Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7WLK
DownloadVisualize
BU of 7wlk by Molmil
CryoEM structure of human low-voltage activated T-type calcium channel Cav3.3 in complex with Otilonium Bromide(OB)
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-[diethyl(methyl)-$l^{4}-azanyl]ethyl 4-[(2-octoxyphenyl)carbonylamino]benzoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:He, L, Yu, Z, Dong, Y, Chen, Q, Zhao, Y.
Deposit date:2022-01-13
Release date:2022-05-04
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure, gating, and pharmacology of human Ca V 3.3 channel.
Nat Commun, 13, 2022
7WLL
DownloadVisualize
BU of 7wll by Molmil
CryoEM structure of human low-voltage activated T-type calcium channel Cav3.3 in complex with pimozide(PMZ)
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one, ...
Authors:He, L, Yu, Z, Dong, Y, Chen, Q, Zhao, Y.
Deposit date:2022-01-13
Release date:2022-05-04
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure, gating, and pharmacology of human Ca V 3.3 channel.
Nat Commun, 13, 2022
7WLI
DownloadVisualize
BU of 7wli by Molmil
CryoEM structure of human low-voltage activated T-type calcium channel CaV3.3 (apo)
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:He, L, Yu, Z, Dong, Y, Chen, Q, Zhao, Y.
Deposit date:2022-01-13
Release date:2022-05-04
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure, gating, and pharmacology of human Ca V 3.3 channel.
Nat Commun, 13, 2022
7WLJ
DownloadVisualize
BU of 7wlj by Molmil
CryoEM structure of human low-voltage activated T-type calcium channel Cav3.3 in complex with mibefradil (MIB)
Descriptor: (1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:He, L, Yu, Z, Dong, Y, Chen, Q, Zhao, Y.
Deposit date:2022-01-13
Release date:2022-05-04
Last modified:2022-05-25
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure, gating, and pharmacology of human Ca V 3.3 channel.
Nat Commun, 13, 2022
7F04
DownloadVisualize
BU of 7f04 by Molmil
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with Heme and ATP.
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, ADENOSINE-5'-TRIPHOSPHATE, Cytochrome c biogenesis ATP-binding export protein CcmA, ...
Authors:Li, J, Zheng, W, Gu, M, Zhang, K, Zhu, J.P.
Deposit date:2021-06-03
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structures of the CcmABCD heme release complex at multiple states.
Nat Commun, 13, 2022
7F03
DownloadVisualize
BU of 7f03 by Molmil
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with ANP
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, ...
Authors:Li, J, Zheng, W, Gu, M, Zhang, K, Zhu, J.P.
Deposit date:2021-06-03
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Structures of the CcmABCD heme release complex at multiple states.
Nat Commun, 13, 2022
7YR5
DownloadVisualize
BU of 7yr5 by Molmil
Embigin facilitates monocarboxylate transporter 1 localization to plasma membrane and transition to a decoupling state
Descriptor: Embigin, Monocarboxylate transporter 1
Authors:Xu, B, Ye, S.
Deposit date:2022-08-08
Release date:2022-09-28
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Embigin facilitates monocarboxylate transporter 1 localization to the plasma membrane and transition to a decoupling state.
Cell Rep, 40, 2022
4GR7
DownloadVisualize
BU of 4gr7 by Molmil
The human W42R Gamma D-Crystallin Mutant Structure at 1.7A Resolution
Descriptor: Gamma-crystallin D, PHOSPHATE ION
Authors:Ji, F, Jung, J, Koharudin, L.M.I, Gronenborn, A.M.
Deposit date:2012-08-24
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The human W42R gamma D-crystallin mutant structure provides a link between congenital and age-related cataracts.
J.Biol.Chem., 288, 2013
8H7Z
DownloadVisualize
BU of 8h7z by Molmil
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Descriptor: BA7535 fab, Spike glycoprotein
Authors:Liu, Z, Yan, A, Gao, Y.
Deposit date:2022-10-21
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants.
Nat Commun, 15, 2024
8H7L
DownloadVisualize
BU of 8h7l by Molmil
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BA7535 fab heavt chain, ...
Authors:Liu, Z, Yan, A, Gao, Y.
Deposit date:2022-10-20
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants.
Nat Commun, 15, 2024
8KG8
DownloadVisualize
BU of 8kg8 by Molmil
Yeast replisome in state II
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG9
DownloadVisualize
BU of 8kg9 by Molmil
Yeast replisome in state III
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.52 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG6
DownloadVisualize
BU of 8kg6 by Molmil
Yeast replisome in state I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8K14
DownloadVisualize
BU of 8k14 by Molmil
X-ray crystal structure of 18a in BRD4(1)
Descriptor: 4-[8-methoxy-2-methyl-1-(1-phenylethyl)imidazo[4,5-c]quinolin-7-yl]-3,5-dimethyl-1,2-oxazole, Bromodomain-containing protein 4
Authors:Xu, H, Shen, H, Zhang, Y, Xu, Y, Li, R.
Deposit date:2023-07-10
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Discovery of (R)-4-(8-methoxy-2-methyl-1-(1-phenylethy)-1H-imidazo[4,5-c]quinnolin-7-yl)-3,5-dimethylisoxazole as a potent and selective BET inhibitor for treatment of acute myeloid leukemia (AML) guided by FEP calculation.
Eur.J.Med.Chem., 263, 2024
7T5I
DownloadVisualize
BU of 7t5i by Molmil
Crystal Structure of Strictosidine Synthase in complex with R-IPA(2-(1H-indol-3-yl) propan-1-amine)
Descriptor: (2R)-2-(1H-indol-3-yl)propan-1-amine, Strictosidine synthase
Authors:Liu, H, Panjikar, S, Futamura, Y, Shao, N, Osada, H, Zou, H.
Deposit date:2021-12-12
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Beta-Branched Tryptamine Provoked Non Sandwich-Like-Mode Catalysis of Strictosidine Synthase to Antimalarial Indole Alkaloids
to be published
7T5J
DownloadVisualize
BU of 7t5j by Molmil
Crystal Structure of Strictosidine Synthase in complex with S-IPA (2-(1H-indol-3-yl) propan-1-amine)
Descriptor: (2S)-2-(1H-indol-3-yl)propan-1-amine, Strictosidine synthase
Authors:Liu, H, Panjikar, S, Futamura, Y, Shao, N, Osada, H, Zou, H.
Deposit date:2021-12-12
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:beta-Branched Tryptamine Provoked Non Sandwich-Like-Mode Catalysis of Strictosidine Synthase to Antimalarial Indole Alkaloids
to be published
7UGW
DownloadVisualize
BU of 7ugw by Molmil
M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin
Descriptor: DNA (46-MER), DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Hauk, G, Imai, Y, Lewis, K, Berger, J.M.
Deposit date:2022-03-25
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Evybactin is a DNA gyrase inhibitor that selectively kills Mycobacterium tuberculosis.
Nat.Chem.Biol., 18, 2022
7VFP
DownloadVisualize
BU of 7vfp by Molmil
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with heme and single ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, ...
Authors:Li, J, Zheng, W, Gu, M, Zhang, K, Zhu, J.P.
Deposit date:2021-09-13
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Structures of the CcmABCD heme release complex at multiple states.
Nat Commun, 13, 2022
7VFJ
DownloadVisualize
BU of 7vfj by Molmil
Cytochrome c-type biogenesis protein CcmABCD
Descriptor: Cytochrome c biogenesis ATP-binding export protein CcmA, Heme exporter protein B, Heme exporter protein C, ...
Authors:Zhu, J.P, Zhang, K, Li, J, Zheng, W, Gu, M.
Deposit date:2021-09-13
Release date:2022-11-09
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Structures of the CcmABCD heme release complex at multiple states.
Nat Commun, 13, 2022
7WQO
DownloadVisualize
BU of 7wqo by Molmil
Structure of Adeno-associated virus serotype PHP.eB
Descriptor: Capsid protein VP1
Authors:Xu, G, Lou, Z.
Deposit date:2022-01-25
Release date:2022-06-15
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural basis for the neurotropic AAV9 and the engineered AAVPHP.eB recognition with cellular receptors.
Mol Ther Methods Clin Dev, 26, 2022
7WJX
DownloadVisualize
BU of 7wjx by Molmil
Adeno-associated virus serotype 9 in complex with AAVR
Descriptor: Capsid protein VP1, Dyslexia-associated protein KIAA0319-like protein
Authors:Xu, G, Lou, Z.
Deposit date:2022-01-08
Release date:2022-06-15
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural basis for the neurotropic AAV9 and the engineered AAVPHP.eB recognition with cellular receptors.
Mol Ther Methods Clin Dev, 26, 2022
7WJW
DownloadVisualize
BU of 7wjw by Molmil
Structure of Adeno-associated virus serotype 9
Descriptor: Capsid protein VP1
Authors:Xu, G, Lou, Z.
Deposit date:2022-01-08
Release date:2022-06-15
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Structural basis for the neurotropic AAV9 and the engineered AAVPHP.eB recognition with cellular receptors.
Mol Ther Methods Clin Dev, 26, 2022
7WQP
DownloadVisualize
BU of 7wqp by Molmil
Adeno-associated virus serotype PHP.eB in complex with AAVR
Descriptor: Capsid protein VP1, Dyslexia-associated protein KIAA0319-like protein
Authors:Xu, G, Lou, Z.
Deposit date:2022-01-25
Release date:2022-06-15
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Structural basis for the neurotropic AAV9 and the engineered AAVPHP.eB recognition with cellular receptors.
Mol Ther Methods Clin Dev, 26, 2022
7XE0
DownloadVisualize
BU of 7xe0 by Molmil
Cryo-EM structure of plant NLR Sr35 resistosome
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, Sr35
Authors:Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
Deposit date:2022-03-29
Release date:2022-09-28
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XDS
DownloadVisualize
BU of 7xds by Molmil
Crystal structure of wheat stem rust effector AvrSr35
Descriptor: AvrSr35
Authors:Ouyang, S.Y, Zhao, Y.B.
Deposit date:2022-03-28
Release date:2022-09-28
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon