8JUG
| Crystal structure of human MMP-7 in complex with inhibitor | Descriptor: | CALCIUM ION, Matrilysin, Peptide Inhibitor, ... | Authors: | Kamitani, M, Abe-Sato, K, Oka, Y. | Deposit date: | 2023-06-26 | Release date: | 2023-11-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Structure-Based Optimization and Biological Evaluation of Potent and Selective MMP-7 Inhibitors for Kidney Fibrosis. J.Med.Chem., 66, 2023
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1HP9
| kappa-Hefutoxins: a novel Class of Potassium Channel Toxins from Scorpion venom | Descriptor: | kappa-hefutoxin 1 | Authors: | Srinivasan, K.N, Sivaraja, V, Huys, I, Sasaki, T, Cheng, B, Kumar, T.K.S, Sato, K, Tytgat, J, Yu, C, Brian Chia, C.S, Ranganathan, S, Bowie, J.H, Kini, R.M, Gopalakrishnakone, P. | Deposit date: | 2000-12-12 | Release date: | 2002-08-28 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | kappa-Hefutoxin1, a novel toxin from the scorpion Heterometrus fulvipes with unique structure and function. Importance of the functional diad in potassium channel selectivity. J.Biol.Chem., 277, 2002
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2RU8
| DnaT C-terminal domain | Descriptor: | Primosomal protein 1 | Authors: | Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T. | Deposit date: | 2014-01-29 | Release date: | 2014-10-08 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex. Febs J., 281, 2014
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2VQA
| Protein-folding location can regulate Mn versus Cu- or Zn-binding. Crystal Structure of MncA. | Descriptor: | ACETATE ION, MANGANESE (II) ION, SLL1358 PROTEIN | Authors: | Tottey, S, Waldron, K.J, Firbank, S.J, Reale, B, Bessant, C, Sato, K, Gray, J, Banfield, M.J, Dennison, C, Robinson, N.J. | Deposit date: | 2008-03-12 | Release date: | 2008-10-28 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | Protein-Folding Location Can Regulate Manganese-Binding Versus Copper- or Zinc-Binding. Nature, 455, 2008
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2XV0
| Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAHAAM), chemically reduced, pH4.8 | Descriptor: | AZURIN, COPPER (I) ION | Authors: | Li, C, Sato, K, Monari, S, Salard, I, Sola, M, Banfield, M.J, Dennison, C. | Deposit date: | 2010-10-22 | Release date: | 2010-12-29 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Metal-Binding Loop Length is a Determinant of the Pka of a Histidine Ligand at a Type 1 Copper Site Inorg.Chem., 50, 2011
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1WQB
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2A70
| Crystal structure of Emp47p carbohydrate recognition domain (CRD), monoclinic crystal form 2 | Descriptor: | 1,2-ETHANEDIOL, Emp47p | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Katoh, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A71
| Crystal structure of Emp47p carbohydrate recognition domain (CRD), orthorhombic crystal form | Descriptor: | Emp47p | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A6W
| Crystal structure of Emp46p carbohydrate recognition domain (CRD), metal-free form | Descriptor: | Emp46p | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A6Y
| Crystal structure of Emp47p carbohydrate recognition domain (CRD), tetragonal crystal form | Descriptor: | Emp47p (form1), SULFATE ION | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A6V
| Crystal structure of Emp46p carbohydrate recognition domain (CRD), potassium-bound form | Descriptor: | 1,2-ETHANEDIOL, Emp46p, POTASSIUM ION | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.52 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A6Z
| Crystal structure of Emp47p carbohydrate recognition domain (CRD), monoclinic crystal form 1 | Descriptor: | Emp47p (form2) | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S. | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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2A6X
| Crystal structure of Emp46p carbohydrate recognition domain (CRD), Y131F mutant | Descriptor: | 1,2-ETHANEDIOL, Emp46p, POTASSIUM ION | Authors: | Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-07-04 | Release date: | 2006-01-31 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p. J.Biol.Chem., 281, 2006
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7X5E
| Nrf2-MafG heterodimer bound with CsMBE1 | Descriptor: | DNA (5'-D(*CP*AP*TP*GP*AP*TP*GP*AP*GP*TP*CP*AP*GP*CP*AP*A)-3'), DNA (5'-D(*GP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP*TP*CP*AP*T)-3'), HEXAETHYLENE GLYCOL, ... | Authors: | Sengoku, T, Shiina, M, Suzuki, K, Hamada, K, Sato, K, Uchiyama, A, Okada, C, Baba, S, Ohta, T, Motohashi, H, Yamamoto, M, Ogata, K. | Deposit date: | 2022-03-04 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Nucleic Acids Res., 50, 2022
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7X5F
| Nrf2-MafG heterodimer bound with CsMBE2 | Descriptor: | Nuclear factor erythroid 2-related factor 2, Synthetic DNA, Transcription factor MafG | Authors: | Sengoku, T, Shiina, M, Suzuki, K, Hamada, K, Sato, K, Uchiyama, A, Okada, C, Baba, S, Ohta, T, Motohashi, H, Yamamoto, M, Ogata, K. | Deposit date: | 2022-03-04 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Nucleic Acids Res., 50, 2022
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7X5G
| Nrf2 (A510Y)-MafG heterodimer bound with CsMBE2 | Descriptor: | DNA (5'-D(*CP*AP*CP*AP*GP*TP*GP*AP*CP*TP*CP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP*CP*TP*GP*T)-3'), Nuclear factor erythroid 2-related factor 2, ... | Authors: | Sengoku, T, Shiina, M, Suzuki, K, Hamada, K, Sato, K, Uchiyama, A, Okada, C, Baba, S, Ohta, T, Motohashi, H, Yamamoto, M, Ogata, K. | Deposit date: | 2022-03-04 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Nucleic Acids Res., 50, 2022
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5AY8
| Crystal structure of human nucleosome containing H3.Y | Descriptor: | CHLORIDE ION, DNA (146-MER), H3.Y, ... | Authors: | Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H. | Deposit date: | 2015-08-10 | Release date: | 2016-04-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structure and function of human histone H3.Y nucleosome Nucleic Acids Res., 44, 2016
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3FFD
| Structure of parathyroid hormone-related protein complexed to a neutralizing monoclonal antibody | Descriptor: | Monoclonal antibody, heavy chain, Fab fragment, ... | Authors: | Mckinstry, W.J, Polekhina, G, Diefenbach-Jagger, H, Ho, P.W.M, Sato, K, Onuma, E, Gillespie, M.T, Martin, T.J, Parker, M.W. | Deposit date: | 2008-12-03 | Release date: | 2009-04-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural basis for antibody discrimination between two hormones that recognize the parathyroid hormone receptor J.Biol.Chem., 284, 2009
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1REY
| HUMAN LYSOZYME-N,N'-DIACETYLCHITOBIOSE COMPLEX | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1996-08-21 | Release date: | 1997-02-12 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling. Biochemistry, 35, 1996
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1REZ
| HUMAN LYSOZYME-N-ACETYLLACTOSAMINE COMPLEX | Descriptor: | GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1996-08-21 | Release date: | 1997-02-12 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling. Biochemistry, 35, 1996
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1REM
| HUMAN LYSOZYME WITH MAN-B1,4-GLCNAC COVALENTLY ATTACHED TO ASP53 | Descriptor: | LYSOZYME, NITRATE ION, R-1,2-PROPANEDIOL, ... | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1998-01-14 | Release date: | 1998-07-15 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | X-ray structure of human lysozyme labelled with 2',3'-epoxypropyl beta-glycoside of man-beta1,4-GlcNAc. Structural change and recognition specificity at subsite B. Acta Crystallogr.,Sect.D, 54, 1998
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1V4Q
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1A13
| G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES | Descriptor: | MASTOPARAN-X | Authors: | Kusunoki, H, Wakamatsu, K, Sato, K, Miyazawa, T, Kohno, T. | Deposit date: | 1997-12-20 | Release date: | 1999-01-13 | Last modified: | 2022-02-16 | Method: | SOLUTION NMR | Cite: | G protein-bound conformation of mastoparan-X: heteronuclear multidimensional transferred nuclear overhauser effect analysis of peptide uniformly enriched with 13C and 15N. Biochemistry, 37, 1998
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1IE6
| SOLUTION STRUCTURE OF IMPERATOXIN A | Descriptor: | IMPERATOXIN A | Authors: | Lee, C.W, Takeuchi, K, Takahashi, H, Sato, K, Shimada, I, Kim, D.H, Kim, J.I. | Deposit date: | 2001-04-07 | Release date: | 2003-06-10 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | Molecular basis of the high-affinity activation of type 1 ryanodine receptors by imperatoxin A. Biochem.J., 377, 2004
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6KJK
| Structure of the N-terminal domain of PorA | Descriptor: | N-terminal domain of PorA (28-171) | Authors: | Handa, Y, Sato, K, Shoji, M, Nakayama, K, Imada, K. | Deposit date: | 2019-07-22 | Release date: | 2020-07-22 | Last modified: | 2020-12-16 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system. Sci Rep, 10, 2020
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