Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1UOW
DownloadVisualize
BU of 1uow by Molmil
Calcium binding domain C2B
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Cheng, Y, Sequeira, S.M, Sollner, T.H, Patel, D.J.
Deposit date:2003-09-24
Release date:2004-09-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystallographic Identification of Ca2+ and Sr2+ Coordination Sites in Synaptotagmin I C2B Domain
Protein Sci., 13, 2004
3D4I
DownloadVisualize
BU of 3d4i by Molmil
Crystal structure of the 2H-phosphatase domain of Sts-2
Descriptor: CHLORIDE ION, Sts-2 protein
Authors:Chen, Y, Carpino, N, Nassar, N.
Deposit date:2008-05-14
Release date:2009-03-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and functional characterization of the 2H-phosphatase domain of Sts-2 reveals an acid-dependent phosphatase activity.
Biochemistry, 48, 2009
1UOV
DownloadVisualize
BU of 1uov by Molmil
Calcium binding domain C2B
Descriptor: CALCIUM ION, GLYCEROL, SYNAPTOTAGMIN I
Authors:Cheng, Y, Sequeira, S.M, Sollner, T.H, Patel, D.J.
Deposit date:2003-09-24
Release date:2004-09-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystallographic Identification of Ca2+ and Sr2+ Coordination Sites in Synaptotagmin I C2B Domain
Protein Sci., 13, 2004
1SUV
DownloadVisualize
BU of 1suv by Molmil
Structure of Human Transferrin Receptor-Transferrin Complex
Descriptor: CARBONATE ION, FE (III) ION, Serotransferrin, ...
Authors:Cheng, Y, Zak, O, Aisen, P, Harrison, S.C, Walz, T.
Deposit date:2004-03-26
Release date:2004-04-13
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Structure of the Human Transferrin Receptor-Transferrin Complex
Cell(Cambridge,Mass.), 116, 2004
1W0H
DownloadVisualize
BU of 1w0h by Molmil
Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP
Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION
Authors:Cheng, Y, Patel, D.
Deposit date:2004-06-04
Release date:2004-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp
J.Mol.Biol., 343, 2004
1TJM
DownloadVisualize
BU of 1tjm by Molmil
Crystallographic Identification of Sr2+ Coordination Site in Synaptotagmin I C2B Domain
Descriptor: GLYCEROL, STRONTIUM ION, Synaptotagmin I
Authors:Cheng, Y, Sequeira, S.M, Malinina, L, Tereshko, V, Sollner, T.H, Patel, D.J.
Deposit date:2004-06-06
Release date:2004-09-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystallographic identification of Ca2+ and Sr2+ coordination sites in synaptotagmin I C2B domain
Protein Sci., 13, 2004
5X8F
DownloadVisualize
BU of 5x8f by Molmil
Ternary complex structure of a double mutant I454RA456K of o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis bound with AMP and its product analogue OSB-NCoA at 1.76 angstrom
Descriptor: 2-succinylbenzoate--CoA ligase, ADENOSINE MONOPHOSPHATE, CALCIUM ION, ...
Authors:Chen, Y, Guo, Z.
Deposit date:2017-03-02
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode
J. Biol. Chem., 292, 2017
5X8G
DownloadVisualize
BU of 5x8g by Molmil
Binary complex structure of a double mutant I454RA456K of o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis bound with its product analogue OSB-NCoA at 1.90 angstrom
Descriptor: 2-succinylbenzoate--CoA ligase, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Chen, Y, Guo, Z.
Deposit date:2017-03-02
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode
J. Biol. Chem., 292, 2017
2MCQ
DownloadVisualize
BU of 2mcq by Molmil
NMR structure of a BolA-like hypothetical protein RP812 from Rickettsia prowazekii, Seattle structural genomics center for infectious disease (SSGCID)
Descriptor: Uncharacterized protein RP812
Authors:Chen, Y, Barnwal, R, Yang, F, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-08-22
Release date:2013-10-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of a BolA-like hypothetical protein RP812 from Rickettsia prowazekii, Seattle structural genomics center for infectious disease (SSGCID)
To be Published
5VAE
DownloadVisualize
BU of 5vae by Molmil
Crystal structure of accessory secretion protein 1 and 3
Descriptor: Accessory Sec system protein Asp1, Accessory Sec system protein Asp3
Authors:Chen, Y, Rapoport, T.A, Jeffrey, P.D.
Deposit date:2017-03-25
Release date:2018-02-21
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (3.106 Å)
Cite:Unraveling the sequence of cytosolic reactions in the export of GspB adhesin fromStreptococcus gordonii.
J. Biol. Chem., 293, 2018
2XEX
DownloadVisualize
BU of 2xex by Molmil
crystal structure of Staphylococcus aureus elongation factor G
Descriptor: CHLORIDE ION, ELONGATION FACTOR G, POTASSIUM ION
Authors:Chen, Y, Koripella, R.K, Sanyal, S, Selmer, M.
Deposit date:2010-05-19
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Staphylococcus Aureus Elongation Factor G - Structure and Analysis of a Target for Fusidic Acid.
FEBS J., 277, 2010
5VAF
DownloadVisualize
BU of 5vaf by Molmil
Crystal structure of accessory secretion protein 1
Descriptor: Accessory Sec system protein Asp1
Authors:Chen, Y, Rapoport, T.A, Jeffrey, P.D.
Deposit date:2017-03-25
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.771 Å)
Cite:Unraveling the sequence of cytosolic reactions in the export of GspB adhesin fromStreptococcus gordonii.
J. Biol. Chem., 293, 2018
3KMD
DownloadVisualize
BU of 3kmd by Molmil
Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer
Descriptor: 5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*TP*AP*GP*GP*CP*AP*TP*GP*CP*C)-3', Cellular tumor antigen p53, ZINC ION
Authors:Chen, Y, Dey, R, Chen, L.
Deposit date:2009-11-10
Release date:2010-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer.
Structure, 18, 2010
1MIC
DownloadVisualize
BU of 1mic by Molmil
GRAMICIDIN A: LEFT-HANDED PARALLEL DOUBLE HELICAL FORM IN METHANOL IN THE PRESENCE OF CACL2, NMR, 20 STRUCTURES
Descriptor: GRAMICIDIN A
Authors:Chen, Y, Tucker, A, Wallace, B.A.
Deposit date:1996-05-22
Release date:1997-02-12
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Solution Structure of a Parallel Left-Handed Double-Helical Gramicidin-A Determined by 2D 1H NMR.
J.Mol.Biol., 264, 1996
3R8D
DownloadVisualize
BU of 3r8d by Molmil
Activation of the Human Nuclear Xenobiotic Receptor PXR by the Reverse Transcriptase-Targeted Anti-HIV Drug PNU-142721
Descriptor: 6-CHLORO-2-(1-FURO[2,3-C]PYRIDIN-5-YL-ETHYLSULFANYL)-PYRIMIDIN-4-YLAMINE, Nuclear receptor subfamily 1 group I member 2
Authors:Cheng, Y, Redinbo, M.R.
Deposit date:2011-03-23
Release date:2011-08-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Activation of the human nuclear xenobiotic receptor PXR by the reverse transcriptase-targeted anti-HIV drug PNU-142721.
Protein Sci., 20, 2011
3R0Q
DownloadVisualize
BU of 3r0q by Molmil
A Uniquely Open Conformation Revealed in the Crystal Structure of Arabidopsis Thaliana Protein Arginine Methyltransferase 10
Descriptor: Probable protein arginine N-methyltransferase 4.2, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Cheng, Y, Redinbo, M.R.
Deposit date:2011-03-08
Release date:2011-10-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of the plant epigenetic protein arginine methyltransferase 10.
J.Mol.Biol., 414, 2011
6JTK
DownloadVisualize
BU of 6jtk by Molmil
Crystal structure of NagZ from Neisseria gonorrhoeae in complex with N-trifluoroacetyl-D-glucosamine
Descriptor: 2,2,2-tris(fluoranyl)-N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]ethanamide, Beta-hexosaminidase
Authors:Chen, Y.
Deposit date:2019-04-11
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of NagZ from Neisseria gonorrhoeae in complex with N-trifluoroacetyl-D-glucosamine
To Be Published
6JTJ
DownloadVisualize
BU of 6jtj by Molmil
Crystal structure of NagZ from Neisseria gonorrhoeae in complex with N-acetylglucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-hexosaminidase
Authors:Chen, Y.
Deposit date:2019-04-11
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Crystal structure of native NagZ from Neisseria gonorrhoeae in complex with N-acetylglucosamine
To Be Published
6JTL
DownloadVisualize
BU of 6jtl by Molmil
Crystal structure of NagZ from Neisseria gonorrhoeae in complex with zinc ion
Descriptor: Beta-hexosaminidase, ZINC ION
Authors:Chen, Y.
Deposit date:2019-04-11
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NagZ from Neisseria gonorrhoeae in complex with zinc ion
To Be Published
6JTI
DownloadVisualize
BU of 6jti by Molmil
Crystal structure of native NagZ from Neisseria gonorrhoeae
Descriptor: Beta-hexosaminidase
Authors:Chen, Y.
Deposit date:2019-04-11
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of native NagZ from Neisseria gonorrhoeae
To Be Published
6KF7
DownloadVisualize
BU of 6kf7 by Molmil
Microbial Hormone-sensitive lipase E53 mutant S285G
Descriptor: (4-nitrophenyl) hexanoate, 1,2-ETHANEDIOL, GLYCEROL, ...
Authors:Xiaochen, Y, Zhengyang, L, Xuewei, X, Jixi, L.
Deposit date:2019-07-06
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Microbial Hormone-sensitive lipase E53 mutant S285G
To Be Published
6KF1
DownloadVisualize
BU of 6kf1 by Molmil
Microbial Hormone-sensitive lipase- E53 mutant S162A
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HEXANOIC ACID, ...
Authors:Xiaochen, Y, Zhengyang, L, Xuewei, X, Jixi, L.
Deposit date:2019-07-05
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Functional and Structural Insights into Environmental Adaptation of a Novel Hormone-sensitive Lipase, E53, Obtained from Erythrobacter longus
To Be Published
1JE9
DownloadVisualize
BU of 1je9 by Molmil
NMR SOLUTION STRUCTURE OF NT2
Descriptor: SHORT NEUROTOXIN II
Authors:Cheng, Y, Wang, W, Wang, J.
Deposit date:2001-06-16
Release date:2001-07-04
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structure-function relationship of three neurotoxins from the venom of Naja kaouthia: a comparison between the NMR-derived structure of NT2 with its homologues, NT1 and NT3
BIOCHIM.BIOPHYS.ACTA, 1594, 2002
7E34
DownloadVisualize
BU of 7e34 by Molmil
Crystal structure of SUN1-Speedy A-CDK2
Descriptor: Cyclin-dependent kinase 2, GLYCEROL, SUN domain-containing protein 1, ...
Authors:Chen, Y, Huang, C, Wu, J, Lei, M.
Deposit date:2021-02-08
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:The SUN1-SPDYA interaction plays an essential role in meiosis prophase I.
Nat Commun, 12, 2021
7FJD
DownloadVisualize
BU of 7fjd by Molmil
Cryo-EM structure of a membrane protein(WT)
Descriptor: CHOLESTEROL, T cell receptor alpha variable 12-3,Possible J 11 gene segment,T cell receptor alpha chain constant, T cell receptor beta variable 6-5,M1-specific T cell receptor beta chain,T cell receptor beta constant 2, ...
Authors:Chen, Y, Zhu, Y, Gao, W, Zhang, A, Guo, C, Huang, Z.
Deposit date:2021-08-03
Release date:2022-07-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cholesterol inhibits TCR signaling by directly restricting TCR-CD3 core tunnel motility.
Mol.Cell, 82, 2022

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon