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8UPA
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BU of 8upa by Molmil
Structure of gp130 in complex with a de novo designed IL-6 mimetic
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, De novo designed IL-6 mimetic, Interleukin-6 receptor subunit beta, ...
Authors:Borowska, M.T, Jude, K.M, Garcia, K.C.
Deposit date:2023-10-22
Release date:2024-08-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:De novo design of miniprotein antagonists of cytokine storm inducers.
Nat Commun, 15, 2024
7VVV
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BU of 7vvv by Molmil
Crystal structure of MmtN
Descriptor: PHOSPHATE ION, SAM-dependent methyltransferase
Authors:Peng, M, Li, C.Y.
Deposit date:2021-11-09
Release date:2022-04-20
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Insights into methionine S-methylation in diverse organisms.
Nat Commun, 13, 2022
7VVX
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BU of 7vvx by Molmil
MmtN-SAH-Met complex
Descriptor: METHIONINE, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Zhang, Y.Z, Peng, M, Li, C.Y.
Deposit date:2021-11-09
Release date:2022-04-20
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Insights into methionine S-methylation in diverse organisms.
Nat Commun, 13, 2022
7VVW
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BU of 7vvw by Molmil
MmtN-SAM complex
Descriptor: GLYCEROL, PHOSPHATE ION, S-ADENOSYLMETHIONINE, ...
Authors:Zhang, Y.Z, Peng, M, Li, C.Y.
Deposit date:2021-11-09
Release date:2022-04-20
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Insights into methionine S-methylation in diverse organisms.
Nat Commun, 13, 2022
5D8T
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BU of 5d8t by Molmil
RNA octamer containing (S)-5' methyl, 2'-F U.
Descriptor: COBALT HEXAMMINE(III), RNA oligonucleotide containing (S)-C5'-Me-2'-FU
Authors:Harp, J.M, Egli, M.
Deposit date:2015-08-17
Release date:2016-06-29
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Basis of Duplex Thermodynamic Stability and Enhanced Nuclease Resistance of 5'-C-Methyl Pyrimidine-Modified Oligonucleotides.
J.Org.Chem., 81, 2016
3JXB
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BU of 3jxb by Molmil
Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C
Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2
Authors:Watkins, D, Koudelka, G.B, Williams, L.D.
Deposit date:2009-09-18
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Sequence Recognition of DNA by Protein-Induced Conformational Transitions
J.Mol.Biol., 396, 2010
5IKK
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BU of 5ikk by Molmil
Structure of the histone deacetylase Clr3
Descriptor: 1,2-ETHANEDIOL, Histone deacetylase clr3, MAGNESIUM ION, ...
Authors:Brugger, C, Schalch, T.
Deposit date:2016-03-03
Release date:2016-04-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SHREC Silences Heterochromatin via Distinct Remodeling and Deacetylation Modules.
Mol.Cell, 62, 2016
4FPD
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BU of 4fpd by Molmil
Deprotonation of D96 in bacteriorhodopsin opens the proton uptake pathway
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, CHLORIDE ION, ...
Authors:Wang, T, Sessions, A.O, Lunde, C.S, Rouani, S, Glaeser, R.M, Facciotti, M.T, Duan, Y.
Deposit date:2012-06-22
Release date:2013-02-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Deprotonation of d96 in bacteriorhodopsin opens the proton uptake pathway.
Structure, 21, 2013
7XWX
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BU of 7xwx by Molmil
Crystal structure of SARS-CoV-2 N-CTD
Descriptor: Nucleoprotein, PHOSPHATE ION
Authors:Luan, X.D, Li, X.M, Li, Y.F.
Deposit date:2022-05-27
Release date:2023-02-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Antiviral drug design based on structural insights into the N-terminal domain and C-terminal domain of the SARS-CoV-2 nucleocapsid protein.
Sci Bull (Beijing), 67, 2022
7XWZ
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BU of 7xwz by Molmil
Crystal structure of SARS-CoV-2 N-NTD and dsRNA complex
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Nucleoprotein, ...
Authors:Luan, X.D, Li, X.M, Li, Y.F.
Deposit date:2022-05-27
Release date:2023-02-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Antiviral drug design based on structural insights into the N-terminal domain and C-terminal domain of the SARS-CoV-2 nucleocapsid protein.
Sci Bull (Beijing), 67, 2022
7XX1
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BU of 7xx1 by Molmil
Crystal structure of SARS-CoV-2 N-NTD
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Nucleoprotein, ZINC ION
Authors:Luan, X.D, Li, X.M, Li, Y.F.
Deposit date:2022-05-27
Release date:2023-02-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Antiviral drug design based on structural insights into the N-terminal domain and C-terminal domain of the SARS-CoV-2 nucleocapsid protein.
Sci Bull (Beijing), 67, 2022
3JXD
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BU of 3jxd by Molmil
Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+
Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', RUBIDIUM ION, Repressor protein C2
Authors:Watkins, D, Koudelka, G.B, Williams, L.D.
Deposit date:2009-09-18
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Sequence Recognition of DNA by Protein-Induced Conformational Transitions.
J.Mol.Biol., 396, 2010
7E0W
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BU of 7e0w by Molmil
Crystal Structure of BCH domain from S. pombe
Descriptor: Putative Rho GTPase-activating protein C1565.02c, TETRAETHYLENE GLYCOL
Authors:Chichili, V.P.R, Jobichen, C, Sivaraman, J.
Deposit date:2021-01-28
Release date:2021-03-31
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A novel intertwined anti-parallel dimeric structure of scaffold BCH domain regulates RhoA and RhoGAP functions
Proc.Natl.Acad.Sci.USA, 2021
5IQY
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BU of 5iqy by Molmil
Structure of apo-Dehydroascorbate Reductase from Pennisetum Glaucum phased by Iodide-SAD method
Descriptor: Dehydroascorbate reductase, IODIDE ION
Authors:Das, B.K, Kumar, A, Manidola, P, Arockiasamy, A.
Deposit date:2016-03-11
Release date:2016-05-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Non-native ligands define the active site of Pennisetum glaucum (L.) R. Br dehydroascorbate reductase
Biochem.Biophys.Res.Commun., 473, 2016
3JXC
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BU of 3jxc by Molmil
Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+
Descriptor: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2, THALLIUM (I) ION
Authors:Watkins, D, Koudelka, G.B, Williams, L.D.
Deposit date:2009-09-18
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Sequence Recognition of DNA by Protein-Induced Conformational Transitions.
J.Mol.Biol., 396, 2010
8RJX
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BU of 8rjx by Molmil
Solution structure of osmoregulator OsmY from E. coli.
Descriptor: Osmotically-inducible protein Y
Authors:Iyer, A, Luo, Y, le Paige, U.B.A, van Ingen, H.
Deposit date:2023-12-22
Release date:2024-07-03
Last modified:2024-07-17
Method:SOLUTION NMR
Cite:The Structure and Function of the Bacterial Osmotically Inducible Protein Y.
J.Mol.Biol., 436, 2024
3KK1
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BU of 3kk1 by Molmil
HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site
Descriptor: 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3', MAGNESIUM ION, ...
Authors:Lansdon, E.B.
Deposit date:2009-11-04
Release date:2010-03-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex.
J.Mol.Biol., 397, 2010
8OV5
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BU of 8ov5 by Molmil
PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE, 100K
Descriptor: CHLOROPHYLL A, PERIDININ, Peridinin-chlorophyll a-binding protein 1, ...
Authors:Hofmann, E, Johanning, S.
Deposit date:2023-04-25
Release date:2024-05-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural and spectroscopic characterization of the peridinin-chlorophyll a-protein (PCP) complex from Heterocapsa pygmaea (HPPCP).
Biochim Biophys Acta Bioenerg, 1866, 2024
1IJC
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BU of 1ijc by Molmil
Solution Structure of Bucandin, a Neurotoxin from the Venom of the Malayan Krait
Descriptor: bucandin
Authors:Torres, A.M, Kini, R.M, Nirthanan, S, Kuchel, P.W.
Deposit date:2001-04-25
Release date:2001-12-21
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:NMR structure of bucandin, a neurotoxin from the venom of the Malayan krait (Bungarus candidus).
Biochem.J., 360, 2001
7N21
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BU of 7n21 by Molmil
NMR structure of AnIB-OH
Descriptor: Alpha-conotoxin AnIB
Authors:Conibear, A.C, Rosengren, K.J, Lee, H.S.
Deposit date:2021-05-28
Release date:2021-11-17
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Posttranslational modifications of alpha-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding.
Rsc Med Chem, 12, 2021
7N22
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BU of 7n22 by Molmil
NMR structure of AnIB[Y(SO3)16Y]-NH2
Descriptor: Alpha-conotoxin AnIB
Authors:Conibear, A.C, Rosengren, K.J, Lee, H.S.
Deposit date:2021-05-28
Release date:2021-11-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Posttranslational modifications of alpha-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding.
Rsc Med Chem, 12, 2021
7N23
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BU of 7n23 by Molmil
NMR structure of AnIB[Y(SO3)16Y]-OH
Descriptor: Alpha-conotoxin AnIB
Authors:Conibear, A.C, Rosengren, K.J, Lee, H.S.
Deposit date:2021-05-28
Release date:2021-11-10
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Posttranslational modifications of alpha-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding.
Rsc Med Chem, 12, 2021
7N0T
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BU of 7n0t by Molmil
NMR structure of EpI[Y(SO)315Y]-OH
Descriptor: Alpha-conotoxin EpI
Authors:Conibear, A.C, Rosengren, K.J, Lee, H.S.
Deposit date:2021-05-26
Release date:2021-11-10
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Posttranslational modifications of alpha-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding.
Rsc Med Chem, 12, 2021
7N20
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BU of 7n20 by Molmil
NMR structure of native AnIB
Descriptor: Alpha-conotoxin AnIB
Authors:Conibear, A.C, Rosengren, K.J, Lee, H.S.
Deposit date:2021-05-28
Release date:2021-11-17
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Posttranslational modifications of alpha-conotoxins: sulfotyrosine and C-terminal amidation stabilise structures and increase acetylcholine receptor binding.
Rsc Med Chem, 12, 2021
7W7F
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BU of 7w7f by Molmil
Cryo-EM structure of human NaV1.3/beta1/beta2-ICA121431
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2,2-diphenyl-~{N}-[4-(1,3-thiazol-2-ylsulfamoyl)phenyl]ethanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Jiang, D, Li, X.
Deposit date:2021-12-04
Release date:2022-04-06
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural basis for modulation of human Na V 1.3 by clinical drug and selective antagonist.
Nat Commun, 13, 2022

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PDB entries from 2024-11-06

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