1J1S
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![BU of 1j1s by Molmil](/molmil-images/mine/1j1s) | Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE | Authors: | Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A. | Deposit date: | 2002-12-14 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution To be published
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1IQ7
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![BU of 1iq7 by Molmil](/molmil-images/mine/1iq7) | Ovotransferrin, C-Terminal Lobe, Apo Form | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Ovotransferrin, SULFATE ION | Authors: | Mizutani, K, Muralidhara, B.K, Yamashita, H, Tabata, S, Mikami, B, Hirose, M. | Deposit date: | 2001-07-06 | Release date: | 2001-11-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway. J.Biol.Chem., 276, 2001
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1IEJ
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![BU of 1iej by Molmil](/molmil-images/mine/1iej) | OVOTRANSFERRIN, N-TERMINAL LOBE, HOLO FORM, AT 1.65 A RESOLUTION | Descriptor: | CARBONATE ION, FE (III) ION, OVOTRANSFERRIN | Authors: | Mizutani, K, Mikami, B, Hirose, M. | Deposit date: | 2001-04-10 | Release date: | 2001-06-20 | Last modified: | 2017-10-04 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Domain closure mechanism in transferrins: new viewpoints about the hinge structure and motion as deduced from high resolution crystal structures of ovotransferrin N-lobe. J.Mol.Biol., 309, 2001
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1J1Q
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![BU of 1j1q by Molmil](/molmil-images/mine/1j1q) | Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral protein S | Authors: | Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A. | Deposit date: | 2002-12-14 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution To be published
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1J1M
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![BU of 1j1m by Molmil](/molmil-images/mine/1j1m) | Ricin A-Chain (Recombinant) at 100K | Descriptor: | Ricin, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | Authors: | Watanabe, K, Motoshima, H. | Deposit date: | 2002-12-10 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Ricin A-Chain (Recombinant) at 100K To be published
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7EQD
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![BU of 7eqd by Molmil](/molmil-images/mine/7eqd) | STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM | Descriptor: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E},18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22,26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione, CARDIOLIPIN, ... | Authors: | Tani, K, Kanno, R, Ji, X.-C, Yu, L.-J, Hall, M, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y. | Deposit date: | 2021-05-01 | Release date: | 2021-08-18 | Method: | ELECTRON MICROSCOPY (2.76 Å) | Cite: | Cryo-EM Structure of the Photosynthetic LH1-RC Complex from Rhodospirillum rubrum . Biochemistry, 2021
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7F0L
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![BU of 7f0l by Molmil](/molmil-images/mine/7f0l) | STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES MONOMER | Descriptor: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Antenna pigment protein beta chain, BACTERIOCHLOROPHYLL A, ... | Authors: | Tani, K, Nagashima, V.P, Kanno, R, Kawamura, S, Kikuchi, R, Ji, X.-C, Hall, M, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y. | Deposit date: | 2021-06-05 | Release date: | 2021-11-10 | Last modified: | 2021-11-17 | Method: | ELECTRON MICROSCOPY (2.94 Å) | Cite: | A previously unrecognized membrane protein in the Rhodobacter sphaeroides LH1-RC photocomplex. Nat Commun, 12, 2021
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1NFT
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![BU of 1nft by Molmil](/molmil-images/mine/1nft) | OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM | Descriptor: | FE (III) ION, NITRILOTRIACETIC ACID, PROTEIN (OVOTRANSFERRIN), ... | Authors: | Mizutani, K, Yamashita, H, Kurokawa, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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1X26
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![BU of 1x26 by Molmil](/molmil-images/mine/1x26) | Solution structure of the AA-mismatch DNA complexed with naphthyridine-azaquinolone | Descriptor: | 5'-D(*CP*AP*TP*TP*CP*AP*GP*TP*TP*AP*G)-3', 5'-D(*CP*TP*AP*AP*CP*AP*GP*AP*AP*TP*G)-3', N~3~-{3-[(7-METHYL-1,8-NAPHTHYRIDIN-2-YL)AMINO]-3-OXOPROPYL}-N~1~-[(7-OXO-7,8-DIHYDRO-1,8-NAPHTHYRIDIN-2-YL)METHYL]-BET A-ALANINAMIDE | Authors: | Nakatani, K, Hagihara, S, Goto, Y, Kobori, A, Hagihara, M, Hayashi, G, Kyo, M, Nomura, M, Mishima, M, Kojima, C. | Deposit date: | 2005-04-20 | Release date: | 2006-04-04 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Small-molecule ligand induces nucleotide flipping in (CAG)n trinucleotide repeats Nat.Chem.Biol., 1, 2005
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1TFA
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![BU of 1tfa by Molmil](/molmil-images/mine/1tfa) | OVOTRANSFERRIN, N-TERMINAL LOBE, APO FORM | Descriptor: | PROTEIN (OVOTRANSFERRIN), SULFATE ION | Authors: | Mizutani, K, Yamashita, H, Mikami, B, Hirose, M. | Deposit date: | 1999-01-07 | Release date: | 1999-01-13 | Last modified: | 2018-04-04 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe. J.Biol.Chem., 274, 1999
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2D2Q
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![BU of 2d2q by Molmil](/molmil-images/mine/2d2q) | |
2D3I
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![BU of 2d3i by Molmil](/molmil-images/mine/2d3i) | Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution | Descriptor: | ALUMINUM ION, BICARBONATE ION, Ovotransferrin | Authors: | Mizutani, K, Mikami, B, Aibara, S, Hirose, M. | Deposit date: | 2005-09-28 | Release date: | 2005-11-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution. Acta Crystallogr.,Sect.D, 61, 2005
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1R2J
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![BU of 1r2j by Molmil](/molmil-images/mine/1r2j) | FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, protein FkbI | Authors: | Watanabe, K, Khosla, C, Stroud, R.M, Tsai, S.-C. | Deposit date: | 2003-09-28 | Release date: | 2003-11-25 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of an Acyl-ACP Dehydrogenase from the FK520 Polyketide Biosynthetic Pathway: Insights into Extender Unit Biosynthesis J.Mol.Biol., 334, 2003
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2E1F
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![BU of 2e1f by Molmil](/molmil-images/mine/2e1f) | Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN | Descriptor: | CHLORIDE ION, Werner syndrome ATP-dependent helicase | Authors: | Kitano, K, Yoshihara, N, Hakoshima, T. | Deposit date: | 2006-10-25 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of the HRDC domain of human Werner syndrome protein, WRN J.Biol.Chem., 282, 2007
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2E1E
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![BU of 2e1e by Molmil](/molmil-images/mine/2e1e) | Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN | Descriptor: | CHLORIDE ION, Werner syndrome ATP-dependent helicase | Authors: | Kitano, K, Yoshihara, N, Hakoshima, T. | Deposit date: | 2006-10-25 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of the HRDC domain of human Werner syndrome protein, WRN J.Biol.Chem., 282, 2007
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1V6A
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![BU of 1v6a by Molmil](/molmil-images/mine/1v6a) | |
1TZQ
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![BU of 1tzq by Molmil](/molmil-images/mine/1tzq) | Crystal structure of the equinatoxin II 8-69 double cysteine mutant | Descriptor: | Equinatoxin II | Authors: | Kristan, K, Podlesek, Z, Hojnik, V, Gutirrez-Aguirre, I, Guncar, G, Turk, D.A, Gonzalez-Maas, J.M, Lakey, J.H, Anderluh, G. | Deposit date: | 2004-07-11 | Release date: | 2004-09-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Pore formation by equinatoxin, a eukaryotic pore-forming toxin, requires a flexible N-terminal region and a stable beta-sandwich J.Biol.Chem., 279, 2004
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1V9F
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![BU of 1v9f by Molmil](/molmil-images/mine/1v9f) | Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli | Descriptor: | PHOSPHATE ION, Ribosomal large subunit pseudouridine synthase D | Authors: | Mizutani, K, Machida, Y, Unzai, S, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2004-01-26 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli Biochemistry, 43, 2004
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1UOK
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![BU of 1uok by Molmil](/molmil-images/mine/1uok) | CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE | Descriptor: | OLIGO-1,6-GLUCOSIDASE | Authors: | Watanabe, K, Hata, Y, Kizaki, H, Katsube, Y, Suzuki, Y. | Deposit date: | 1998-07-28 | Release date: | 1999-02-16 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization. J.Mol.Biol., 269, 1997
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2Z3P
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![BU of 2z3p by Molmil](/molmil-images/mine/2z3p) | |
2Z3O
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3VUP
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![BU of 3vup by Molmil](/molmil-images/mine/3vup) | Beta-1,4-mannanase from the common sea hare Aplysia kurodai | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-1,4-mannanase, SULFATE ION | Authors: | Mizutani, K, Tsuchiya, S, Toyoda, M, Nanbu, Y, Tominaga, K, Yuasa, K, Takahashi, N, Tsuji, A, Mikami, B. | Deposit date: | 2012-07-04 | Release date: | 2012-10-17 | Method: | X-RAY DIFFRACTION (1.05 Å) | Cite: | Structure of beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 A resolution. Acta Crystallogr.,Sect.F, 68, 2012
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2Z3N
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![BU of 2z3n by Molmil](/molmil-images/mine/2z3n) | complex structure of LF-transferase and peptide B | Descriptor: | D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY) | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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2Z3K
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![BU of 2z3k by Molmil](/molmil-images/mine/2z3k) | complex structure of LF-transferase and rAF | Descriptor: | 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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2Z3M
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![BU of 2z3m by Molmil](/molmil-images/mine/2z3m) | complex structure of LF-transferase and dAF | Descriptor: | (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ... | Authors: | Watanabe, K, Toh, Y, Tomita, K. | Deposit date: | 2007-06-04 | Release date: | 2007-10-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase Nature, 449, 2007
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