Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7V5J
DownloadVisualize
BU of 7v5j by Molmil
MERS S ectodomain trimer in complex with neutralizing antibody 0722(state 2)
Descriptor: 0722 H, 0722 L, Spike glycoprotein
Authors:Wang, X, Zhao, J, Wang, Z, Zeng, J, Zhang, S, Wang, Y.
Deposit date:2021-08-17
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:MERS S ectodomain trimer in complex with neutralizing antibody 0722(state 2)
to be published
7V6N
DownloadVisualize
BU of 7v6n by Molmil
MERS S ectodomain trimer in complex with neutralizing antibody 111 state1
Descriptor: 111 H, 111 L, Spike glycoprotein
Authors:Wang, X, Zhao, J, Wang, Z, Zeng, J, Zhang, S, Wang, Y.
Deposit date:2021-08-20
Release date:2022-09-14
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:MERS S ectodomain trimer in complex with neutralizing antibody 111 state1
to be published
7V6O
DownloadVisualize
BU of 7v6o by Molmil
MERS S ectodomain trimer in complex with neutralizing antibody 111 (state 2)
Descriptor: 111 H, 111 L, Spike glycoprotein
Authors:Wang, X, Zhao, J, Wang, Z, Zeng, J, Zhang, S, Wang, Y.
Deposit date:2021-08-20
Release date:2022-09-28
Method:ELECTRON MICROSCOPY (4.56 Å)
Cite:MERS S ectodomain trimer in complex with neutralizing antibody 111 (state 2)
to be published
7XMK
DownloadVisualize
BU of 7xmk by Molmil
Crystal structure of human RIPK1 kinase domain in complex with compound SKLB923
Descriptor: 5-[2-(cyclopropylcarbonylamino)-[1,2,4]triazolo[1,5-a]pyridin-7-yl]-N-[(1S)-1-(3-fluorophenyl)ethyl]-1-methyl-indole-3-carboxamide, IODIDE ION, Receptor-interacting serine/threonine-protein kinase 1
Authors:Zhang, L, Wang, Y, Li, Y, Yang, S.
Deposit date:2022-04-26
Release date:2023-04-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.376 Å)
Cite:From Hit to Lead: Structure-Based Optimization of Novel Selective Inhibitors of Receptor-Interacting Protein Kinase 1 (RIPK1) for the Treatment of Inflammatory Diseases.
J.Med.Chem., 67, 2024
7XZ4
DownloadVisualize
BU of 7xz4 by Molmil
Crystal structure of ferritin from Setaria italica
Descriptor: FE (III) ION, Ferritin, PHOSPHATE ION
Authors:Wang, W.M, Wang, Y, Wang, H.F.
Deposit date:2022-06-02
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Extension Peptide of Plant Ferritin from Setaria italica Presents a Novel Fold.
J.Agric.Food Chem., 71, 2023
7VI6
DownloadVisualize
BU of 7vi6 by Molmil
Crystal structure of GH3 beta-N-acetylhexosaminidase Amuc_2109 from Akkermansia muciniphila
Descriptor: Beta-N-acetylhexosaminidase, CHLORIDE ION, MAGNESIUM ION
Authors:Qian, K, Yang, W, Chen, X, Wang, Y, Zhang, M, Wang, M.
Deposit date:2021-09-26
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and structural characterization of a GH3 beta-N-acetylhexosaminidase from Akkermansia muciniphila involved in mucin degradation
Biochem.Biophys.Res.Commun., 589, 2022
7VI7
DownloadVisualize
BU of 7vi7 by Molmil
Crystal structure of GH3 beta-N-acetylhexosaminidase Amuc_2109 from Akkermansia muciniphila in complex with GlcNAc
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta-N-acetylhexosaminidase, CHLORIDE ION, ...
Authors:Qian, K, Yang, W, Chen, X, Wang, Y, Zhang, M, Wang, M.
Deposit date:2021-09-26
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and structural characterization of a GH3 beta-N-acetylhexosaminidase from Akkermansia muciniphila involved in mucin degradation
Biochem.Biophys.Res.Commun., 589, 2022
7VOO
DownloadVisualize
BU of 7voo by Molmil
Induced alpha-2-macroglobulin monomer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-2-macroglobulin, ...
Authors:Huang, X, Wang, Y, Ping, Z.
Deposit date:2021-10-14
Release date:2022-10-19
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures reveal the dynamic transformation of human alpha-2-macroglobulin working as a protease inhibitor.
Sci China Life Sci, 65, 2022
7X63
DownloadVisualize
BU of 7x63 by Molmil
SARS-CoV-2-Beta-RBD and BD-236-GWP/P-VK antibody complex
Descriptor: BD-236 Fab heavy chain, BD-236 Fab light chain, Spike protein S1
Authors:Shi, R, Wang, Y, Wu, Z, Han, X, Yan, J.
Deposit date:2022-03-06
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:SARS-CoV-2-Beta-RBD and BD-236-GWP/P-VK antibody complex
To Be Published
7XIK
DownloadVisualize
BU of 7xik by Molmil
SARS-CoV-2-Omicron-RBD and B38-GWP/P-VK antibody complex
Descriptor: B38 Fab heavy chain, B38 Fab light chain, Spike protein S1
Authors:Shi, R, Wang, Y, Wu, Z, Han, X, Yan, J.
Deposit date:2022-04-13
Release date:2023-04-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:SARS-CoV-2-Omicron-RBD and B38-GWP/P-VK antibody complex
To Be Published
7XIL
DownloadVisualize
BU of 7xil by Molmil
SARS-CoV-2-Beta-RBD and B38-GWP/P-VK antibody complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, B38 Fab heavy chain, B38 Fab light chain, ...
Authors:Shi, R, Wang, Y, Wu, Z, Han, X, Yan, J.
Deposit date:2022-04-13
Release date:2023-04-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:SARS-CoV-2-Beta-RBD and B38-GWP/P-VK antibody complex
To Be Published
7X66
DownloadVisualize
BU of 7x66 by Molmil
SARS-CoV-2-Omicron-RBD and BD-236-GWP/P-VK antibody complex
Descriptor: BD-236 Fab heavy chain, BD-236 Fab light chain, Spike protein S1
Authors:Shi, R, Wang, Y, Wu, Z, Han, X, Yan, J.
Deposit date:2022-03-06
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SARS-CoV-2-Omicron-RBD and BD-236-GWP/P-VK antibody complex
To Be Published
7X4Y
DownloadVisualize
BU of 7x4y by Molmil
Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP-GABA complex
Descriptor: GAMMA-AMINO-BUTANOIC ACID, Glutamate decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Liu, S, Du, G, Wang, Y, Wen, B, Xin, F.
Deposit date:2022-03-03
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Coordinated regulation of Bacteroides thetaiotaomicron glutamate decarboxylase activity by multiple elements under different pH.
Food Chem, 403, 2023
7X52
DownloadVisualize
BU of 7x52 by Molmil
Crystal structure of Bacteroides thetaiotaomicron glutamate decarboxylase BTGAD-PLP complex
Descriptor: ACETATE ION, Glutamate decarboxylase, MALONATE ION, ...
Authors:Liu, S, Du, G, Wang, Y, Wen, B, Xin, F.
Deposit date:2022-03-03
Release date:2023-04-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Coordinated regulation of Bacteroides thetaiotaomicron glutamate decarboxylase activity by multiple elements under different pH.
Food Chem, 403, 2023
7YL0
DownloadVisualize
BU of 7yl0 by Molmil
Structure of hIAPP-TF-type2
Descriptor: Islet amyloid polypeptide
Authors:Li, D, Zhang, X, Wang, Y, Zhu, P.
Deposit date:2022-07-25
Release date:2022-12-28
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A new polymorphism of human amylin fibrils with similar protofilaments and a conserved core.
Iscience, 25, 2022
7YKW
DownloadVisualize
BU of 7ykw by Molmil
Structure of hIAPP fibril at 3.6 Angstroms resolution
Descriptor: Islet amyloid polypeptide
Authors:Li, D, Zhang, X, Wang, Y, Zhu, P.
Deposit date:2022-07-25
Release date:2023-01-18
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:A new polymorphism of human amylin fibrils with similar protofilaments and a conserved core.
Iscience, 25, 2022
7VON
DownloadVisualize
BU of 7von by Molmil
Native alpha-2-macroglobulin monomer
Descriptor: Alpha-2-macroglobulin
Authors:Huang, X, Wang, Y.
Deposit date:2021-10-14
Release date:2022-11-16
Last modified:2022-12-07
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Cryo-EM structures reveal the dynamic transformation of human alpha-2-macroglobulin working as a protease inhibitor.
Sci China Life Sci, 65, 2022
6OVB
DownloadVisualize
BU of 6ovb by Molmil
Crystal structure of a Bacillus thuringiensis Cry1Da tryptic core variant
Descriptor: Active core crystal toxin protein 1D
Authors:Rydel, T.J, Halls, C, Evdokimov, A.G, Beishir, S.C.
Deposit date:2019-05-07
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Bacillus thuringiensis Cry1Da_7 and Cry1B.868 Protein Interactions with Novel Receptors Allow Control of Resistant Fall Armyworms, Spodoptera frugiperda (J.E. Smith).
Appl.Environ.Microbiol., 85, 2019
7YMK
DownloadVisualize
BU of 7ymk by Molmil
Estrogen Receptor Alpha Ligand Binding Domain C381S C417S Y537S Mutant in Complex with an Covalent Selective Estrogen Receptor Degrader 29c and GRIP Peptide
Descriptor: DI(HYDROXYETHYL)ETHER, Estrogen receptor, Grip peptide, ...
Authors:Min, J, Hu, H.B, Yang, Y, Dong, C.E, Zhou, H.B, Chen, C.-C, Guo, R.-T.
Deposit date:2022-07-28
Release date:2023-05-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Discovery of novel covalent selective estrogen receptor degraders against endocrine-resistant breast cancer.
Acta Pharm Sin B, 13, 2023
9IJB
DownloadVisualize
BU of 9ijb by Molmil
Crystal structure and function analysis of a highly potential drug target 6-phosphogluconate dehydrogenase in Mycobacterium tuberculosis
Descriptor: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating
Authors:Wang, Y.Z, Ren, X.Q, Li, T, Zhang, R.D.
Deposit date:2024-06-22
Release date:2024-07-03
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.740405 Å)
Cite:Crystal structure and function analysis of 6-phosphogluconate dehydrogenase in Mycobacterium tuberculosis.
Biochem.Biophys.Res.Commun., 731, 2024
3RYT
DownloadVisualize
BU of 3ryt by Molmil
The Plexin A1 intracellular region in complex with Rac1
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Plexin-A1, ...
Authors:Zhang, X, He, H.
Deposit date:2011-05-11
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.582 Å)
Cite:Plexins Are GTPase-Activating Proteins for Rap and Are Activated by Induced Dimerization.
Sci.Signal., 5, 2012
8GUN
DownloadVisualize
BU of 8gun by Molmil
Crystal structure of mutant H528A of EsaD from Staphylococcus aureus
Descriptor: MAGNESIUM ION, Type VII secretion system protein EssD
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2022-09-13
Release date:2022-11-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.30001378 Å)
Cite:A toxin-deformation dependent inhibition mechanism in the T7SS toxin-antitoxin system of Gram-positive bacteria.
Nat Commun, 13, 2022
8GUP
DownloadVisualize
BU of 8gup by Molmil
Crystal structure of EsaG from Staphylococcus aureus
Descriptor: CITRIC ACID, Type VII secretion system protein EsaG
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2022-09-13
Release date:2022-11-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.298725 Å)
Cite:A toxin-deformation dependent inhibition mechanism in the T7SS toxin-antitoxin system of Gram-positive bacteria.
Nat Commun, 13, 2022
8GUO
DownloadVisualize
BU of 8guo by Molmil
Crystal structure of the nuclease domain of EsaD in complex with EsaG from Staphylococcus aureus
Descriptor: Type VII secretion system protein EsaG, Type VII secretion system protein EssD
Authors:Zhang, Z.M, Wang, Y.J.
Deposit date:2022-09-13
Release date:2022-11-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5939517 Å)
Cite:A toxin-deformation dependent inhibition mechanism in the T7SS toxin-antitoxin system of Gram-positive bacteria.
Nat Commun, 13, 2022
4O9S
DownloadVisualize
BU of 4o9s by Molmil
Crystal structure of Retinol-Binding Protein 4 (RBP4)in complex with a non-retinoid ligand
Descriptor: 1,2-ETHANEDIOL, 1-[4-(7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(12),2(6),8,10-tetraen-12-yl)piperazin-1-yl]-2-[2-(trifluoromethyl)phenyl]ethanone, CHLORIDE ION, ...
Authors:Wang, Z, Johnstone, S, Walker, N.P.
Deposit date:2014-01-02
Release date:2014-07-02
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-assisted discovery of the first non-retinoid ligands for Retinol-Binding Protein 4.
Bioorg.Med.Chem.Lett., 24, 2014

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon