4V4O
| Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... | Authors: | Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S. | Deposit date: | 2004-05-23 | Release date: | 2014-07-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity STRUCTURE, 12, 2004
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1D2M
| UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME | Descriptor: | EXCINUCLEASE ABC SUBUNIT B, SULFATE ION, octyl beta-D-glucopyranoside | Authors: | Nakagawa, N, Sugahara, M, Masui, R, Kato, R, Fukuyama, K, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 1999-09-25 | Release date: | 2000-03-22 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair. J.Biochem.(Tokyo), 126, 1999
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1WYT
| Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form | Descriptor: | glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein) | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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1WIY
| Crystal Structure Analysis of a 6-coordinated Cytochorome P450 from Thermus thermophilus HB8 | Descriptor: | Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kousumi, Y, Nakagawa, N, Kaneko, M, Yamamoto, H, Masui, R, Kuramitsu, S, Ueyama, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2004-11-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure Analysis of Cytochrome P450 from Thermus thermophilus HB8 To be Published
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1WKK
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1WKL
| Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with ATP and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Takeishi, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-06-01 | Release date: | 2005-08-23 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 To be Published
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5H45
| Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms | Descriptor: | DNA repair protein RadA | Authors: | Inoue, M, Fukui, K, Fujii, Y, Nakagawa, N, Yano, T, Kuramitsu, S, Masui, R. | Deposit date: | 2016-10-30 | Release date: | 2017-05-03 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair. J. Biol. Chem., 292, 2017
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1ONL
| Crystal structure of Thermus thermophilus HB8 H-protein of the glycine cleavage system | Descriptor: | glycine cleavage system H protein | Authors: | Nakai, T, Ishijima, J, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2003-02-28 | Release date: | 2003-08-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method. Acta Crystallogr.,Sect.D, 59, 2003
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3CM0
| Crystal structure of adenylate kinase from Thermus thermophilus HB8 | Descriptor: | Adenylate kinase | Authors: | Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2008-03-20 | Release date: | 2008-09-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of adenylate kinase from Thermus thermophilus HB8 To be Published
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7CKJ
| Crystal structure of CMP kinase in complex with CMP from Thermus thermophilus HB8 | Descriptor: | CYTIDINE-5'-MONOPHOSPHATE, Cytidylate kinase | Authors: | Mega, R, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2020-07-17 | Release date: | 2020-07-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor. PLoS ONE, 15, 2020
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1IR6
| Crystal structure of exonuclease RecJ bound to manganese | Descriptor: | MANGANESE (II) ION, exonuclease RecJ | Authors: | Yamagata, A, Kakuta, Y, Masui, R, Fukuyama, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2001-09-11 | Release date: | 2002-05-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity. Proc.Natl.Acad.Sci.USA, 99, 2002
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5YTQ
| Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8 | Descriptor: | LANTHANUM (III) ION, TTHA0139 | Authors: | Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R. | Deposit date: | 2017-11-19 | Release date: | 2018-11-21 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.393 Å) | Cite: | Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8 To Be Published
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5YTP
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2GGS
| crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii | Descriptor: | 273aa long hypothetical dTDP-4-dehydrorhamnose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Rajakannan, V, Mizushima, T, Suzuki, A, Masui, R, Kuramitsu, S, Yamane, T. | Deposit date: | 2006-03-24 | Release date: | 2007-03-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii To be published
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7ED9
| Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase | Authors: | Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R. | Deposit date: | 2021-03-15 | Release date: | 2022-03-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.01764154 Å) | Cite: | Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8. J.Struct.Biol., 214, 2022
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7ED6
| Crystal structure of Thermus thermophilus FakA ATP-binding domain | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase | Authors: | Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R. | Deposit date: | 2021-03-15 | Release date: | 2022-03-16 | Last modified: | 2023-01-11 | Method: | X-RAY DIFFRACTION (1.92850327 Å) | Cite: | Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8. J.Struct.Biol., 214, 2022
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1IQR
| Crystal structure of DNA photolyase from Thermus thermophilus | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase | Authors: | Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2001-07-27 | Release date: | 2001-11-28 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA, 98, 2001
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1IQU
| Crystal structure of photolyase-thymine complex | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, THYMINE, ... | Authors: | Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2001-08-03 | Release date: | 2002-05-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA, 98, 2001
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1WUQ
| Structure of GTP cyclohydrolase I Complexed with 8-oxo-GTP | Descriptor: | 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | Authors: | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-12-08 | Release date: | 2005-07-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative J.Biochem.(Tokyo), 138, 2005
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1WYV
| Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form | Descriptor: | (AMINOOXY)ACETIC ACID, PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, ... | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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1WKJ
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1WUR
| Structure of GTP cyclohydrolase I Complexed with 8-oxo-dGTP | Descriptor: | 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase I, ZINC ION | Authors: | Tanaka, Y, Nakagawa, N, Masui, R, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-12-08 | Release date: | 2005-07-19 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative J.Biochem.(Tokyo), 138, 2005
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1WYU
| Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein) | Authors: | Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-17 | Release date: | 2005-04-05 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Embo J., 24, 2005
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3HJE
| Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase | Descriptor: | 704aa long hypothetical glycosyltransferase, GLYCEROL | Authors: | Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T. | Deposit date: | 2009-05-21 | Release date: | 2010-04-14 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii Acta Crystallogr.,Sect.F, 66, 2010
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3IEM
| Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog | Descriptor: | CITRATE ANION, RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3'), Ribonuclease TTHA0252, ... | Authors: | Ishikawa, H, Nakagawa, N, Kuramitus, S, Yokoyama, S, Masui, R. | Deposit date: | 2009-07-23 | Release date: | 2010-07-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog To be Published
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