5L8Z

Structure of thermostable DNA-binding HU protein from micoplasma Spiroplasma melliferum

Replaces:  5CVX

Summary for 5L8Z

DescriptorDNA-binding protein, SODIUM ION (3 entities in total)
Functional Keywordsthermostable, dna-binding, hu-protein, spiroplasma melliferum, histone-like, nap, dna binding protein
Biological sourceSpiroplasma melliferum KC3
Total number of polymer chains1
Total molecular weight10428.89
Authors
Boyko, K.M.,Gorbacheva, M.A.,Rakitina, T.V.,Korzhenevskiy, D.A.,Kamashev, D.E.,Vanyushkina, A.A.,Lipkin, A.V.,Popov, V.O. (deposition date: 2016-06-09, release date: 2016-06-22, Last modification date: 2017-04-12)
Primary citation
Boyko, K.M.,Rakitina, T.V.,Korzhenevskiy, D.A.,Vlaskina, A.V.,Agapova, Y.K.,Kamashev, D.E.,Kleymenov, S.Y.,Popov, V.O.
Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3.
Sci Rep, 6:36366-36366, 2016
PubMed: 27808161 (PDB entries with the same primary citation)
DOI: 10.1038/srep36366
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.4 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.212601.4%2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5l8z
no rotation
Molmil generated image of 5l8z
rotated about x axis by 90°
Molmil generated image of 5l8z
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5l8z
no rotation
Molmil generated image of 5l8z
rotated about x axis by 90°
Molmil generated image of 5l8z
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5l8z.pdb1.gz [35.92 KB])