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Crystal structure of imidazo pyrimidine derivative bound to the kinase domain of human LCK, (Auto-phosphorylated on TYR394)
Descriptor:	7-(3,4-dimethoxyphenyl)-5-(ethylsulfanyl)imidazo[1,2-c]pyrimidine, DIMETHYL SULFOXIDE, Proto-oncogene tyrosine-protein kinase LCK, ...
Authors:	Tsuji, E.
Deposit date:	2010-01-05
Release date:	2010-06-30
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Ab initio fragment molecular orbital study of ligand binding to leukocyte-specific protein tyrosine (LCK) kinase To be Published

2ZTH

Crystal structure of holo form of rat catechol-o-methyltransferase
Descriptor:	Catechol O-methyltransferase, MAGNESIUM ION, S-ADENOSYLMETHIONINE
Authors:	Tsuji, E.
Deposit date:	2008-10-01
Release date:	2009-01-13
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Crystal structures of the Apo and Holo form of rat catechol-O-methyltransferase J.Struct.Biol., 165, 2009

2ZLB

Crystal structure of APO form of rat catechol-O-methyltransferase
Descriptor:	Catechol O-methyltransferase, SULFATE ION
Authors:	Tsuji, E.
Deposit date:	2008-04-04
Release date:	2008-10-07
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structures of the Apo and Holo form of rat catechol-O-methyltransferase J.Struct.Biol., 165, 2009

3ACK

Crystal structure of Pyrrolo pyrazine derivative bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Descriptor:	6-(5-methoxy-1-methyl-1H-indol-3-yl)-5H-pyrrolo[2,3-b]pyrazine, DIMETHYL SULFOXIDE, Proto-oncogene tyrosine-protein kinase LCK, ...
Authors:	Tsuji, E.
Deposit date:	2010-01-05
Release date:	2010-06-30
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Ab initio fragment molecular orbital study of ligand binding to leukocyte-specific protein tyrosine (LCK) kinase To be Published

3AD4

Crystal Structure of Methoxy Benzofuran Derivative bound to the Kinase domain of human LCK, (auto-phosphorylated on TYR394)
Descriptor:	(4-chlorophenyl)(5-methoxy-1-benzofuran-2-yl)methanone, (4S)-2-METHYL-2,4-PENTANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:	Tsuji, E.
Deposit date:	2010-01-14
Release date:	2011-01-19
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Ab initio fragment molecular orbital study of ligand binding to leukocyte-specific protein tyrosine (LCK) kinase To be Published

1YNR

Crystal structure of the cytochrome c-552 from Hydrogenobacter thermophilus at 2.0 resolution
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, Cytochrome c-552, HEME C, ...
Authors:	Travaglini-Allocatelli, C, Gianni, S, Dubey, V.K, Borgia, A, Di Matteo, A, Bonivento, D, Cutruzzola, F, Bren, K.L, Brunori, M.
Deposit date:	2005-01-25
Release date:	2005-05-17
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	An Obligatory Intermediate in the Folding Pathway of Cytochrome c552 from Hydrogenobacter thermophilus J.Biol.Chem., 280, 2005

4WX1

Structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant F66A determined from a crystal soaked with UDP-Galactopyranose
Descriptor:	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, GLYCEROL, SULFATE ION, ...
Authors:	Qureshi, I.A, Chaudhary, R.
Deposit date:	2014-11-13
Release date:	2014-12-03
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Contributions of Unique Active Site Residues of Eukaryotic UDP-Galactopyranose Mutases to Substrate Recognition and Active Site Dynamics. Biochemistry, 53, 2014

5GUH

Crystal structure of silkworm PIWI-clade Argonaute Siwi bound to piRNA
Descriptor:	MAGNESIUM ION, PIWI, RNA (28-MER)
Authors:	Matsumoto, N, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:	2016-08-29
Release date:	2016-10-19
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Crystal Structure of Silkworm PIWI-Clade Argonaute Siwi Bound to piRNA Cell, 167, 2016

7VWF

Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic agonist TIPP204
Descriptor:	(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside
Authors:	Oyama, T, Miyachi, H.
Deposit date:	2021-11-10
Release date:	2022-02-09
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022

7VWG

Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic alpha/delta dual agonist JKPL38
Descriptor:	(2S)-2-[[4-propoxy-3-[[[4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]methyl]butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside
Authors:	Oyama, T, Miyachi, H.
Deposit date:	2021-11-10
Release date:	2022-02-09
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022

7VWH

human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic agonist JKPL39
Descriptor:	(2S)-2-[[4-hexoxy-3-[[[4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]methyl]butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside
Authors:	Oyama, T, Miyachi, H.
Deposit date:	2021-11-10
Release date:	2022-02-09
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022

7VWE

Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic partial agonist JK122
Descriptor:	5-[4-butoxy-3-[[[2-fluoranyl-4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]-4,6-dimethyl-pyridine-3-carboxylic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside
Authors:	Oyama, T, Miyachi, H.
Deposit date:	2021-11-10
Release date:	2022-02-09
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022

1WP4

Structure of TT368 protein from Thermus Thermophilus HB8
Descriptor:	3-hydroxyisobutyrate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:	Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-08-30
Release date:	2005-08-30
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8 J.Mol.Biol., 352, 2005

1ZAG

HUMAN ZINC-ALPHA-2-GLYCOPROTEIN
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:	Chirino, A.J, Sanchez, L.M, Bjorkman, P.J.
Deposit date:	1999-02-02
Release date:	1999-03-31
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Crystal structure of human ZAG, a fat-depleting factor related to MHC molecules. Science, 283, 1999

2DCQ

Fully automated NMR structure determination of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
Descriptor:	Putative protein At4g01050
Authors:	Lopez-Mendez, B, Guntert, P.
Deposit date:	2006-01-12
Release date:	2006-10-17
Last modified:	2024-05-29
Method:	SOLUTION NMR
Cite:	Automated protein structure determination from NMR spectra J.AM.CHEM.SOC., 128, 2006

6ITZ

Peroxiredoxin from Thermococcus kodakaraensis
Descriptor:	Peroxiredoxin
Authors:	Nakamura, T, Himiyama, T.
Deposit date:	2018-11-27
Release date:	2019-03-06
Last modified:	2019-07-17
Method:	X-RAY DIFFRACTION (2.96 Å)
Cite:	Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis. J.Biochem., 166, 2019

6IU1

Peroxiredoxin from Pyrococcus horikoshii 0Cys mutant)
Descriptor:	Peroxiredoxin
Authors:	Nakamura, T, Himiyama, T.
Deposit date:	2018-11-27
Release date:	2019-03-06
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.89 Å)
Cite:	Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis. J.Biochem., 166, 2019

2RSO

Solution structure of the chromodomain of Swi6
Descriptor:	Chromatin-associated protein swi6
Authors:	Shimojo, H, Nishimura, Y.
Deposit date:	2012-04-18
Release date:	2012-08-29
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing Mol.Cell, 47, 2012

6IU0

Peroxiredoxin from Thermococcus kodakaraensis (0Cys mutant)
Descriptor:	Peroxiredoxin
Authors:	Nakamura, T, Himiyama, T.
Deposit date:	2018-11-27
Release date:	2019-03-06
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis. J.Biochem., 166, 2019

2QR0

Structure of VEGF complexed to a Fab containing TYR and SER in the CDRs
Descriptor:	Fab-Fragment Heavy Chain, Fab-Fragment Light Chain, Vascular endothelial growth factor A
Authors:	Wiesmann, C.
Deposit date:	2007-07-27
Release date:	2007-08-14
Last modified:	2017-10-25
Method:	X-RAY DIFFRACTION (3.5 Å)
Cite:	High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries J.Mol.Biol., 373, 2007

3VYE

Human renin in complex with inhibitor 7
Descriptor:	(3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]-N-(3-methylbutyl)piperidine-3-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin
Authors:	Takahashi, M, Matsui, Y, Hanzawa, H.
Deposit date:	2012-09-24
Release date:	2012-12-19
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Design and discovery of new (3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]piperidine-3-carboxamides as potent renin inhibitors Bioorg.Med.Chem.Lett., 22, 2012

3VSX

Human renin in complex with compound 18
Descriptor:	(2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-6-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]-4-hydroxy-2-(propan-2-yl)hexanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin
Authors:	Takahashi, M, Hanzawa, H.
Deposit date:	2012-05-11
Release date:	2012-07-25
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Design and optimization of novel (2S,4S,5S)-5-amino-6-(2,2-dimethyl-5-oxo-4-phenylpiperazin-1-yl)-4-hydroxy-2-isopropylhexanamides as renin inhibitors Bioorg.Med.Chem.Lett., 22, 2012

3VYD

Human renin in complex with inhibitor 6
Descriptor:	(3S,5R)-5-{[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]methyl}-N-(3-methylbutyl)piperidine-3-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin
Authors:	Takahashi, M, Hanzawa, H.
Deposit date:	2012-09-24
Release date:	2012-12-19
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.81 Å)
Cite:	Design and discovery of new (3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]piperidine-3-carboxamides as potent renin inhibitors Bioorg.Med.Chem.Lett., 22, 2012

3VSW

Human renin in complex with compound 8
Descriptor:	(2S,4S,5S)-5-amino-N-(3-amino-2,2-dimethyl-3-oxopropyl)-4-hydroxy-6-{4-[2-(3-methoxypropoxy)phenyl]-3-oxopiperazin-1-yl}-2-(propan-2-yl)hexanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin
Authors:	Takahashi, M, Hanzawa, H.
Deposit date:	2012-05-11
Release date:	2012-07-25
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Design and optimization of novel (2S,4S,5S)-5-amino-6-(2,2-dimethyl-5-oxo-4-phenylpiperazin-1-yl)-4-hydroxy-2-isopropylhexanamides as renin inhibitors Bioorg.Med.Chem.Lett., 22, 2012

3VYF

Human renin in complex with inhibitor 9
Descriptor:	(3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]-N-(2,6-dimethylheptan-4-yl)piperidine-3-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Renin
Authors:	Takahashi, M, Hanzawa, H.
Deposit date:	2012-09-24
Release date:	2012-12-19
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Design and discovery of new (3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]piperidine-3-carboxamides as potent renin inhibitors Bioorg.Med.Chem.Lett., 22, 2012

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