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METHIONINE AMINOPEPTIDASE FROM HYPERTHERMOPHILE PYROCOCCUS FURIOSUS
Descriptor:	COBALT (II) ION, METHIONINE AMINOPEPTIDASE
Authors:	Tahirov, T.H, Tsukihara, T.
Deposit date:	1997-11-17
Release date:	1998-02-25
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Crystal structure of methionine aminopeptidase from hyperthermophile, Pyrococcus furiosus. J.Mol.Biol., 284, 1998

5CTS

PROPOSED MECHANISM FOR THE CONDENSATION REACTION OF CITRATE SYNTHASE. 1.9-ANGSTROMS STRUCTURE OF THE TERNARY COMPLEX WITH OXALOACETATE AND CARBOXYMETHYL COENZYME A
Descriptor:	CARBOXYMETHYL COENZYME *A, CITRATE SYNTHASE, OXALOACETATE ION
Authors:	Karpusas, M, Branchaud, B, Remington, S.J.
Deposit date:	1989-11-16
Release date:	1990-10-15
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Proposed mechanism for the condensation reaction of citrate synthase: 1.9-A structure of the ternary complex with oxaloacetate and carboxymethyl coenzyme A. Biochemistry, 29, 1990

8TLN

STRUCTURAL COMPARISON SUGGESTS THAT THERMOLYSIN AND RELATED NEUTRAL PROTEASES UNDERGO HINGE-BENDING MOTION DURING CATALYSIS
Descriptor:	CALCIUM ION, DIMETHYL SULFOXIDE, LYSINE, ...
Authors:	Tronrud, D, Matthews, B.W.
Deposit date:	1993-09-01
Release date:	1994-04-30
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis. Biochemistry, 31, 1992

6TMN

Structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond
Descriptor:	CALCIUM ION, N-[(2R,4S)-4-hydroxy-2-(2-methylpropyl)-4-oxido-7-oxo-9-phenyl-3,8-dioxa-6-aza-4-phosphanonan-1-oyl]-L-leucine, THERMOLYSIN, ...
Authors:	Tronrud, D.E, Holden, H.M, Matthews, B.W.
Deposit date:	1987-06-29
Release date:	1989-01-09
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structures of two thermolysin-inhibitor complexes that differ by a single hydrogen bond. Science, 235, 1987

8JT1

COLLAGENASE FROM GRIMONTIA (VIBRIO) HOLLISAE 1706B COMPLEXED WITH GLY-PRO-HYP-GLY-PRO-HYP
Descriptor:	1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-mer peptide, ...
Authors:	Ueshima, S, Yaskawa, K, Takita, T, Mikami, B.
Deposit date:	2023-06-21
Release date:	2024-02-07
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Insights into the catalytic mechanism of Grimontia hollisae collagenase through structural and mutational analyses. Febs Lett., 597, 2023

5TLN

BINDING OF HYDROXAMIC ACID INHIBITORS TO CRYSTALLINE THERMOLYSIN SUGGESTS A PENTACOORDINATE ZINC INTERMEDIATE IN CATALYSIS
Descriptor:	CALCIUM ION, HONH-BENZYLMALONYL-L-ALANYLGLYCINE-P-NITROANILIDE, THERMOLYSIN, ...
Authors:	Matthews, B.W, Holmes, M.A.
Deposit date:	1982-02-08
Release date:	1982-05-26
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Binding of hydroxamic acid inhibitors to crystalline thermolysin suggests a pentacoordinate zinc intermediate in catalysis. Biochemistry, 20, 1981

8J6G

Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
Descriptor:	2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2023-04-25
Release date:	2023-09-20
Method:	NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
Cite:	Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor Acs Catalysis, 2023

1LMT

STRUCTURE OF A CONFORMATIONALLY CONSTRAINED ARG-GLY-ASP SEQUENCE INSERTED INTO HUMAN LYSOZYME
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, HUMAN LYSOZYME
Authors:	Matsushima, M, Song, H.
Deposit date:	1995-01-13
Release date:	1995-03-31
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme. J.Biol.Chem., 270, 1995

2E89

Crystal structure of Aquifex aeolicus TilS in a complex with ATP, Magnesium ion, and L-lysine
Descriptor:	ADENOSINE-5'-TRIPHOSPHATE, LYSINE, MAGNESIUM ION, ...
Authors:	Kuratani, M, Yoshikawa, Y, Takahashi, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2007-01-19
Release date:	2007-11-13
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine To be Published

7YNH

Catalytic intermediate of copper amine oxidase determined by serial femtosecond X-ray crystallography using a single-flow liquid jet system
Descriptor:	COPPER (II) ION, PHENYLACETALDEHYDE, Phenylethylamine oxidase, ...
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2022-07-31
Release date:	2022-11-16
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (1.94 Å)
Cite:	Serial femtosecond X-ray crystallography of an anaerobically formed catalytic intermediate of copper amine oxidase. Acta Crystallogr D Struct Biol, 78, 2022

2TMN

CRYSTALLOGRAPHIC STRUCTURAL ANALYSIS OF PHOSPHORAMIDATES AS INHIBITORS AND TRANSITION-STATE ANALOGS OF THERMOLYSIN
Descriptor:	CALCIUM ION, N~2~-phosphono-L-leucinamide, Thermolysin, ...
Authors:	Tronrud, D.E, Monzingo, A.F, Matthews, B.W.
Deposit date:	1987-06-29
Release date:	1989-01-09
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Crystallographic structural analysis of phosphoramidates as inhibitors and transition-state analogs of thermolysin. Eur.J.Biochem., 157, 1986

7WNP

Crystallographic structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4 determined by both X-ray and neutron diffraction data at 1.72 angstrom resolution.
Descriptor:	COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2022-01-19
Release date:	2022-04-20
Last modified:	2022-05-25
Method:	NEUTRON DIFFRACTION (1.72 Å), X-RAY DIFFRACTION
Cite:	Re-evaluation of protein neutron crystallography with and without X-ray/neutron joint refinement. Iucrj, 9, 2022

7WNO

Crystallographic structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4 determined by only neutron diffraction data.
Descriptor:	COPPER (II) ION, Phenylethylamine oxidase
Authors:	Murakawa, T, Okajima, T.
Deposit date:	2022-01-19
Release date:	2022-04-20
Last modified:	2022-05-25
Method:	NEUTRON DIFFRACTION (1.72 Å)
Cite:	Re-evaluation of protein neutron crystallography with and without X-ray/neutron joint refinement. Iucrj, 9, 2022

1XGS

METHIONINE AMINOPEPTIDASE FROM HYPERTHERMOPHILE PYROCOCCUS FURIOSUS
Descriptor:	COBALT (II) ION, METHIONINE AMINOPEPTIDASE
Authors:	Tahirov, T.H, Tsukihara, T.
Deposit date:	1997-04-25
Release date:	1997-07-07
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Crystal structure of methionine aminopeptidase from hyperthermophile, Pyrococcus furiosus. J.Mol.Biol., 284, 1998

2E21

Crystal structure of TilS in a complex with AMPPNP from Aquifex aeolicus.
Descriptor:	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, tRNA(Ile)-lysidine synthase
Authors:	Kuratani, M, Yoshikawa, Y, Sekine, S, Ishii, T, Shibata, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-11-06
Release date:	2007-11-06
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural basis of the initial binding of tRNA(Ile) lysidine synthetase TilS with ATP and L-lysine To be Published

1LNA

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN
Descriptor:	CALCIUM ION, COBALT (II) ION, DIMETHYL SULFOXIDE, ...
Authors:	Holland, D.R, Hausrath, A.C, Juers, D, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

1LNC

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN
Descriptor:	CALCIUM ION, DIMETHYL SULFOXIDE, LYSINE, ...
Authors:	Holland, D.R, Hausrath, A.C, Juers, D, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

1LNE

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN
Descriptor:	CADMIUM ION, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:	Holland, D.R, Hausrath, A.C, Juers, D, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

1LND

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN
Descriptor:	CALCIUM ION, DIMETHYL SULFOXIDE, LYSINE, ...
Authors:	Holland, D.R, Hausrath, A.C, Juers, D, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

1LNB

A STRUCTURAL ANALYSIS OF METAL SUBSTITUTIONS IN THERMOLYSIN
Descriptor:	CALCIUM ION, DIMETHYL SULFOXIDE, FE (III) ION, ...
Authors:	Holland, D.R, Hausrath, A.C, Juers, D, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

1LNF

A structural analysis of metal substitutions in thermolysin
Descriptor:	CALCIUM ION, DIMETHYL SULFOXIDE, LYSINE, ...
Authors:	Holland, D.R, Matthews, B.W.
Deposit date:	1994-05-13
Release date:	1995-05-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci., 4, 1995

5GOW

Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
Descriptor:	DP1, General transcription factor IIH subunit 1
Authors:	Okuda, M, Nishimura, Y.
Deposit date:	2016-07-29
Release date:	2016-12-07
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH J. Mol. Biol., 428, 2016

7TLN

STRUCTURAL ANALYSIS OF THE INHIBITION OF THERMOLYSIN BY AN ACTIVE-SITE-DIRECTED IRREVERSIBLE INHIBITOR
Descriptor:	2-(ACETYL-HYDROXY-AMINO)-4-METHYL-PENTANOIC ACID METHYL ESTER, CALCIUM ION, THERMOLYSIN, ...
Authors:	Matthews, B.W, Holmes, M.A, Tronrud, D.E.
Deposit date:	1983-01-27
Release date:	1983-03-09
Last modified:	2022-11-23
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structural analysis of the inhibition of thermolysin by an active-site-directed irreversible inhibitor. Biochemistry, 22, 1983

7D5V

Structure of the C646A mutant of peptidylarginine deiminase type III (PAD3)
Descriptor:	1,2-ETHANEDIOL, GLYCEROL, Protein-arginine deiminase type-3
Authors:	Akimoto, M, Mashimo, R, Unno, M.
Deposit date:	2020-09-28
Release date:	2021-06-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (2.102 Å)
Cite:	Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys., 708, 2021

7D56

Structure of the peptidylarginine deiminase type III (PAD3) in complex with Cl-amidine
Descriptor:	1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:	Funabashi, K, Unno, M.
Deposit date:	2020-09-25
Release date:	2021-06-02
Last modified:	2023-11-29
Method:	X-RAY DIFFRACTION (3.175 Å)
Cite:	Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys., 708, 2021

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