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6IZY
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BU of 6izy by Molmil
The RNA-dependent RNA polymerase domain of dengue 2 NS5
Descriptor: COBALT (II) ION, Genome polyprotein, ZINC ION
Authors:Shimizu, H, Sekine, S.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
6IZX
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BU of 6izx by Molmil
The RNA-dependent RNA polymerase domain of dengue 2 NS5, bound with RK-0404678
Descriptor: 2-oxo-2H-1,3-benzoxathiol-5-yl acetate, COBALT (II) ION, Genome polyprotein, ...
Authors:Shimizu, H, Sekine, S.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
2RSD
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BU of 2rsd by Molmil
Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice
Descriptor: E3 SUMO-protein ligase SIZ1, ZINC ION
Authors:Shindo, H, Tsuchiya, W, Suzuki, R, Yamazaki, T.
Deposit date:2012-01-12
Release date:2012-08-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2
Febs Lett., 586, 2012
6A2U
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BU of 6a2u by Molmil
Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase
Descriptor: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Glucose dehydrogenase, ...
Authors:Yoshida, H, Kojima, K, Yoshimatsu, K, Shiota, M, Yamazaki, T, Ferri, S, Tsugawa, W, Kamitori, S, Sode, K.
Deposit date:2018-06-13
Release date:2019-06-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein.
Acta Crystallogr D Struct Biol, 75, 2019
1NDH
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BU of 1ndh by Molmil
CRYSTAL STRUCTURE OF NADH-CYTOCHROME B5 REDUCTASE FROM PIG LIVER AT 2.4 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME B5 REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nishida, H, Miki, K.
Deposit date:1994-10-31
Release date:1995-02-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-cytochrome b5 reductase from pig liver at 2.4 A resolution.
Biochemistry, 34, 1995
4OO8
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BU of 4oo8 by Molmil
Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*CP*CP*AP*GP*CP*CP*AP*AP*GP*CP*GP*CP*AP*CP*CP*TP*AP*AP*TP*TP*TP*CP*C)-3'), RNA (97-MER)
Authors:Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2014-01-31
Release date:2014-02-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Cas9 in complex with guide RNA and target DNA
Cell(Cambridge,Mass.), 156, 2014
5ZLN
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BU of 5zln by Molmil
Crystal structure of mouse TLR9 in complex with two DNAs (CpG DNA and TCGCCA DNA)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3'), ...
Authors:Ishida, H, Ohto, U, Shimizu, T.
Deposit date:2018-03-28
Release date:2018-04-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for species-specific activation of mouse Toll-like receptor 9
FEBS Lett., 592, 2018
3WDR
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BU of 3wdr by Molmil
Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus complexed with gluco-manno-oligosaccharide
Descriptor: BICARBONATE ION, Beta-mannanase, MAGNESIUM ION, ...
Authors:Tsukagoshi, H, Ishida, T, Touhara, K.K, Igarashi, K, Samejima, M, Fushinobu, S, Kitamoto, K, Arioka, M.
Deposit date:2013-06-20
Release date:2014-03-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014
3WDQ
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BU of 3wdq by Molmil
Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-mannanase, MAGNESIUM ION, ...
Authors:Tsukagoshi, H, Ishida, T, Touhara, K.K, Igarashi, K, Samejima, M, Fushinobu, S, Kitamoto, K, Arioka, M.
Deposit date:2013-06-20
Release date:2014-03-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014
8HN3
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BU of 8hn3 by Molmil
Soluble domain of cytochrome c-556 from Chlorobaculum tepidum
Descriptor: ACETATE ION, Cytochrome c-556, GLYCEROL, ...
Authors:Kishimoto, H, Azai, C, Yamamoto, T, Mutoh, R, Nakaniwa, T, Tanaka, H, Kurisu, G, Oh-oka, H.
Deposit date:2022-12-07
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.
Curr Res Struct Biol, 5, 2023
8HN2
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BU of 8hn2 by Molmil
Selenomethionine-labelled soluble domain of Rieske iron-sulfur protein from chlorobaculum tepidum
Descriptor: Cytochrome b6-f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER
Authors:Kishimoto, H, Mutoh, R, Tanaka, H, Kurisu, G, Oh-oka, H.
Deposit date:2022-12-07
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.
Curr Res Struct Biol, 5, 2023
4FQZ
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BU of 4fqz by Molmil
Crystal structure of a protease-resistant mutant form of human galectin-8
Descriptor: 1,2-ETHANEDIOL, Galectin-8, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Yoshida, H, Kamitori, S.
Deposit date:2012-06-26
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
1DJ6
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BU of 1dj6 by Molmil
COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE
Descriptor: 5'-D(*CP*GP*CP*GP*CP*G)-3', MAGNESIUM ION, N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE
Authors:Ohishi, H, Tomita, K.-i, Nakanishi, I, Ohtsuchi, M, Hakoshima, T, Rich, A.
Deposit date:1999-12-01
Release date:1999-12-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:The crystal structure of N1-[2-(2-amino-ethylamino)-ethyl]-ethane-1,2-diamine (polyamines) binding to the minor groove of d(CGCGCG)2, hexamer at room temperature
FEBS Lett., 523, 2002
1OI7
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BU of 1oi7 by Molmil
The Crystal Structure of Succinyl-CoA synthetase alpha subunit from Thermus Thermophilus
Descriptor: SUCCINYL-COA SYNTHETASE ALPHA CHAIN
Authors:Takahashi, H, Tokunaga, Y, Kuroishi, C, Babayeva, N, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H.
Deposit date:2003-06-10
Release date:2003-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:The Crystal Structure of Succinyl-Coa Synthetase from Thermus Thermophilus
To be Published
1D1H
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BU of 1d1h by Molmil
SOLUTION STRUCTURE OF HANATOXIN 1
Descriptor: HANATOXIN TYPE 1
Authors:Takahashi, H, Kim, J.I, Sato, K, Swartz, K.J, Shimada, I.
Deposit date:1999-09-16
Release date:2000-09-20
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of hanatoxin1, a gating modifier of voltage-dependent K(+) channels: common surface features of gating modifier toxins.
J.Mol.Biol., 297, 2000
7VSG
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BU of 7vsg by Molmil
Cryo-EM structure of a human ATP11C-CDC50A flippase reconstituted in the Nanodisc in PtdSer-occluded E2-Pi state.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cell cycle control protein 50A, O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine, ...
Authors:Nakanishii, H, Abe, K.
Deposit date:2021-10-26
Release date:2021-12-29
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM of the ATP11C flippase reconstituted in Nanodiscs shows a distended phospholipid bilayer inner membrane around transmembrane helix 2.
J.Biol.Chem., 298, 2022
7VSH
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BU of 7vsh by Molmil
Cryo-EM structure of a human ATP11C-CDC50A flippase reconstituted in the Nanodisc in E1P state.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cell cycle control protein 50A, MAGNESIUM ION, ...
Authors:Nakanishii, H, Abe, K.
Deposit date:2021-10-26
Release date:2021-12-29
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM of the ATP11C flippase reconstituted in Nanodiscs shows a distended phospholipid bilayer inner membrane around transmembrane helix 2.
J.Biol.Chem., 298, 2022
5GY6
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BU of 5gy6 by Molmil
Ribonuclease from Hericium erinaceus (RNase He1)
Descriptor: Ribonuclease T1, ZINC ION
Authors:Kobayashi, H, Sangawa, T, Takebe, K, Itagaki, T, Motoyoshi, N, Suzuki, M.
Deposit date:2016-09-21
Release date:2017-09-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ribonuclease from Hericium erinaceus (RNase He1)
To Be Published
2IE1
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BU of 2ie1 by Molmil
Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE
Authors:Ohishi, H, Odoko, M, Tsukamoto, K, Hiyama, Y, Maezaki, N, Grzeskowiak, K, Ishida, T, Tanaka, T, Okabe, N, Fukuyama, K.
Deposit date:2006-09-16
Release date:2007-10-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography
To be Published
2L1W
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BU of 2l1w by Molmil
The solution structure of soybean calmodulin isoform 4 complexed with the vacuolar calcium ATPase BCA1 peptide
Descriptor: CALCIUM ION, Calmodulin, vacuolar calcium ATPase BCA1 peptide
Authors:Ishida, H, Vogel, H.J.
Deposit date:2010-08-06
Release date:2010-09-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution structure of a plant calmodulin and the CaM-binding domain of the vacuolar calcium-ATPase BCA1 reveals a new binding and activation mechanism
To be Published
3IEM
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BU of 3iem by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
Descriptor: CITRATE ANION, RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitus, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
To be Published
3IEK
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BU of 3iek by Molmil
Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-22
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
To be Published
3IEL
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BU of 3iel by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
To be Published
3IE1
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BU of 3ie1 by Molmil
Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
Descriptor: CITRATE ANION, RNA (5'-R(P*UP*UP*UP*U)-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
To be Published
3IE0
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BU of 3ie0 by Molmil
Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
To be Published

222036

數據於2024-07-03公開中

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