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8I19
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BU of 8i19 by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.0
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I18
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BU of 8i18 by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 7.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1H
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BU of 8i1h by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1J
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BU of 8i1j by Molmil
Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 9.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I8T
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BU of 8i8t by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dAMP and Mn2+
Descriptor: 2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE, 7,8-dihydro-8-oxoguanine triphosphatase, MANGANESE (II) ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-02-05
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1F
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BU of 8i1f by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.6
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I8S
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BU of 8i8s by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGMP and Mn2+
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-02-05
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
1Y37
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BU of 1y37 by Molmil
Structure of Fluoroacetate Dehalogenase from Burkholderia sp. FA1
Descriptor: Fluoroacetate Dehalogenase, MAGNESIUM ION
Authors:Omi, R.
Deposit date:2004-11-23
Release date:2006-02-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Fluoroacetate Dehalogenase FA1
To be Published
5Y6Q
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BU of 5y6q by Molmil
Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400
Descriptor: Aldehyde oxidase large subunit, Aldehyde oxidase medium subunit, Aldehyde oxidase small subunit, ...
Authors:Mikami, B, Uchida, H.
Deposit date:2017-08-13
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400.
J. Biochem., 163, 2018
1V7C
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BU of 1v7c by Molmil
Crystal structure of threonine synthase from thermus thermophilus hb8 in complex with a substrate analogue
Descriptor: (2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID, THREONINE SYNTHASE
Authors:Omi, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-16
Release date:2003-12-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of threonine synthase from Thermus thermophilus HB8: conformational change, substrate recognition, and mechanism.
J.Biol.Chem., 278, 2003
1VB3
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BU of 1vb3 by Molmil
Crystal Structure of Threonine Synthase from Escherichia coli
Descriptor: 2-OXO-5-PHOSPHONOPENTANOIC ACID, SULFATE ION, Threonine synthase
Authors:Omi, R.
Deposit date:2004-02-21
Release date:2005-06-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Threonine Synthase from Escherichia coli
To be Published
1VE4
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BU of 1ve4 by Molmil
ATP-Phosphoribosyltransferase(hisG) from Thermus thermophilus HB8
Descriptor: ATP phosphoribosyltransferase, GLYCEROL, SULFATE ION
Authors:Omi, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-27
Release date:2005-06-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of ATP-phosphoribosyltransferase(HisG)
To be Published
2YXO
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BU of 2yxo by Molmil
Histidinol Phosphate Phosphatase complexed with Sulfate
Descriptor: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
Authors:Omi, R.
Deposit date:2007-04-26
Release date:2007-11-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
2YZ5
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BU of 2yz5 by Molmil
Histidinol Phosphate Phosphatase complexed with Phosphate
Descriptor: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
Authors:Omi, R.
Deposit date:2007-05-03
Release date:2007-11-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
2Z4G
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BU of 2z4g by Molmil
Histidinol Phosphate Phosphatase from Thermus thermophilus HB8
Descriptor: FE (III) ION, GLYCEROL, Histidinol phosphatase, ...
Authors:Omi, R.
Deposit date:2007-06-17
Release date:2007-11-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Monofunctional Histidinol Phosphate Phosphatase from Thermus thermophilus HB8.
Biochemistry, 46, 2007
5Y9L
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BU of 5y9l by Molmil
Human kallikrein 7 in complex with 1,3,6-trisubstituted 1,4-diazepane-7-one
Descriptor: 3-[2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid, CHLORIDE ION, Kallikrein-7
Authors:Sugawara, H.
Deposit date:2017-08-25
Release date:2017-11-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors
Bioorg. Med. Chem. Lett., 27, 2017
5YJK
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BU of 5yjk by Molmil
Human kallikrein 7 in complex with 1,4-diazepane-7-one 1-acetamide derivative
Descriptor: (R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide, CHLORIDE ION, Kallikrein-7
Authors:Sugawara, H.
Deposit date:2017-10-11
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors
Bioorg. Med. Chem. Lett., 27, 2017
3A9Z
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BU of 3a9z by Molmil
Crystal structure of ras selenocysteine lyase in complex with selenopropionate
Descriptor: 3-selanylpropanoic acid, PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Omi, R, Hirotsu, K.
Deposit date:2009-11-09
Release date:2010-03-16
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
3A9Y
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BU of 3a9y by Molmil
Crystal structure of rat selenocysteine lyase in complex with L-cysteine
Descriptor: CYSTEINE, GLYCEROL, PHOSPHATE ION, ...
Authors:Omi, R, Hirotsu, K.
Deposit date:2009-11-09
Release date:2010-03-16
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
3A9X
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BU of 3a9x by Molmil
Crystal structure of rat selenocysteine lyase
Descriptor: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, Selenocysteine lyase
Authors:Omi, R, Hirotsu, K.
Deposit date:2009-11-08
Release date:2010-03-16
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.
J.Biol.Chem., 285, 2010
6M9L
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BU of 6m9l by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping - compound 10
Descriptor: 3-benzyl-6-[(2,4-difluorophenyl)amino]-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one, Mitogen-activated protein kinase 14
Authors:Lane, W, Okada, K.
Deposit date:2018-08-23
Release date:2019-04-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
6M95
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BU of 6m95 by Molmil
Structure-based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridine-2-one based p38 MAP Kinase Inhibitors by scaffold hopping: compound 1
Descriptor: (4-benzylpiperidin-1-yl)[2-methoxy-4-(methylsulfanyl)phenyl]methanone, Mitogen-activated protein kinase 14
Authors:Lane, W, Okada, K.
Deposit date:2018-08-22
Release date:2019-04-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 1.
Chemmedchem, 14, 2019
6OHD
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BU of 6ohd by Molmil
P38 in complex with T-3220137
Descriptor: 3-(3-tert-butyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-6-yl)-4-methyl-N-(1,2-oxazol-3-yl)benzamide, Mitogen-activated protein kinase 14
Authors:Lane, W, Saikatendu, K.
Deposit date:2019-04-05
Release date:2019-11-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Design, Synthesis, and Biological Evaluation of Imidazo[4,5-b]Pyridin-2-one-Based p38 MAP Kinase Inhibitors: Part 2.
Chemmedchem, 14, 2019
2BZ7
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BU of 2bz7 by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Hulsker, R, Thomassen, E.A.J, Ubbink, M.
Deposit date:2005-08-12
Release date:2006-11-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007
2BZC
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BU of 2bzc by Molmil
Oxidized and reduced structures of a mutant Plastocyanin of fern
Descriptor: COPPER (I) ION, PLASTOCYANIN
Authors:Hulsker, R, Thomassen, E.A.J, Ubbink, M.
Deposit date:2005-08-15
Release date:2006-11-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Protonation of a Histidine Copper Ligand in Fern Plastocyanin.
J.Am.Chem.Soc., 129, 2007

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