1WMR
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![BU of 1wmr by Molmil](/molmil-images/mine/1wmr) | Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase | Authors: | Mizuno, M, Tonozuka, T, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2004-07-15 | Release date: | 2005-07-19 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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1WZM
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![BU of 1wzm by Molmil](/molmil-images/mine/1wzm) | Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469K | Descriptor: | Alpha-amylase II, CALCIUM ION | Authors: | Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-06 | Release date: | 2005-03-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II) To be Published
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1X0C
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![BU of 1x0c by Molmil](/molmil-images/mine/1x0c) | Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase | Authors: | Mizuno, M, Tonozuka, T, Yamamura, A, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2005-03-17 | Release date: | 2006-06-13 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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3W7T
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![BU of 3w7t by Molmil](/molmil-images/mine/3w7t) | Escherichia coli K12 YgjK complexed with mannose | Descriptor: | CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ... | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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1JF6
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![BU of 1jf6 by Molmil](/molmil-images/mine/1jf6) | Crystal structure of thermoactinomyces vulgaris r-47 alpha-amylase mutant F286Y | Descriptor: | ALPHA AMYLASE II, CALCIUM ION | Authors: | Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2001-06-20 | Release date: | 2002-05-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001
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3W7U
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![BU of 3w7u by Molmil](/molmil-images/mine/3w7u) | Escherichia coli K12 YgjK complexed with galactose | Descriptor: | CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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3W7S
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![BU of 3w7s by Molmil](/molmil-images/mine/3w7s) | Escherichia coli K12 YgjK complexed with glucose | Descriptor: | CALCIUM ION, Uncharacterized protein YgjK, alpha-D-glucopyranose | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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1JF5
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![BU of 1jf5 by Molmil](/molmil-images/mine/1jf5) | CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2 MUTANT F286A | Descriptor: | ALPHA AMYLASE II, CALCIUM ION | Authors: | Ohtaki, A, Kondo, S, Shimura, Y, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2001-06-20 | Release date: | 2002-05-22 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Role of Phe286 in the recognition mechanism of cyclomaltooligosaccharides (cyclodextrins) by Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structures of the mutant TVAIIs, F286A and F286Y, and kinetic analyses of the Phe286-replaced mutant TVAIIs CARBOHYDR.RES., 334, 2001
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1JI2
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![BU of 1ji2 by Molmil](/molmil-images/mine/1ji2) | Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2 | Descriptor: | ALPHA-AMYLASE II, CALCIUM ION | Authors: | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | Deposit date: | 2001-06-28 | Release date: | 2002-06-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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1JL8
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![BU of 1jl8 by Molmil](/molmil-images/mine/1jl8) | Complex of alpha-amylase II (TVA II) from Thermoactinomyces vulgaris R-47 with beta-cyclodextrin based on a co-crystallization with methyl beta-cyclodextrin | Descriptor: | ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose) | Authors: | Yokota, T, Tonozuka, T, Shimura, Y, Ichikawa, K, Kamitori, S, Sakano, Y. | Deposit date: | 2001-07-16 | Release date: | 2001-08-01 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Structures of Thermoactinomyces vulgaris R-47 alpha-amylase II complexed with substrate analogues. Biosci.Biotechnol.Biochem., 65, 2001
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2D0H
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![BU of 2d0h by Molmil](/molmil-images/mine/2d0h) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D0F
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![BU of 2d0f by Molmil](/molmil-images/mine/2d0f) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2ZYO
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![BU of 2zyo by Molmil](/molmil-images/mine/2zyo) | Crystal structure of cyclo/maltodextrin-binding protein complexed with maltotetraose | Descriptor: | alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, solute-binding protein | Authors: | Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T. | Deposit date: | 2009-01-27 | Release date: | 2009-03-31 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J., 276, 2009
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2ZYM
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![BU of 2zym by Molmil](/molmil-images/mine/2zym) | Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin | Descriptor: | Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein | Authors: | Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T. | Deposit date: | 2009-01-27 | Release date: | 2009-03-31 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J., 276, 2009
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2ZYN
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![BU of 2zyn by Molmil](/molmil-images/mine/2zyn) | Crystal structure of cyclo/maltodextrin-binding protein complexed with beta-cyclodextrin | Descriptor: | Cycloheptakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein | Authors: | Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T. | Deposit date: | 2009-01-27 | Release date: | 2009-03-31 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J., 276, 2009
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3A6O
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![BU of 3a6o by Molmil](/molmil-images/mine/3a6o) | Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex | Descriptor: | ACARBOSE DERIVED PENTASACCHARIDE, CALCIUM ION, Neopullulanase 2 | Authors: | Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2009-09-07 | Release date: | 2009-09-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM., 279, 2004
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2D2O
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![BU of 2d2o by Molmil](/molmil-images/mine/2d2o) | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft | Descriptor: | CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-09-13 | Release date: | 2006-08-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft Carbohydr.Res., 341, 2006
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2D0G
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![BU of 2d0g by Molmil](/molmil-images/mine/2d0g) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2FL1
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![BU of 2fl1 by Molmil](/molmil-images/mine/2fl1) | Crystal structure of red fluorescent protein from Zoanthus, zRFP574, at 2.4A resolution | Descriptor: | Red fluorescent protein zoanRFP, SULFATE ION | Authors: | Pletnev, V, Pletneva, N, Martynov, V, Tikhonova, T, Popov, B, Pletnev, S. | Deposit date: | 2006-01-05 | Release date: | 2007-01-09 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of a red fluorescent protein from Zoanthus, zRFP574, reveals a novel chromophore Acta Crystallogr.,Sect.D, 62, 2006
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1IZJ
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![BU of 1izj by Molmil](/molmil-images/mine/1izj) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme f313a | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1IZK
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![BU of 1izk by Molmil](/molmil-images/mine/1izk) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1JI1
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![BU of 1ji1 by Molmil](/molmil-images/mine/1ji1) | Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 | Descriptor: | ALPHA-AMYLASE I, CALCIUM ION | Authors: | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | Deposit date: | 2001-06-28 | Release date: | 2002-06-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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1G1Y
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![BU of 1g1y by Molmil](/molmil-images/mine/1g1y) | CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX | Descriptor: | ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose) | Authors: | Kondo, S, Ohtaki, A, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2000-10-16 | Release date: | 2001-03-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Studies on the hydrolyzing mechanism for cyclodextrins of Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structure of the mutant E354A complexed with beta-cyclodextrin, and kinetic analyses on cyclodextrins. J.Biochem.(Tokyo), 129, 2001
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7QSI
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![BU of 7qsi by Molmil](/molmil-images/mine/7qsi) | human Carbonic Anhydrase II in complex with indoline-1-sulfonamide | Descriptor: | 2,3-dihydroindole-1-sulfonamide, Carbonic anhydrase 2, GLYCEROL, ... | Authors: | Angeli, A, Ferraroni, M. | Deposit date: | 2022-01-13 | Release date: | 2023-01-25 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.304 Å) | Cite: | Diversely substituted sulfamides for fragment-based drug discovery of carbonic anhydrase inhibitors: synthesis and inhibitory profile. J Enzyme Inhib Med Chem, 37, 2022
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3SXQ
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![BU of 3sxq by Molmil](/molmil-images/mine/3sxq) | Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio paradoxus | Descriptor: | CALCIUM ION, CHLORIDE ION, COBALT (II) ION, ... | Authors: | Polyakov, K.M, Trofimov, A.A, Tikhonova, T.V, Tikhonov, A.V, Boyko, K.M, Popov, V.O. | Deposit date: | 2011-07-15 | Release date: | 2012-09-26 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Comparative structural and functional analysis of two octaheme nitrite reductases from closely related Thioalkalivibrio species. Febs J., 279, 2012
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