure of an esterse from Psychrobacter cryohalolentis K5T provides clues to unusual thermostability of a cold-active enzyme To be Published
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4NMJ
| Thermostable aldehyde dehydrogenase from Pyrobaculum sp. complexed with NADP+ at 2 A resolution | Descriptor: | Aldehyde dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Petrova, T, Boyko, K.M, Bezsudnova, E.Y, Mardanov, A.V, Gumerov, V.M, Ravin, N.V, Popov, V.O. | Deposit date: | 2013-11-15 | Release date: | 2014-11-19 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.002 Å) | Cite: | Thermostable aldehyde dehydrogenase from Pyrobaculum sp. complexed with NADP+ at 2 A resolution To be Published
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5JFQ
| Geranylgeranyl Pyrophosphate Synthetase from archaeon Geoglobus acetivorans | Descriptor: | Geranylgeranyl Pyrophosphate Synthetase | Authors: | Petrova, T, Boyko, K.M, Nikolaeva, A.Y, Stekhanova, T.N, Mardanov, A.V, Rakitin, A.L, Ravin, N.V, Popov, V.O. | Deposit date: | 2016-04-19 | Release date: | 2017-05-24 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.51 Å) | Cite: | Structural characterization of geranylgeranyl pyrophosphate synthase GACE1337 from the hyperthermophilic archaeon Geoglobus acetivorans. Extremophiles, 22, 2018
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5L8Z
| Structure of thermostable DNA-binding HU protein from micoplasma Spiroplasma melliferum | Descriptor: | DNA-binding protein, SODIUM ION | Authors: | Boyko, K.M, Gorbacheva, M.A, Rakitina, T.V, Korzhenevskiy, D.A, Kamashev, D.E, Vanyushkina, A.A, Lipkin, A.V, Popov, V.O. | Deposit date: | 2016-06-09 | Release date: | 2016-06-22 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3. Sci Rep, 6, 2016
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5MWC
| Crystal structure of the genetically-encoded green calcium indicator NTnC in its calcium bound state | Descriptor: | CALCIUM ION, genetically-encoded green calcium indicator NTnC | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Rakitina, T.V, Popov, V.O, Subach, O.M, Barykina, N.V, Subach, F.V. | Deposit date: | 2017-01-18 | Release date: | 2018-02-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Enchanced variant of genetically-encoded green calcium indicator NTnC To Be Published
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5N1T
| Crystal structure of complex between flavocytochrome c and copper chaperone CopC from T. paradoxus | Descriptor: | COPPER (II) ION, CopC, Cytochrome C, ... | Authors: | Osipov, E.M, Lilina, A.V, Tikhonova, T.V, Tsallagov, S.I, Popov, V.O. | Deposit date: | 2017-02-06 | Release date: | 2018-02-28 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structure of the flavocytochrome c sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio paradoxusARh 1. Acta Crystallogr D Struct Biol, 74, 2018
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7Z79
| Crystal structure of aminotransferase-like protein from Variovorax paradoxus | Descriptor: | Aminotransferase, class 4, DI(HYDROXYETHYL)ETHER, ... | Authors: | Boyko, K.M, Matyuta, I.O, Nikolaeva, A.Y, Khrenova, M.G, Rakitina, T.V, Popov, V.O, Bezsudnova, E.Y. | Deposit date: | 2022-03-15 | Release date: | 2022-04-13 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A Puzzling Protein from Variovorax paradoxus Has a PLP Fold Type IV Transaminase Structure and Binds PLP without Catalytic Lysine Crystals, 12, 2022
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7ZVQ
| Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP) in the apoform, S206V mutant | Descriptor: | Carotenoid-binding protein | Authors: | Sluchanko, N.N, Boyko, K.M, Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Maksimov, E.G, Popov, V.O. | Deposit date: | 2022-05-17 | Release date: | 2022-10-26 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for the carotenoid binding and transport function of a START domain. Structure, 30, 2022
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7ZTR
| Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP) in the apoform, W232F mutant | Descriptor: | Carotenoid-binding protein | Authors: | Sluchanko, N.N, Boyko, K.M, Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Maksimov, E.G, Popov, V.O. | Deposit date: | 2022-05-11 | Release date: | 2022-10-26 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Silkworm carotenoprotein as an efficient carotenoid extractor, solubilizer and transporter. Int.J.Biol.Macromol., 223, 2022
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7ZTU
| Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP) in the apoform, D162L mutant | Descriptor: | Carotenoid-binding protein | Authors: | Sluchanko, N.N, Boyko, K.M, Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Maksimov, E.G, Popov, V.O. | Deposit date: | 2022-05-11 | Release date: | 2022-10-26 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Silkworm carotenoprotein as an efficient carotenoid extractor, solubilizer and transporter. Int.J.Biol.Macromol., 223, 2022
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7ZTQ
| Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP) in the apoform | Descriptor: | Carotenoid-binding protein, GLYCEROL | Authors: | Sluchanko, N.N, Boyko, K.M, Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Maksimov, E.G, Popov, V.O. | Deposit date: | 2022-05-11 | Release date: | 2022-10-26 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Silkworm carotenoprotein as an efficient carotenoid extractor, solubilizer and transporter. Int.J.Biol.Macromol., 223, 2022
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7ZVR
| Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP) complexed with zeaxanthin | Descriptor: | (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, Carotenoid-binding protein | Authors: | Sluchanko, N.N, Boyko, K.M, Varfolomeeva, L.A, Slonimskiy, Y.B, Egorkin, N.A, Maksimov, E.G, Popov, V.O. | Deposit date: | 2022-05-17 | Release date: | 2022-10-26 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis for the carotenoid binding and transport function of a START domain. Structure, 30, 2022
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