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1OD6
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BU of 1od6 by Molmil
The Crystal Structure of Phosphopantetheine adenylyltransferase from Thermus Thermophilus in complex with 4'-phosphopantetheine
Descriptor: 4'-PHOSPHOPANTETHEINE, PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE, SULFATE ION
Authors:Takahashi, H, Inagaki, E, Miyano, M, Tahirov, T.H.
Deposit date:2003-02-13
Release date:2003-03-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and Implications for the Thermal Stability of Phosphopantetheine Adenylyltransferase from Thermus Thermophilus.
Acta Crystallogr.,Sect.D, 60, 2004
5T00
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BU of 5t00 by Molmil
Human CTCF ZnF3-7 and methylated DNA complex
Descriptor: DNA (5'-GCCAGCAGGGGG(5CM)GCTA-3'), DNA (5'-TAG(5CM)GCCCCCTGCTGGC-3'), Transcriptional repressor CTCF, ...
Authors:Hashimoto, H, Wang, D, Cheng, X.
Deposit date:2016-08-15
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA.
Mol. Cell, 66, 2017
3IE2
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BU of 3ie2 by Molmil
Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3IDZ
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BU of 3idz by Molmil
Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
To be Published
1J1T
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BU of 1j1t by Molmil
Alginate lyase from Alteromonas sp.272
Descriptor: Alginate Lyase, CALCIUM ION, SULFATE ION
Authors:Motoshima, H, Iwatomo, Y, Watanabe, K, Oda, T, Muramatsu, T.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Alginate Lyase from Alteromonas sp.272
To be published
4EW0
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BU of 4ew0 by Molmil
mouse MBD4 glycosylase domain in complex with a G:5hmU (5-hydroxymethyluracil) mismatch
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*TP*GP*(5HU)P*GP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'), ...
Authors:Hashimoto, H, Zhang, X, Cheng, X.
Deposit date:2012-04-26
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
Nucleic Acids Res., 40, 2012
4EVV
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BU of 4evv by Molmil
mouse MBD4 glycosylase domain in complex with a G:T mismatch
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*TP*GP*TP*GP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'), ...
Authors:Hashimoto, H, Zhang, X, Cheng, X.
Deposit date:2012-04-26
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
Nucleic Acids Res., 40, 2012
3WHO
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BU of 3who by Molmil
X-ray-Crystallographic Structure of an RNase Po1 Exhibiting Anti-tumor Activity
Descriptor: Guanyl-specific ribonuclease Po1
Authors:Kobayashi, H, Katsurtani, T, Hara, Y, Motoyoshi, N, Itagaki, T, Akita, F, Higashiura, A, Yamada, Y, Suzuki, M, Inokuchi, N.
Deposit date:2013-08-30
Release date:2014-07-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray crystallographic structure of RNase Po1 that exhibits anti-tumor activity.
Biol.Pharm.Bull., 37, 2014
4EW4
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BU of 4ew4 by Molmil
mouse MBD4 glycosylase domain in complex with DNA containing a ribose sugar
Descriptor: DNA (5'-D(*CP*CP*AP*TP*GP*(3DR)P*GP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4, ...
Authors:Hashimoto, H, Zhang, X, Cheng, X.
Deposit date:2012-04-26
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.791 Å)
Cite:Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
Nucleic Acids Res., 40, 2012
6LGP
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BU of 6lgp by Molmil
cryo-EM structure of TRPV3 in lipid nanodisc
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, DIUNDECYL PHOSPHATIDYL CHOLINE, Transient receptor potential cation channel subfamily V member 3
Authors:Shimada, H, Kusakizako, T, Nishizawa, T, Nureki, O.
Deposit date:2019-12-05
Release date:2020-06-24
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The structure of lipid nanodisc-reconstituted TRPV3 reveals the gating mechanism.
Nat.Struct.Mol.Biol., 27, 2020
4LT5
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BU of 4lt5 by Molmil
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Descriptor: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ...
Authors:Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X.
Deposit date:2013-07-23
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
Nature, 506, 2014
4JGC
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BU of 4jgc by Molmil
Human TDG N140A mutant IN A COMPLEX WITH 5-carboxylcytosine (5caC)
Descriptor: 4-amino-2-oxo-1,2-dihydropyrimidine-5-carboxylic acid, G/T mismatch-specific thymine DNA glycosylase, oligonucleotide, ...
Authors:Hashimoto, H, Zhang, X, Cheng, X.
Deposit date:2013-02-28
Release date:2013-05-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.582 Å)
Cite:Activity and crystal structure of human thymine DNA glycosylase mutant N140A with 5-carboxylcytosine DNA at low pH.
Dna Repair, 12, 2013
5Z06
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BU of 5z06 by Molmil
Crystal structure of beta-1,2-glucanase from Parabacteroides distasonis
Descriptor: BDI_3064 protein, CALCIUM ION, GLYCEROL
Authors:Shimizu, H, Nakajima, M, Miyanaga, A, Takahashi, Y, Tanaka, N, Kobayashi, K, Sugimoto, N, Nakai, H, Taguchi, H.
Deposit date:2017-12-18
Release date:2018-05-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
Biochemistry, 57, 2018
4FNC
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BU of 4fnc by Molmil
Human TDG in a post-reactive complex with 5-hydroxymethyluracil (5hmU)
Descriptor: 5-HYDROXYMETHYL URACIL, DNA (28-MER), DNA (29-MER), ...
Authors:Hashimoto, H, Hong, S, Bhagwat, A.S, Zhang, X, Cheng, X.
Deposit date:2012-06-19
Release date:2012-09-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.493 Å)
Cite:Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
Nucleic Acids Res., 40, 2012
3SWR
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BU of 3swr by Molmil
Structure of human DNMT1 (601-1600) in complex with Sinefungin
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (cytosine-5)-methyltransferase 1, ...
Authors:Hashimoto, H, Cheng, X.
Deposit date:2011-07-14
Release date:2011-08-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of human DNMT1 (residues 600-1600) in complex with Sinefungin
To be Published
3VSL
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BU of 3vsl by Molmil
Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the cefotaxime bound form.
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Yoshida, H, Tame, J.R, Park, S.Y.
Deposit date:2012-04-25
Release date:2012-10-31
Last modified:2017-03-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structures of Penicillin-Binding Protein 3 (PBP3) from Methicillin-Resistant Staphylococcus aureus in the Apo and Cefotaxime-Bound Forms.
J.Mol.Biol., 423, 2012
3WXR
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BU of 3wxr by Molmil
Yeast 20S proteasome with a mutation of alpha7 subunit
Descriptor: Probable proteasome subunit alpha type-7, Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, ...
Authors:Yashiroda, H, Toda, Y, Otsu, S, Takagi, K, Mizushima, T, Murata, S.
Deposit date:2014-08-06
Release date:2014-10-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:N-terminal alpha 7 deletion of the proteasome 20S core particle substitutes for yeast PI31 function
Mol.Cell.Biol., 35, 2015
3WV6
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BU of 3wv6 by Molmil
Crystal Structure of a protease-resistant mutant form of human galectin-9
Descriptor: 1,2-ETHANEDIOL, Galectin-9, ZINC ION, ...
Authors:Yoshida, H, Kamitori, S.
Deposit date:2014-05-16
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-9 having two carbohydrate recognition domains with a metal-binding site
Biochem.Biophys.Res.Commun., 490, 2017
6CPJ
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BU of 6cpj by Molmil
Solution structure of SH3 domain from Shank2
Descriptor: SH3 and multiple ankyrin repeat domains protein 2
Authors:Ishida, H, Vogel, H.J.
Deposit date:2018-03-13
Release date:2018-08-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structures of the SH3 domains from Shank scaffold proteins and their interactions with Cav1.3 calcium channels.
FEBS Lett., 592, 2018
6CPI
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BU of 6cpi by Molmil
Solution structure of SH3 domain from Shank1
Descriptor: SH3 and multiple ankyrin repeat domains protein 1
Authors:Ishida, H, Vogel, H.J.
Deposit date:2018-03-13
Release date:2018-08-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structures of the SH3 domains from Shank scaffold proteins and their interactions with Cav1.3 calcium channels.
FEBS Lett., 592, 2018
6CPK
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BU of 6cpk by Molmil
Solution structure of SH3 domain from Shank3
Descriptor: SH3 and multiple ankyrin repeat domains protein 3
Authors:Ishida, H, Vogel, H.J.
Deposit date:2018-03-13
Release date:2018-08-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structures of the SH3 domains from Shank scaffold proteins and their interactions with Cav1.3 calcium channels.
FEBS Lett., 592, 2018
5XAX
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BU of 5xax by Molmil
Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta4 subunit explain its role in cell-cell adhesion
Descriptor: GLYCEROL, Sodium channel subunit beta-4
Authors:Shimizu, H, Yokoyama, S.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.903 Å)
Cite:Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
5XAW
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BU of 5xaw by Molmil
Parallel homodimer structures of voltage-gated sodium channel beta4 for cell-cell adhesion
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, GLYCEROL, Sodium channel subunit beta-4, ...
Authors:Shimizu, H, Yokoyama, S.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Parallel homodimer structures of the extracellular domains of the voltage-gated sodium channel beta 4 subunit explain its role in cell-cell adhesion
J. Biol. Chem., 292, 2017
2K3S
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BU of 2k3s by Molmil
HADDOCK-derived structure of the CH-domain of the smoothelin-like 1 complexed with the C-domain of apocalmodulin
Descriptor: Calmodulin, Smoothelin-like protein 1
Authors:Ishida, H, Borman, M.A, Ostrander, J, Vogel, H.J, MacDonald, J.A.
Deposit date:2008-05-15
Release date:2008-05-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the calponin homology (CH) domain from the smoothelin-like 1 protein: a unique apocalmodulin-binding mode and the possible role of the C-terminal type-2 CH-domain in smooth muscle relaxation.
J.Biol.Chem., 283, 2008
2JV9
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BU of 2jv9 by Molmil
The Solution Structure of Calponin Homology Domain from Smoothelin-like 1
Descriptor: Smoothelin-like 1
Authors:Ishida, H, Vogel, H.J, MacDonald, J.A.
Deposit date:2007-09-12
Release date:2008-05-27
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the Calponin Homology (CH) Domain from the Smoothelin-like 1 Protein: A UNIQUE APOCALMODULIN-BINDING MODE AND THE POSSIBLE ROLE OF THE C-TERMINAL TYPE-2 CH-DOMAIN IN SMOOTH MUSCLE RELAXATION.
J.Biol.Chem., 283, 2008

222036

數據於2024-07-03公開中

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