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8RKI
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BU of 8rki by Molmil
Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament fragment
Descriptor: Choriogenin H, YTTERBIUM (III) ION, Zona pellucida sperm-binding protein 3, ...
Authors:Wiseman, B, Zamora-Caballero, S, de Sanctis, D, Yasumasu, S, Jovine, L.
Deposit date:2023-12-25
Release date:2024-03-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
1UKX
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BU of 1ukx by Molmil
Solution structure of the RWD domain of mouse GCN2
Descriptor: GCN2 eIF2alpha kinase
Authors:Nameki, N, Yoneyama, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-03
Release date:2004-08-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the RWD domain of the mouse GCN2 protein.
Protein Sci., 13, 2004
8BQU
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BU of 8bqu by Molmil
Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament
Descriptor: Choriogenin H, Zona pellucida sperm-binding protein 3, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Bokhove, M, de Sanctis, D, Yasumasu, S, Jovine, L.
Deposit date:2022-11-21
Release date:2024-03-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
2CUJ
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BU of 2cuj by Molmil
Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like
Descriptor: transcriptional adaptor 2-like
Authors:Yoneyama, M, Umehara, T, Sato, M, Tochio, N, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-26
Release date:2005-11-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
2CU7
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BU of 2cu7 by Molmil
Solution structure of the SANT domain of human KIAA1915 protein
Descriptor: KIAA1915 protein
Authors:Yoneyama, M, Umehara, T, Saito, K, Tochio, N, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-25
Release date:2005-11-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
6TQL
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BU of 6tql by Molmil
Cryo-EM of elastase-treated human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Stsiapanava, A, Xu, C, Carroni, M, Wu, B, Jovine, L.
Deposit date:2019-12-16
Release date:2020-11-04
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Cryo-EM structure of native human uromodulin, a zona pellucida module polymer.
Embo J., 39, 2020
6TQK
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BU of 6tqk by Molmil
Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Uromodulin, ...
Authors:Stsiapanava, A, Xu, C, Carroni, M, Wu, B, Jovine, L.
Deposit date:2019-12-16
Release date:2020-11-04
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM structure of native human uromodulin, a zona pellucida module polymer.
Embo J., 39, 2020
2RR4
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BU of 2rr4 by Molmil
Complex structure of the zf-CW domain and the H3K4me3 peptide
Descriptor: Histone H3, ZINC ION, Zinc finger CW-type PWWP domain protein 1
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-03-24
Release date:2010-09-15
Last modified:2025-03-26
Method:SOLUTION NMR
Cite:Structural insight into the zinc finger CW domain as a histone modification reader
Structure, 18, 2010
5OSQ
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BU of 5osq by Molmil
ZP-N domain of mammalian sperm receptor ZP3 (crystal form II, processed in P21221)
Descriptor: CALCIUM ION, Maltose-binding periplasmic protein,Zona pellucida sperm-binding protein 3, TRIETHYLENE GLYCOL, ...
Authors:Jovine, L, Monne, M.
Deposit date:2017-08-18
Release date:2017-09-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats
Nature, 456, 2008
2RPP
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BU of 2rpp by Molmil
Solution structure of Tandem zinc finger domain 12 in Muscleblind-like protein 2
Descriptor: Muscleblind-like protein 2, ZINC ION
Authors:Abe, C, Dang, W, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-06-24
Release date:2009-05-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the RNA binding domain in the human muscleblind-like protein 2
Protein Sci., 18, 2009
4WRN
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BU of 4wrn by Molmil
Crystal structure of the polymerization region of human uromodulin/Tamm-Horsfall protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Maltose-binding periplasmic protein,Uromodulin, ZINC ION, ...
Authors:Bokhove, M, De Sanctis, D, Jovine, L.
Deposit date:2014-10-24
Release date:2016-01-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A structured interdomain linker directs self-polymerization of human uromodulin.
Proc.Natl.Acad.Sci.USA, 113, 2016
1IXD
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BU of 1ixd by Molmil
Solution structure of the CAP-GLY domain from human cylindromatosis tomour-suppressor CYLD
Descriptor: Cylindromatosis tumour-suppressor CYLD
Authors:Saito, K, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-06-19
Release date:2002-12-19
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma
STRUCTURE, 12, 2004
1UGO
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BU of 1ugo by Molmil
Solution structure of the first Murine BAG domain of Bcl2-associated athanogene 5
Descriptor: Bcl2-associated athanogene 5
Authors:Endoh, H, Hayashi, F, Seimiya, K, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-17
Release date:2004-08-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
1IVZ
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BU of 1ivz by Molmil
Solution structure of the SEA domain from murine hypothetical protein homologous to human mucin 16
Descriptor: hypothetical protein 1110008I14RIK
Authors:Maeda, T, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-04-02
Release date:2002-10-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)
J.Biol.Chem., 279, 2004
1IUL
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BU of 1iul by Molmil
The structure of cell-free ID.343 from Thermus thermophilus
Descriptor: hypothetical protein TT1466
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-07-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta Crystallogr.,Sect.D, 59, 2003
1IUK
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BU of 1iuk by Molmil
The structure of native ID.343 from Thermus thermophilus
Descriptor: hypothetical protein TT1466
Authors:Wada, T, Shirouzu, M, Park, S.-Y, Tame, J.R, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-07-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of a conserved CoA-binding protein synthesized by a cell-free system.
Acta Crystallogr.,Sect.D, 59, 2003
5HZV
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BU of 5hzv by Molmil
Crystal structure of the zona pellucida module of human endoglin/CD105
Descriptor: GLYCEROL, Maltose-binding periplasmic protein,Endoglin, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Bokhove, M, Saito, T, Jovine, L.
Deposit date:2016-02-03
Release date:2017-06-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1.
Cell Rep, 19, 2017
2DCE
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BU of 2dce by Molmil
Solution structure of the SWIRM domain of human KIAA1915 protein
Descriptor: KIAA1915 protein
Authors:Yoneyama, M, Tochio, N, Umehara, T, Koshiba, S, Inoue, M, Tanaka, A, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-01-06
Release date:2006-07-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural and Functional Differences of SWIRM Domain Subtypes
J.Mol.Biol., 369, 2007
2E61
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BU of 2e61 by Molmil
Solution structure of the zf-CW domain in zinc finger CW-type PWWP domain protein 1
Descriptor: ZINC ION, Zinc finger CW-type PWWP domain protein 1
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-25
Release date:2007-06-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into the zinc finger CW domain as a histone modification reader
Structure, 18, 2010
2E5S
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BU of 2e5s by Molmil
Solution structure of the zf-CCCHx2 domain of muscleblind-like 2, isoform 1 [Homo sapiens]
Descriptor: OTTHUMP00000018578, ZINC ION
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-22
Release date:2007-06-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the RNA binding domain in the human muscleblind-like protein 2
Protein Sci., 18, 2009
2DDQ
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BU of 2ddq by Molmil
Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE, R310 antibody heavy chain, ...
Authors:Ito, S.
Deposit date:2006-02-02
Release date:2006-07-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Bispecific abs against modified protein and DNA with oxidized lipids
Proc.Natl.Acad.Sci.Usa, 103, 2006
1WIJ
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BU of 1wij by Molmil
Solution Structure of the DNA-Binding Domain of Ethylene-Insensitive3-Like3
Descriptor: ETHYLENE-INSENSITIVE3-like 3 protein
Authors:Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
J.Mol.Biol., 348, 2005
1X4S
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BU of 1x4s by Molmil
Solution structure of zinc finger HIT domain in protein FON
Descriptor: ZINC ION, Zinc finger HIT domain containing protein 2
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-14
Release date:2005-11-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zinc finger HIT domain in protein FON
Protein Sci., 16, 2007
1WJ2
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BU of 1wj2 by Molmil
Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Descriptor: Probable WRKY transcription factor 4, ZINC ION
Authors:Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of an Arabidopsis WRKY DNA binding domain.
Plant Cell, 17, 2005
1WID
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BU of 1wid by Molmil
Solution Structure of the B3 DNA-Binding Domain of RAV1
Descriptor: DNA-binding protein RAV1
Authors:Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1
Plant Cell, 16, 2004

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