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1V4G
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BU of 1v4g by Molmil
Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B
Descriptor: Glutamate--cysteine ligase
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2003-11-13
Release date:2004-10-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VA6
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BU of 1va6 by Molmil
Crystal structure of Gamma-glutamylcysteine synthetase from Escherichia Coli B complexed with Transition-state analogue
Descriptor: (2S)-2-AMINO-4-[[(2R)-2-CARBOXYBUTYL](PHOSPHONO)SULFONIMIDOYL]BUTANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, Glutamate--cysteine ligase, ...
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2004-02-12
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VBG
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BU of 1vbg by Molmil
Pyruvate Phosphate Dikinase from Maize
Descriptor: MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBH
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BU of 1vbh by Molmil
Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize
Descriptor: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, SULFATE ION, ...
Authors:Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-02-26
Release date:2005-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1IWQ
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BU of 1iwq by Molmil
Crystal Structure of MARCKS calmodulin binding domain peptide complexed with Ca2+/Calmodulin
Descriptor: CALCIUM ION, CALMODULIN, MARCKS
Authors:Yamauchi, E, Nakatsu, T, Matsubara, M, Kato, H, Taniguchi, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-31
Release date:2003-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a MARCKS peptide containing the calmodulin-binding domain in complex with Ca(2+)-calmodulin
NAT.STRUCT.BIOL., 10, 2003
1ISE
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BU of 1ise by Molmil
Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
Descriptor: Ribosome Recycling Factor
Authors:Nakano, H, Yoshida, T, Oka, S, Uchiyama, S, Nishina, K, Ohkubo, T, Kato, H, Yamagata, Y, Kobayashi, Y.
Deposit date:2001-11-30
Release date:2003-10-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a mutant of ribosome recycling factor from Escherichia coli, Arg132Gly
To be Published
3AJB
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BU of 3ajb by Molmil
Crystal Structure of human Pex3p in complex with N-terminal Pex19p peptide
Descriptor: Peroxisomal biogenesis factor 19, Peroxisomal biogenesis factor 3
Authors:Sato, Y, Shibata, H, Nakatsu, T, Kato, H.
Deposit date:2010-05-27
Release date:2010-12-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for docking of peroxisomal membrane protein carrier Pex19p onto its receptor Pex3p
Embo J., 29, 2010
1V2B
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BU of 1v2b by Molmil
Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants
Descriptor: 23-kDa polypeptide of photosystem II oxygen-evolving complex, SULFATE ION, alpha-D-glucopyranose
Authors:Ifuku, K, Nakatsu, T, Kato, H, Sato, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-14
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum
Embo Rep., 5, 2004
7VR5
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BU of 7vr5 by Molmil
Crystal structure of CmABCB1 W114Y/W161Y/W363Y/W364Y/M391W (4WY/M391W) mutant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DECYL-BETA-D-MALTOPYRANOSIDE, Probable ATP-dependent transporter ycf16
Authors:Inoue, Y, Ogawa, H, Kato, H.
Deposit date:2021-10-21
Release date:2022-09-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based alteration of tryptophan residues of the multidrug transporter CmABCB1 to assess substrate binding using fluorescence spectroscopy.
Protein Sci., 31, 2022
3ED1
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BU of 3ed1 by Molmil
Crystal Structure of Rice GID1 complexed with GA3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A3, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-09-02
Release date:2008-11-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
3EBL
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BU of 3ebl by Molmil
Crystal Structure of Rice GID1 complexed with GA4
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GIBBERELLIN A4, Gibberellin receptor GID1, ...
Authors:Shimada, A, Nakatsu, T, Ueguchi-Tanaka, M, Kato, H, Matsuoka, M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for gibberellin recognition by its receptor GID1.
Nature, 456, 2008
1V2Z
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BU of 1v2z by Molmil
Crystal structure of the C-terminal domain of Thermosynechococcus elongatus BP-1 KaiA
Descriptor: circadian clock protein KaiA homolog
Authors:Uzumaki, T, Fujita, M, Nakatsu, T, Hayashi, F, Shibata, H, Itoh, N, Kato, H, Ishiura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-20
Release date:2004-06-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein
NAT.STRUCT.MOL.BIOL., 11, 2004
1I2H
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BU of 1i2h by Molmil
CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN
Descriptor: PSD-ZIP45(HOMER-1C/VESL-1L)
Authors:Irie, K, Nakatsu, T, Mitsuoka, K, Fujiyoshi, Y, Kato, H.
Deposit date:2001-02-09
Release date:2002-05-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Homer 1 Family Conserved Region Reveals the Interaction Between the EVH1 Domain and Own Proline-rich Motif
J.Mol.Biol., 318, 2002
1G4F
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BU of 1g4f by Molmil
NMR STRUCTURE OF THE FIFTH DOMAIN OF HUMAN BETA2-GLYCOPROTEIN I
Descriptor: BETA2-GLYCOPROTEIN I
Authors:Hoshino, M, Hagihara, Y, Nishii, I, Yamazaki, T, Kato, H, Goto, Y.
Deposit date:2000-10-27
Release date:2000-11-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Identification of the phospholipid-binding site of human beta(2)-glycoprotein I domain V by heteronuclear magnetic resonance.
J.Mol.Biol., 304, 2000
1G4G
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BU of 1g4g by Molmil
NMR STRUCTURE OF THE FIFTH DOMAIN OF HUMAN BETA2-GLYCOPROTEIN I
Descriptor: BETA2-GLYCOPROTEIN I
Authors:Hoshino, M, Hagihara, Y, Nishii, I, Yamazaki, T, Kato, H, Goto, Y.
Deposit date:2000-10-27
Release date:2000-11-15
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Identification of the phospholipid-binding site of human beta(2)-glycoprotein I domain V by heteronuclear magnetic resonance.
J.Mol.Biol., 304, 2000
1IRH
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BU of 1irh by Molmil
The Solution Structure of The Third Kunitz Domain of Tissue Factor Pathway Inhibitor
Descriptor: tissue factor pathway inhibitor
Authors:Mine, S, Yamazaki, T, Miyata, T, Hara, S, Kato, H.
Deposit date:2001-10-02
Release date:2002-02-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural mechanism for heparin-binding of the third Kunitz domain of human tissue factor pathway inhibitor.
Biochemistry, 41, 2002
2GLT
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BU of 2glt by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor: GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K, Yamaguchi, H, Kato, H, Nishioka, T, Katsube, Y, Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
2ZZO
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BU of 2zzo by Molmil
Crystal structure of the complex between GP41 fragment N36 and fusion inhibitor C34/S138A
Descriptor: Transmembrane protein
Authors:Watabe, T, Nakano, H, Nakatsu, T, Kato, H, Fujii, N.
Deposit date:2009-02-20
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic study of an HIV-1 fusion inhibitor with the gp41 S138A substitution
J.Mol.Biol., 392, 2009
2D1R
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BU of 2d1r by Molmil
Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP
Descriptor: 2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONE, ADENOSINE MONOPHOSPHATE, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1Q
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BU of 2d1q by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase complexed with MgATP
Descriptor: ADENOSINE MONOPHOSPHATE, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1S
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BU of 2d1s by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue
Descriptor: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
2D1T
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BU of 2d1t by Molmil
Crystal structure of the thermostable Japanese Firefly Luciferase red-color emission S286N mutant complexed with High-energy intermediate analogue
Descriptor: 5'-O-[N-(DEHYDROLUCIFERYL)-SULFAMOYL] ADENOSINE, CHLORIDE ION, Luciferin 4-monooxygenase
Authors:Nakatsu, T, Ichiyama, S, Hiratake, J, Saldanha, A, Kobashi, N, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-31
Release date:2006-03-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural basis for the spectral difference in luciferase bioluminescence.
Nature, 440, 2006
7DQV
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BU of 7dqv by Molmil
Crystal structure of a CmABCB1 mutant
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, MAGNESIUM ION, NITRATE ION, ...
Authors:Matsuoka, K, Nakatsu, T, Kato, H.
Deposit date:2020-12-24
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The crystal structure of the CmABCB1 G132V mutant, which favors the outward-facing state, reveals the mechanism of the pivotal joint between TM1 and TM3.
Protein Sci., 30, 2021
3WMG
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BU of 3wmg by Molmil
Crystal structure of an inward-facing eukaryotic ABC multidrug transporter G277V/A278V/A279V mutant in complex with an cyclic peptide inhibitor, aCAP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP-binding cassette, sub-family B, ...
Authors:Kodan, A, Yamaguchi, T, Nakatsu, T, Sakiyama, K, Hipolito, C.J, Fujioka, A, Hirokane, R, Ikeguchi, K, Watanabe, B, Hirtake, J, Kimura, Y, Suga, H, Ueda, K, Kato, H.
Deposit date:2013-11-18
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog.
Proc.Natl.Acad.Sci.USA, 111, 2014
7FC9
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BU of 7fc9 by Molmil
Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX
Descriptor: ACETATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Pan, D, Oyama, R, Sato, T, Nakane, T, Mizunuma, R, Matsuoka, K, Joti, Y, Tono, K, Nango, E, Iwata, S, Nakatsu, T, Kato, H.
Deposit date:2021-07-14
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of CmABCB1 multi-drug exporter in lipidic mesophase revealed by LCP-SFX.
Iucrj, 9, 2022

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