Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6XQ2
DownloadVisualize
BU of 6xq2 by Molmil
Human antibody S8V2-37 in complex with the influenza hemagglutinin head domain of A/Texas/50/2012(H3N2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:McCarthy, K.R, Harrison, S.C.
Deposit date:2020-07-09
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:A Prevalent Focused Human Antibody Response to the Influenza Virus Hemagglutinin Head Interface.
Mbio, 12, 2021
6Q0E
DownloadVisualize
BU of 6q0e by Molmil
Inferred precursor (UCA) of the human antibody lineage 652 in complex with influenza hemagglutinin head domain of A/Beijing/262/95(H1N1)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Fab heavy chain, Fab lambda light chain, ...
Authors:McCarthy, K.R, Harrison, S.C.
Deposit date:2019-08-01
Release date:2019-12-18
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Affinity maturation in a human humoral response to influenza hemagglutinin.
Proc.Natl.Acad.Sci.USA, 2019
6Q0O
DownloadVisualize
BU of 6q0o by Molmil
human antibody H2227 lineage 652 in complex with influenza hemagglutinin head domain of A/Solomon Islands/3/2006(H1N1)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:McCarthy, K.R, Harrison, S.C.
Deposit date:2019-08-02
Release date:2019-12-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Affinity maturation in a human humoral response to influenza hemagglutinin.
Proc.Natl.Acad.Sci.USA, 2019
7SWO
DownloadVisualize
BU of 7swo by Molmil
C98C7 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Descriptor: C98C7 Fab heavy chain, C98C7 Fab light chain, Spike protein S1
Authors:Windsor, I.W, Tong, P, Wesemann, D.R, Harrison, S.C.
Deposit date:2021-11-20
Release date:2022-04-27
Last modified:2022-11-09
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Sci Immunol, 7, 2022
7SWP
DownloadVisualize
BU of 7swp by Molmil
G32Q4 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Descriptor: G32Q4 Fab heavy chain, G32Q4 Fab light chain, Spike protein S1
Authors:Windsor, I.W, Tong, P, Wesemann, D.R, Harrison, S.C.
Deposit date:2021-11-20
Release date:2022-04-27
Last modified:2022-11-09
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Sci Immunol, 7, 2022
7SWN
DownloadVisualize
BU of 7swn by Molmil
G32A4 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
Descriptor: G32A4 Fab heavy chain, G32A4 Fab light chain, Spike protein S1
Authors:Windsor, I.W, Tong, P, Wesemann, D.R, Harrison, S.C.
Deposit date:2021-11-20
Release date:2022-04-27
Last modified:2022-11-09
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Sci Immunol, 7, 2022
7UMT
DownloadVisualize
BU of 7umt by Molmil
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Jenni, S, Zongli, L, Wang, Y, Bessey, T, Salgado, E.N, Schmidt, A.G, Greenberg, H.B, Jiang, B, Harrison, S.C.
Deposit date:2022-04-07
Release date:2022-07-27
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
J.Virol., 96, 2022
7UMS
DownloadVisualize
BU of 7ums by Molmil
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fab 41 heavy chain, ...
Authors:Jenni, S, Zongli, L, Wang, Y, Bessey, T, Salgado, E.N, Schmidt, A.G, Greenberg, H.B, Jiang, B, Harrison, S.C.
Deposit date:2022-04-07
Release date:2022-07-27
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
J.Virol., 96, 2022
3CRO
DownloadVisualize
BU of 3cro by Molmil
THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 CRO)
Authors:Mondragon, A, Harrison, S.C.
Deposit date:1990-07-06
Release date:1991-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The phage 434 Cro/OR1 complex at 2.5 A resolution.
J.Mol.Biol., 219, 1991
6U1X
DownloadVisualize
BU of 6u1x by Molmil
Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor (3.0 A resolution)
Descriptor: Phosphoprotein, RNA-directed RNA polymerase L, ZINC ION
Authors:Jenni, S, Bloyet, L.M, Dias-Avalos, R, Liang, B, Wheelman, S.P.J, Grigorieff, N, Harrison, S.C.
Deposit date:2019-08-17
Release date:2020-01-22
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor.
Cell Rep, 30, 2020
4QHL
DownloadVisualize
BU of 4qhl by Molmil
I3.2 (unbound) from CH103 Lineage
Descriptor: I3 heavy chain, UCA light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
4QHN
DownloadVisualize
BU of 4qhn by Molmil
I2 (unbound) from CH103 Lineage
Descriptor: I2 heavy chain, I2 light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
4QHM
DownloadVisualize
BU of 4qhm by Molmil
I3.1 (unbound) from CH103 Lineage
Descriptor: I2 light chain, I3 heavy chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
7N64
DownloadVisualize
BU of 7n64 by Molmil
SARS-CoV-2 Spike (2P) in complex with G32R7 Fab (RBD and NTD local reconstruction)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, G32R7 Fab heavy chain, ...
Authors:Windsor, I.W, Jenni, S, Tong, P, Gautam, A.K, Wesemann, D.R, Harrison, S.C.
Deposit date:2021-06-07
Release date:2021-08-04
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike.
Biorxiv, 2021
7N62
DownloadVisualize
BU of 7n62 by Molmil
SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (NTD local reconstruction)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C12C9 Fab heavy chain, C12C9 Fab light chain, ...
Authors:Windsor, I.W, Jenni, S, Bajic, G, Tong, P, Gautam, A.K, Wesemann, D.R, Harrison, S.C.
Deposit date:2021-06-07
Release date:2021-08-04
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike.
Biorxiv, 2021
2VPV
DownloadVisualize
BU of 2vpv by Molmil
Dimerization Domain of Mif2p
Descriptor: PROTEIN MIF2, SULFATE ION
Authors:Cohen, R.L, Espelin, C.W, Sorger, P.K, Harrison, S.C, Simons, K.T.
Deposit date:2008-03-05
Release date:2008-08-26
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Functional Dissection of Mif2P, a Conserved DNA-Binding Kinetochore Protein.
Mol.Biol.Cell, 19, 2008
2YFW
DownloadVisualize
BU of 2yfw by Molmil
Heterotetramer structure of Kluyveromyces lactis Cse4,H4
Descriptor: HISTONE H3-LIKE CENTROMERIC PROTEIN CSE4, HISTONE H4
Authors:Cho, U.S, Harrison, S.C.
Deposit date:2011-04-08
Release date:2011-05-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Recognition of the Centromere-Specific Histone Cse4 by the Chaperone Scm3.
Proc.Natl.Acad.Sci.USA, 108, 2011
2YFV
DownloadVisualize
BU of 2yfv by Molmil
The heterotrimeric complex of Kluyveromyces lactis Scm3, Cse4 and H4
Descriptor: HISTONE H3-LIKE CENTROMERIC PROTEIN CSE4, HISTONE H4, IODIDE ION, ...
Authors:Cho, U.S, Harrison, S.C.
Deposit date:2011-04-08
Release date:2011-05-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Recognition of the Centromere-Specific Histone Cse4 by the Chaperone Scm3.
Proc.Natl.Acad.Sci.USA, 108, 2011
5IBU
DownloadVisualize
BU of 5ibu by Molmil
6652 Fab (unbound)
Descriptor: 6652 Heavy Chain, 6652 Light Chain
Authors:Raymond, D.D, Harrison, S.C.
Deposit date:2016-02-22
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Influenza immunization elicits antibodies specific for an egg-adapted vaccine strain.
Nat. Med., 22, 2016
5IBT
DownloadVisualize
BU of 5ibt by Molmil
UCA Fab (unbound) from 6515 Lineage
Descriptor: GLYCEROL, UCA Heavy Chain, UCA Light Chain
Authors:Raymond, D.D, Harrison, S.C.
Deposit date:2016-02-22
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Influenza immunization elicits antibodies specific for an egg-adapted vaccine strain.
Nat. Med., 22, 2016
5IBL
DownloadVisualize
BU of 5ibl by Molmil
Human antibody 6639 in complex with influenza hemagglutinin H1 X-181
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6639 Heavy Chain, 6639 Light Chain, ...
Authors:Raymond, D.D, Harrison, S.C.
Deposit date:2016-02-22
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.39 Å)
Cite:Influenza immunization elicits antibodies specific for an egg-adapted vaccine strain.
Nat. Med., 22, 2016
1PER
DownloadVisualize
BU of 1per by Molmil
THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES
Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR)
Authors:Rodgers, D.W, Harrison, S.C.
Deposit date:1993-11-09
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites.
Structure, 1, 1993
1SIE
DownloadVisualize
BU of 1sie by Molmil
MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, POLYOMAVIRUS COAT PROTEIN VP1
Authors:Stehle, T, Harrison, S.C.
Deposit date:1995-12-12
Release date:1996-06-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments.
Structure, 4, 1996
1SID
DownloadVisualize
BU of 1sid by Molmil
MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, POLYOMAVIRUS COAT PROTEIN VP1
Authors:Stehle, T, Harrison, S.C.
Deposit date:1995-12-12
Release date:1996-06-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments.
Structure, 4, 1996
1VPN
DownloadVisualize
BU of 1vpn by Molmil
UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER
Descriptor: POLYOMAVIRUS VP1 PENTAMER
Authors:Stehle, T, Harrison, S.C.
Deposit date:1997-03-07
Release date:1997-05-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution structure of a polyomavirus VP1-oligosaccharide complex: implications for assembly and receptor binding.
Embo J., 16, 1997

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon