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5WXC
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BU of 5wxc by Molmil
Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 2)
Descriptor: Beta-2-microglobulin, H7-25-F, HLA class I histocompatibility antigen, ...
Authors:Zhao, M, Liu, K, Chai, Y, Qi, J, Liu, J, Gao, G.F.
Deposit date:2017-01-07
Release date:2018-01-17
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:Heterosubtypic Protections against Human-Infecting Avian Influenza Viruses Correlate to Biased Cross-T-Cell Responses.
Mbio, 9, 2018
5WXD
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BU of 5wxd by Molmil
Crystal Structure of HLA-A*2402 in complex with avian influenza A(H7N9) virus-derived peptide H7-25 (data set 1)
Descriptor: Beta-2-microglobulin, H7-25, HLA class I histocompatibility antigen, ...
Authors:Zhao, M, Liu, K, Chai, Y, Qi, J, Liu, J, Gao, G.F.
Deposit date:2017-01-07
Release date:2018-01-17
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (3.295 Å)
Cite:Heterosubtypic Protections against Human-Infecting Avian Influenza Viruses Correlate to Biased Cross-T-Cell Responses.
Mbio, 9, 2018
8W7M
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BU of 8w7m by Molmil
Yeast replisome in state V
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (71-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-30
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8W7S
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BU of 8w7s by Molmil
Yeast replisome in state IV
Descriptor: Cell division control protein 45, DNA (71-mer), DNA polymerase alpha-binding protein, ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D.
Deposit date:2023-08-31
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (7.39 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8WSQ
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BU of 8wsq by Molmil
A protective human antibody against respiratory syncytial virus by targeting a prefusion epitope across sites IV and V of the viral fusion glycoprotein.
Descriptor: Fusion glycoprotein F0, RV11-H scFv, RV11-L scFv
Authors:Xu, S.Y, Chai, Y.
Deposit date:2023-10-17
Release date:2023-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A protective human antibody against respiratory syncytial virus by targeting a prefusion epitope across sites IV and V of the viral fusion glycoprotein.
To Be Published
6A3V
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BU of 6a3v by Molmil
Complex structure of human 4-1BB and 4-1BBL
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor ligand superfamily member 9, Tumor necrosis factor receptor superfamily member 9
Authors:Li, Y, Zhang, C, Chai, Y, Qi, J, Tien, P, Gao, S, Gao, G.F.
Deposit date:2018-06-17
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.391 Å)
Cite:Limited Cross-Linking of 4-1BB by 4-1BB Ligand and the Agonist Monoclonal Antibody Utomilumab.
Cell Rep, 25, 2018
8GRY
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BU of 8gry by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with rat ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S1, ...
Authors:Zhao, Z.N, Xie, Y.F, Chai, Y, Qi, J.X, Gao, G.F.
Deposit date:2022-09-03
Release date:2023-07-19
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Structural basis for receptor binding and broader interspecies receptor recognition of currently circulating Omicron sub-variants.
Nat Commun, 14, 2023
6A3W
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BU of 6a3w by Molmil
Complex structure of 4-1BB and utomilumab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Tumor necrosis factor receptor superfamily member 9, utomilumab VH, ...
Authors:Li, Y, Tan, S, Zhang, C, Chai, Y, Qi, J, Tien, P, Gao, S, Gao, G.F.
Deposit date:2018-06-17
Release date:2018-10-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Limited Cross-Linking of 4-1BB by 4-1BB Ligand and the Agonist Monoclonal Antibody Utomilumab.
Cell Rep, 25, 2018
8KG8
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BU of 8kg8 by Molmil
Yeast replisome in state II
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG9
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BU of 8kg9 by Molmil
Yeast replisome in state III
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (4.52 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KG6
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BU of 8kg6 by Molmil
Yeast replisome in state I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
Authors:Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z.
Deposit date:2023-08-17
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Synergism between CMG helicase and leading strand DNA polymerase at replication fork.
Nat Commun, 14, 2023
8KA8
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BU of 8ka8 by Molmil
Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Niu, S, Zhao, Z.N, Chai, Y, Gao, G.F.
Deposit date:2023-08-02
Release date:2024-01-31
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structural basis and analysis of hamster ACE2 binding to different SARS-CoV-2 spike RBDs.
J.Virol., 98, 2024
8KC2
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BU of 8kc2 by Molmil
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Niu, S, Zhao, Z.N, Chai, Y, Gao, G.F.
Deposit date:2023-08-05
Release date:2024-01-31
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis and analysis of hamster ACE2 binding to different SARS-CoV-2 spike RBDs.
J.Virol., 98, 2024
7V3U
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BU of 7v3u by Molmil
Cryo-EM structure of MCM double hexamer with structured Mcm4-NSD
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, ...
Authors:Cheng, J, Li, N, Huo, Y, Dang, S, Tye, B, Gao, N, Zhai, Y.
Deposit date:2021-08-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural Insight into the MCM double hexamer activation by Dbf4-Cdc7 kinase.
Nat Commun, 13, 2022
7V3V
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BU of 7v3v by Molmil
Cryo-EM structure of MCM double hexamer bound with DDK in State I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 7, DDK kinase regulatory subunit DBF4, ...
Authors:Cheng, J, Li, N, Huo, Y, Dang, S, Tye, B, Gao, N, Zhai, Y.
Deposit date:2021-08-11
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural Insight into the MCM double hexamer activation by Dbf4-Cdc7 kinase.
Nat Commun, 13, 2022
8GPN
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BU of 8gpn by Molmil
Human menin in complex with H3K79Me2 nucleosome
Descriptor: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ...
Authors:Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D.
Deposit date:2022-08-26
Release date:2023-02-15
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Menin "reads" H3K79me2 mark in a nucleosomal context.
Science, 379, 2023
8HIT
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BU of 8hit by Molmil
Crystal structure of anti-CTLA-4 humanized IgG1 MAb--JS007 in complex with human CTLA-4
Descriptor: Cytotoxic T-lymphocyte protein 4, JS007-VH, JS007-VL
Authors:Tan, S, Shi, Y, Wang, Q, Gao, G.F, Guan, J, Chai, Y, Qi, J.
Deposit date:2022-11-21
Release date:2023-02-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Characterization of the high-affinity anti-CTLA-4 monoclonal antibody JS007 for immune checkpoint therapy of cancer.
Mabs, 15, 2023
8GVB
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BU of 8gvb by Molmil
The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 peptide
Descriptor: 8-mer peptide from Protein Nef, Beta-2-microglobulin, MHC class I antigen, ...
Authors:Gao, G.F, Shi, Y, Ma, K, Chai, Y, Guan, J, Qi, J, Tan, S, Dong, T, Iwamoto, A, Kawana-Tachikawa, A.
Deposit date:2022-09-14
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular Basis for the Recognition of HIV Nef138-8 Epitope by a Pair of Human Public T Cell Receptors.
J Immunol., 209, 2022
8GVG
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BU of 8gvg by Molmil
The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 (2F) peptide
Descriptor: Beta-2-microglobulin, MHC class I antigen, TD08 TCR alpha chain, ...
Authors:Gao, G.F, Shi, Y, Ma, K, Chai, Y, Guan, J, Qi, J, Tan, S, Dong, T, Iwamoto, A, Kawana-Tachikawa, A.
Deposit date:2022-09-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.37 Å)
Cite:Molecular Basis for the Recognition of HIV Nef138-8 Epitope by a Pair of Human Public T Cell Receptors.
J Immunol., 209, 2022
8GVI
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BU of 8gvi by Molmil
The complex between H25-11 TCR and HLA-A24 bound to HIV-1 Nef138-8 peptide
Descriptor: 8-mer peptide from Protein Nef, Beta-2-microglobulin, H25-11 TCR alpha chain, ...
Authors:Gao, G.F, Shi, Y, Tan, S, Ma, K, Chai, Y, Qi, J, Kawana-Tachikawa, A, Iwamoto, A, Dong, T, Guan, J.
Deposit date:2022-09-15
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular Basis for the Recognition of HIV Nef138-8 Epitope by a Pair of Human Public T Cell Receptors.
J Immunol., 209, 2022
8GPX
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BU of 8gpx by Molmil
YFV_E_YD73Fab_postfusion
Descriptor: Envelope protein, YD73Fab_H, YD73Fab_K
Authors:Li, Y, Wu, L, Chai, Y, Qi, J, Yan, J, Gao, G.F.
Deposit date:2022-08-27
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:A neutralizing-protective supersite of human monoclonal antibodies for yellow fever virus.
Innovation (N Y), 3, 2022
5ZR1
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BU of 5zr1 by Molmil
Saccharomyces Cerevisiae Origin Recognition Complex Bound to a 72-bp Origin DNA containing ACS and B1 element
Descriptor: 72bp-oring DNA, ACS305, A-rich, ...
Authors:Li, N, Lam, W.H, Zhai, Y, Cheng, J, Cheng, E, Zhao, Y, Gao, N, Tye, B.K.
Deposit date:2018-04-21
Release date:2018-07-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the origin recognition complex bound to DNA replication origin.
Nature, 559, 2018
5WT9
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BU of 5wt9 by Molmil
Complex structure of PD-1 and nivolumab-Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of Nivolumab, Light Chain of Nivolumab, ...
Authors:Tan, S, Zhang, H, Chai, Y, Song, H, Tong, Z, Wang, Q, Qi, J, Wong, G, Zhu, X, Liu, W.J, Gao, S, Wang, Z, Shi, Y, Yang, F, Gao, G.F, Yan, J.
Deposit date:2016-12-10
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:An unexpected N-terminal loop in PD-1 dominates binding by nivolumab.
Nat Commun, 8, 2017
8I5D
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BU of 8i5d by Molmil
Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Descriptor: Beta-2-microglobulin, MHC class I antigen (Fragment), TCR alpha chain, ...
Authors:Lu, D, Chen, Y, Jiang, M, Tan, S.G, Chai, Y, Gao, G.F.
Deposit date:2023-01-25
Release date:2023-08-23
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of a TCR in complex with HLA-A*11:01 bound to KRAS peptide (VVGAVGVGK)
Nat Commun, 2023
6A7W
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BU of 6a7w by Molmil
Structure of a catalytic domain of the colistin resistance enzyme
Descriptor: Putative integral membrane protein, ZINC ION
Authors:Wang, X.D, Chai, Y, Qi, J.X, Gao, G.F.
Deposit date:2018-07-04
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.988 Å)
Cite:Structural and functional insights into MCR-2 mediated colistin resistance.
Sci China Life Sci, 61, 2018

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PDB entries from 2024-06-19

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