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1UAO
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BU of 1uao by Molmil
NMR Structure of designed protein, Chignolin, consisting of only ten amino acids (Ensembles)
分子名称: Chignolin
著者Honda, S, Yamasaki, K.
登録日2003-03-13
公開日2004-04-13
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献10 residue folded peptide designed by segment statistics
Structure, 12, 2004
2RVD
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BU of 2rvd by Molmil
NMR STRUCTURE of A MUTANT OF CHIGNOLIN, CLN025
分子名称: CLN025
著者Kato, Y, Ishimura, M, Honda, S.
登録日2015-07-14
公開日2015-08-12
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Crystal structure of a ten-amino acid protein
J.Am.Chem.Soc., 130, 2008
5AWL
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BU of 5awl by Molmil
CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025
分子名称: A mutant of Chignolin, CLN025
著者Akiba, T, Ishimura, M, Odahara, T, Harata, K, Honda, S.
登録日2015-07-05
公開日2015-08-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Crystal structure of a ten-amino acid protein
J.Am.Chem.Soc., 130, 2008
2RR7
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BU of 2rr7 by Molmil
Microtubule Binding Domain of DYNEIN-C
分子名称: Dynein heavy chain 9
著者Kato, Y, Yagi, T, Ohki, S, Burgess, S, Honda, S, Kamiya, R, Tanokura, M.
登録日2010-06-04
公開日2011-06-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the microtubule-binding domain of flagellar dynein
Structure, 22, 2014
2RT4
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BU of 2rt4 by Molmil
NMR Structure of designed protein, AF.2A1, (Ensembles)
分子名称: AF.2A1
著者Watanabe, H, Yamasaki, K, Honda, S.
登録日2013-04-18
公開日2014-01-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Tracing primordial protein evolution through structurally guided stepwise segment elongation.
J.Biol.Chem., 289, 2014
5GW9
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BU of 5gw9 by Molmil
Crystal structure of C163, a backbone circularized G-CSF
分子名称: Granulocyte colony-stimulating factor
著者Miyafusa, T, Honda, S.
登録日2016-09-09
公開日2017-09-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural insights into the backbone-circularized granulocyte colony-stimulating factor containing a short connector.
Biochem. Biophys. Res. Commun., 500, 2018
5VY1
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BU of 5vy1 by Molmil
Crystal structure of the extended Tudor domain from BmPAPI
分子名称: Tudor and KH domain-containing protein homolog
著者Hubbard, P.A, Pan, X, McNally, R, Ohtaki, A, Honda, S, Kirino, Y, Murali, R.
登録日2017-05-24
公開日2017-06-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
To Be Published
5VQH
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BU of 5vqh by Molmil
Crystal structure of the extended Tudor domain from BmPAPI in complex with sDMA
分子名称: N3, N4-DIMETHYLARGININE, Tudor and KH domain-containing protein homolog
著者Hubbard, P.A, Pan, X, Ohtaki, A, McNally, R, Honda, S, Kirino, Y, Murali, R.
登録日2017-05-08
公開日2017-06-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
To Be Published
5VQG
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BU of 5vqg by Molmil
Crystal structure of the extended Tudor domain from BmPAPI
分子名称: Tudor and KH domain-containing protein homolog
著者Hubbard, P.A, Pan, X, Ohtaki, A, McNally, R, Honda, S, Kirino, Y, Murali, R.
登録日2017-05-08
公開日2017-06-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
To Be Published
5ZO6
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BU of 5zo6 by Molmil
Crystal structure of C166, a backbone circularized G-CSF
分子名称: Granulocyte colony-stimulating factor
著者Shibuya, R, Miyafusa, T, Honda, S.
登録日2018-04-12
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Stabilization of backbone-circularized protein is attained by synergistic gains in enthalpy of folded structure and entropy of unfolded structure.
Febs J., 2019
2ZW0
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BU of 2zw0 by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
分子名称: Protein LG, SULFATE ION
著者Watanabe, H, Matsumaru, H, Odahara, T, Suto, K, Honda, S.
登録日2008-11-26
公開日2009-03-03
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.
J.Biol.Chem., 284, 2009
2ZW1
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BU of 2zw1 by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
分子名称: Protein LG
著者Watanabe, H, Matsumaru, H, Odahara, T, Suto, K, Honda, S.
登録日2008-11-26
公開日2009-03-03
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.
J.Biol.Chem., 284, 2009
3WKN
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BU of 3wkn by Molmil
Crystal structure of the artificial protein AFFinger p17 (AF.p17) complexed with Fc fragment of human IgG
分子名称: AFFinger p17, Ig gamma-1 chain C region, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Watanabe, H, Honda, S.
登録日2013-10-29
公開日2014-10-29
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Adaptive Assembly: Maximizing the Potential of a Given Functional Peptide with a Tailor-Made Protein Scaffold.
Chem.Biol., 22, 2015
6KMC
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BU of 6kmc by Molmil
Crystal structure of a Streptococcal protein G B1 mutant
分子名称: ACETIC ACID, Immunoglobulin G-binding protein G B1
著者Watanabe, H, Honda, S.
登録日2019-07-31
公開日2019-10-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Histidine-Mediated Intramolecular Electrostatic Repulsion for Controlling pH-Dependent Protein-Protein Interaction.
Acs Chem.Biol., 14, 2019
1BDD
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BU of 1bdd by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: STAPHYLOCOCCUS AUREUS PROTEIN A
著者Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
登録日1996-06-28
公開日1997-01-11
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1BDC
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BU of 1bdc by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, 10 STRUCTURES
分子名称: STAPHYLOCOCCUS AUREUS PROTEIN A
著者Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
登録日1996-06-28
公開日1997-01-11
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
6KE0
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BU of 6ke0 by Molmil
Crystal structure of PDE10A in complex with a triazolopyrimidine inhibitor
分子名称: 2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)-1-[(2S)-2-methyl-1,2-dihydroimidazo[1,2-a]benzimidazol-3-yl]ethanone, MAGNESIUM ION, ZINC ION, ...
著者Amano, Y, Honbou, K.
登録日2019-07-03
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Synthesis, SAR study, and biological evaluation of novel 2,3-dihydro-1H-imidazo[1,2-a]benzimidazole derivatives as phosphodiesterase 10A inhibitors.
Bioorg.Med.Chem., 27, 2019
6KDX
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BU of 6kdx by Molmil
Crystal structure of PDE10A in complex with a triazolopyrimidine inhibitor
分子名称: MAGNESIUM ION, N-[2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)ethyl]quinolin-2-amine, ZINC ION, ...
著者Amano, Y, Honbou, K.
登録日2019-07-03
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Synthesis, SAR study, and biological evaluation of novel 2,3-dihydro-1H-imidazo[1,2-a]benzimidazole derivatives as phosphodiesterase 10A inhibitors.
Bioorg.Med.Chem., 27, 2019
6KDZ
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BU of 6kdz by Molmil
Crystal structure of PDE10A in complex with a triazolopyrimidine inhibitor
分子名称: 4-[2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)ethyl]-3,7,8,10-tetrazatricyclo[7.4.0.0^{2,7}]trideca-1,3,5,8,10,12-hexaen-6-ol, MAGNESIUM ION, ZINC ION, ...
著者Amano, Y, Honbou, K.
登録日2019-07-03
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Synthesis, SAR study, and biological evaluation of novel 2,3-dihydro-1H-imidazo[1,2-a]benzimidazole derivatives as phosphodiesterase 10A inhibitors.
Bioorg.Med.Chem., 27, 2019

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