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3VLV
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BU of 3vlv by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3VLW
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BU of 3vlw by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
Descriptor: AlgQ1, CALCIUM ION, GLYCEROL, ...
Authors:Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2011-12-05
Release date:2012-01-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
7E4S
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BU of 7e4s by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-dehydro-4-deoxy-D-glucuronate isomerase, ZINC ION
Authors:Yamamoto, Y, Takase, R, Mikami, B, Hashimoto, W.
Deposit date:2021-02-15
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs
J.Appl.Glyosci., 2023
7D20
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BU of 7d20 by Molmil
Cryo-EM structure of SET8-CENP-A-nucleosome complex
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Ho, C.-H, Takizawa, Y, Kobayashi, W, Arimura, Y, Kurumizaka, H.
Deposit date:2020-09-15
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase.
Life Sci Alliance, 4, 2021
7D1Z
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BU of 7d1z by Molmil
Cryo-EM structure of SET8-nucleosome complex
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Ho, C.-H, Takizawa, Y, Kobayashi, W, Arimura, Y, Kurumizaka, H.
Deposit date:2020-09-15
Release date:2021-02-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase.
Life Sci Alliance, 4, 2021
2OKX
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BU of 2okx by Molmil
Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A
Descriptor: CALCIUM ION, GLYCEROL, Rhamnosidase B
Authors:Cui, Z, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2007-01-17
Release date:2007-11-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1
J.Mol.Biol., 374, 2007
2P0M
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BU of 2p0m by Molmil
Revised structure of rabbit reticulocyte 15S-lipoxygenase
Descriptor: (2E)-3-(2-OCT-1-YN-1-YLPHENYL)ACRYLIC ACID, Arachidonate 15-lipoxygenase, FE (II) ION
Authors:Choi, J, Chon, J.K, Kim, S, Shin, W.
Deposit date:2007-02-28
Release date:2007-10-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational flexibility in mammalian 15S-lipoxygenase: Reinterpretation of the crystallographic data.
Proteins, 70, 2008
1RCK
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BU of 1rck by Molmil
THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor: RIBONUCLEASE F1
Authors:Nakai, T, Yoshikawa, W, Nakamura, H, Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
1RCL
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BU of 1rcl by Molmil
THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor: RIBONUCLEASE F1
Authors:Nakai, T, Yoshikawa, W, Nakamura, H, Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
1VAV
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BU of 1vav by Molmil
Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution
Descriptor: Alginate lyase PA1167
Authors:Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B.
Deposit date:2004-02-19
Release date:2004-05-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
J.Biol.Chem., 279, 2004
3VXD
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BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
Descriptor: Putative uncharacterized protein gbs1889, SULFATE ION
Authors:Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2012-09-11
Release date:2012-10-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
3VWO
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BU of 3vwo by Molmil
Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Peptidoglycan hydrolase FlgJ
Authors:Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2012-08-30
Release date:2013-09-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
To be Published
3WSC
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BU of 3wsc by Molmil
Crystal structure of alginate-binding protein Algp7
Descriptor: Alginate-binding protein
Authors:Temtrirath, K, Murata, K, Hashimoto, W.
Deposit date:2014-03-07
Release date:2015-02-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Structural insights into alginate binding by bacterial cell-surface protein
Carbohydr.Res., 404C, 2014
3WUX
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BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
Descriptor: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
Authors:Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2014-05-08
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published
3WL3
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BU of 3wl3 by Molmil
N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii
Descriptor: GLYCEROL, PHOSPHATE ION, Putative uncharacterized protein PH0499, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
Deposit date:2013-11-07
Release date:2014-05-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
3WIW
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BU of 3wiw by Molmil
Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88
Authors:Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2013-09-26
Release date:2014-01-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.
J.Biol.Chem., 289, 2014
3WL4
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BU of 3wl4 by Molmil
N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus
Descriptor: CADMIUM ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Nakamura, T, Niiyama, M, Hashimoto, W, Uegaki, K.
Deposit date:2013-11-07
Release date:2014-05-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
5XS8
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BU of 5xs8 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
Authors:Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2017-06-12
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
5Y4C
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BU of 5y4c by Molmil
Crystal structure of EfeO-like protein Algp7 in complex with a metal ion
Descriptor: Alginate-binding protein, COPPER (II) ION, GLYCEROL
Authors:Temtrirath, K, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2017-08-03
Release date:2017-10-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Binding mode of metal ions to the bacterial iron import protein EfeO
Biochem. Biophys. Res. Commun., 493, 2017
5Z6C
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BU of 5z6c by Molmil
Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
Descriptor: Putative ABC transporter substrate-binding protein YesO
Authors:Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2018-01-22
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
To Be Published
6A6U
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BU of 6a6u by Molmil
Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans with R61G mutation, in complex with FSA
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
Deposit date:2018-06-29
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.945 Å)
Cite:Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
6A6T
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BU of 6a6t by Molmil
Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans with R61G mutation
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl amine: oxygen oxidoreductase, ...
Authors:Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
Deposit date:2018-06-29
Release date:2019-05-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
6A6V
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BU of 6a6v by Molmil
Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans with 7 additional mutations, in complex with FSA
Descriptor: 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl amine: oxygen oxidoreductase
Authors:Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
Deposit date:2018-06-29
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
5Z6B
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BU of 5z6b by Molmil
Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
Descriptor: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO
Authors:Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
Deposit date:2018-01-22
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
6A6R
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BU of 6a6r by Molmil
Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans, Seleno-methionine Derivative
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl amine: oxygen oxidoreductase, ...
Authors:Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
Deposit date:2018-06-29
Release date:2019-05-15
Method:X-RAY DIFFRACTION (2.609 Å)
Cite:Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019

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