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1JVU
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BU of 1jvu by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)
Descriptor: CYTIDINE-2'-MONOPHOSPHATE, RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
9EX1
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BU of 9ex1 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure B)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.785 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EX2
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BU of 9ex2 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.172 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EX0
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BU of 9ex0 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure A)
Descriptor: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
Authors:Tito, G, Merlino, A, Ferraro, G.
Deposit date:2024-04-05
Release date:2024-06-26
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
1EOW
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BU of 1eow by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (NON-PRODUCTIVE BINDING)
Descriptor: RIBONUCLEASE PANCREATIC, SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2000-03-24
Release date:2000-11-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Productive and nonproductive binding to ribonuclease A: X-ray structure of two complexes with uridylyl(2',5')guanosine.
Protein Sci., 9, 2000
1EOS
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BU of 1eos by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (PRODUCTIVE BINDING)
Descriptor: RIBONUCLEASE PANCREATIC, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2000-03-24
Release date:2000-08-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Productive and nonproductive binding to ribonuclease A: X-ray structure of two complexes with uridylyl(2',5')guanosine.
Protein Sci., 9, 2000
6HJT
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BU of 6hjt by Molmil
The X-ray structure of the horse spleen ferritin nanocage containing Pt, obtained upon encapsulation of a Pt(II) terpyridine compound within the protein cage
Descriptor: CADMIUM ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Pica, A, Ferraro, G, Merlino, A.
Deposit date:2018-09-04
Release date:2018-12-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Preparation, structure, cytotoxicity and mechanism of action of ferritin-Pt(II) terpyridine compound nanocomposites.
Nanomedicine (Lond), 13, 2018
6HJU
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BU of 6hju by Molmil
The X-ray structure of the horse spleen ferritin nanocage containing Pt, obtained upon encapsulation of a Pt(II) terpyridine compound within the protein cage
Descriptor: CADMIUM ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Pica, A, Ferraro, G, Merlino, A.
Deposit date:2018-09-04
Release date:2018-12-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Preparation, structure, cytotoxicity and mechanism of action of ferritin-Pt(II) terpyridine compound nanocomposites.
Nanomedicine (Lond), 13, 2018
4RTE
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BU of 4rte by Molmil
The X-ray structure of bovine pancreatic ribonuclease incubated in the presence of an excess of cisplatin (1:10 ratio)
Descriptor: CHLORIDE ION, Cisplatin, Ribonuclease pancreatic
Authors:Russo Krauss, I, Merlino, A.
Deposit date:2014-11-14
Release date:2015-03-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Platinated oligomers of bovine pancreatic ribonuclease: Structure and stability.
J.Inorg.Biochem., 146, 2015
8PTE
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BU of 8pte by Molmil
Polyoxidovanadate interaction with proteins: crystal structure of lysozyme bound to octadecavanadate ion (structure B)
Descriptor: Lysozyme C, NITRATE ION, Polyoxidovanadate complex, ...
Authors:Tito, G, Ferraro, G, Merlino, A.
Deposit date:2023-07-14
Release date:2024-01-10
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Stabilization and Binding of [V 4 O 12 ] 4- and Unprecedented [V 20 O 54 (NO 3 )] n- to Lysozyme upon Loss of Ligands and Oxidation of the Potential Drug V IV O(acetylacetonato) 2.
Angew.Chem.Int.Ed.Engl., 62, 2023
11BG
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BU of 11bg by Molmil
A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE
Descriptor: PROTEIN (BOVINE SEMINAL RIBONUCLEASE), SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Adinolfi, S, Sica, F, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:1999-03-11
Release date:1999-11-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease.
J.Mol.Biol., 293, 1999
4DII
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BU of 4dii by Molmil
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2012-01-31
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.
Nucleic Acids Res., 40, 2012
7NPM
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BU of 7npm by Molmil
X-ray structure of the adduct formed upon reaction of oxaliplatin with human angiogenin
Descriptor: Angiogenin, D(-)-TARTARIC ACID, PLATINUM (II) ION
Authors:Ferraro, G, Merlino, A.
Deposit date:2021-02-27
Release date:2022-03-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Oxaliplatin inhibits angiogenin proliferative and cell migration effects in prostate cancer cells.
J.Inorg.Biochem., 226, 2022
2AA1
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BU of 2aa1 by Molmil
Crystal structure of the cathodic hemoglobin isolated from the Antarctic fish Trematomus Newnesi
Descriptor: Hemoglobin alpha-1 chain, Hemoglobin beta-C chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mazzarella, L, Bonomi, G, Lubrano, M.C, Merlino, A, Riccio, A, Vergara, A, Vitagliano, L, Verde, C, Di Prisco, G.
Deposit date:2005-07-13
Release date:2005-08-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Minimal structural requirements for root effect: crystal structure of the cathodic hemoglobin isolated from the antarctic fish Trematomus newnesi
Proteins, 62, 2006
4YIO
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BU of 4yio by Molmil
X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus thermophilus
Descriptor: FE (III) ION, GLYCEROL, SULFATE ION, ...
Authors:Russo Krauss, I, Merlino, A, Pica, A, Sica, F.
Deposit date:2015-03-02
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fine tuning of metal-specific activity in the Mn-like group of cambialistic superoxide dismutases
Rsc Adv, 5, 2015
7P8R
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BU of 7p8r by Molmil
X-ray structure of the adduct of a vanadium picolinate complex with RNase A at pH 5.1
Descriptor: Ribonuclease pancreatic, SULFATE ION, hydroxy(oxo)bis(pyridine-2-carboxylato-kappa~2~N,O)vanadium(3+)
Authors:Ferraro, G, Merlino, A.
Deposit date:2021-07-23
Release date:2021-12-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the V IV O-Picolinato Complex with RNase A.
Inorg.Chem., 60, 2021
4YIP
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BU of 4yip by Molmil
X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus mutans
Descriptor: FE (III) ION, Superoxide dismutase [Mn/Fe]
Authors:Russo Krauss, I, Merlino, A, Pica, A, Sica, F.
Deposit date:2015-03-02
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Fine tuning of metal-specific activity in the Mn-like group of cambialistic superoxide dismutases
Rsc Adv, 5, 2015
3LJE
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BU of 3lje by Molmil
The X-ray structure of zebrafish RNase5
Descriptor: ACETATE ION, SULFATE ION, Zebrafish RNase5
Authors:Russo Krauss, I, Merlino, A, Coscia, F, Mazzarella, L, Sica, F.
Deposit date:2010-01-26
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
3LN8
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BU of 3ln8 by Molmil
The X-ray structure of Zf-RNase-1 from a new crystal form at pH 7.3
Descriptor: HYDROLASE, SULFATE ION
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2010-02-02
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
3LJD
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BU of 3ljd by Molmil
The X-ray structure of zebrafish RNase1 from a new crystal form at pH 4.5
Descriptor: ACETATE ION, SULFATE ION, Zebrafish RNase1
Authors:Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F.
Deposit date:2010-01-26
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish.
Biochem.J., 433, 2010
5JMG
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BU of 5jmg by Molmil
X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)
Descriptor: CARBON MONOXIDE, CHLORIDE ION, IRIDIUM ION, ...
Authors:Caterino, M, Petruk, A.A, Vergara, A, Ferraro, G, Merlino, A.
Deposit date:2016-04-29
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mapping the protein-binding sites for iridium(iii)-based CO-releasing molecules.
Dalton Trans, 45, 2016
5JML
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BU of 5jml by Molmil
X-ray structure of the complex between bovine pancreatic ribonuclease and penthachlorocarbonyliridate(III) (2 months of soaking)
Descriptor: CARBON MONOXIDE, CHLORIDE ION, IRIDIUM ION, ...
Authors:Caterino, M, Petruk, A.A, Vergara, A, Ferraro, G, Merlino, A.
Deposit date:2016-04-29
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Mapping the protein-binding sites for iridium(iii)-based CO-releasing molecules.
Dalton Trans, 45, 2016
5LC7
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BU of 5lc7 by Molmil
Crystal structure of a single chain monellin mutant: E23Q/Q28K/C41S/Y65R-MNEI
Descriptor: Monellin chain B,Monellin chain A
Authors:Pica, A, Merlino, A.
Deposit date:2016-06-19
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Sweeter and stronger: enhancing sweetness and stability of the single chain monellin MNEI through molecular design.
Sci Rep, 6, 2016
5LFG
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BU of 5lfg by Molmil
X-ray structure of a new fully ligated carbomonoxy form of Trematomus newnesi hemoglobin (Hb1TnCO).
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha-1, Hemoglobin subunit beta-1/2, ...
Authors:Vitagliano, L, Mazzarella, L, Merlino, A, Vergara, A.
Deposit date:2016-07-01
Release date:2017-08-09
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Fine Sampling of the RT Quaternary-Structure Transition of a Tetrameric Hemoglobin.
Chemistry, 23, 2017
4Y23
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BU of 4y23 by Molmil
Crystal structure of T399A precursor mutant protein of gamma-glutamyl transpeptidase from Bacillus licheniformis
Descriptor: Gamma glutamyl transpeptidase,Gamma-glutamyltranspeptidase, SODIUM ION
Authors:Pica, A, Merlino, A.
Deposit date:2015-02-09
Release date:2015-11-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The maturation mechanism of gamma-glutamyl transpeptidases: Insights from the crystal structure of a precursor mimic of the enzyme from Bacillus licheniformis and from site-directed mutagenesis studies.
Biochim.Biophys.Acta, 1864, 2015

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PDB entries from 2024-08-28

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