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3W96
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BU of 3w96 by Molmil
Crystal Structure of Human Nucleosome Core Particle lacking H2A N-terminal region
Descriptor: 146-mer DNA, CHLORIDE ION, Histone H2A type 1-B/E, ...
Authors:Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
1UAC
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BU of 1uac by Molmil
Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME
Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
Authors:Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
Deposit date:2003-03-08
Release date:2004-03-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.BIOL.CHEM., 278, 2003
4U4P
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BU of 4u4p by Molmil
Crystal structure of the human condensin SMC hinge domain heterodimer with short coiled coils
Descriptor: Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S, Kawahara, K, Hosokawa, Y, Fukakusa, S, Oki, H, Nakamura, S, Noda, M, Takino, R, Miyahara, Y, Maruno, T, Kobayashi, Y, Ohkubo, T, Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
5B56
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BU of 5b56 by Molmil
Crystal structure of HIV-1 VPR C-Terminal domain and DIBB-M-Importin-Alpha2 complex
Descriptor: Importin subunit alpha-1, Protein Vpr
Authors:Miyatake, H, Sanjoh, A, Matusda, G, Murakami, T, Murakami, H, Hagiwara, K, Yokoyama, M, Sato, H, Miyamoto, Y, Dohmae, N, Aida, Y.
Deposit date:2016-04-25
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular Mechanism of HIV-1 Vpr for Binding to Importin-alpha
J.Mol.Biol., 428, 2016
4XRE
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BU of 4xre by Molmil
Crystal structure of Gnk2 complexed with mannose
Descriptor: Antifungal protein ginkbilobin-2, alpha-D-mannopyranose
Authors:Miyakawa, T, Hatano, K, Miyauchi, Y, Suwa, Y, Sawano, Y, Tanokura, M.
Deposit date:2015-01-21
Release date:2015-02-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:A secreted protein with plant-specific cysteine-rich motif functions as a mannose-binding lectin that exhibits antifungal activity.
Plant Physiol., 166, 2014
2KIA
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BU of 2kia by Molmil
Solution structure of Myosin VI C-terminal cargo-binding domain
Descriptor: Myosin-VI
Authors:Feng, W, Yu, C, Wei, Z, Miyanoiri, Y, Zhang, M.
Deposit date:2009-04-29
Release date:2009-09-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Myosin VI undergoes cargo-mediated dimerization
Cell(Cambridge,Mass.), 138, 2009
4RLL
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BU of 4rll by Molmil
Crystal structure of human CK2alpha in complex with the ATP-competitive inhibitor 4-[(E)-(fluoren-9-ylidenehydrazinylidene)-methyl] benzoate
Descriptor: 4-[(E)-(9H-fluoren-9-ylidenehydrazinylidene)methyl]benzoic acid, Casein kinase II subunit alpha, GLYCEROL
Authors:Guerra, B, Rasmussen, T.D.L, Schnitzler, A, Jensen, H.H, Boldyreff, B.S, Miyata, Y, Marcussen, N, Niefind, K, Issinger, O.G.
Deposit date:2014-10-17
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Protein kinase CK2 inhibition is associated with the destabilization of HIF-1 alpha in human cancer cells.
Cancer Lett, 356, 2015
4RLK
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BU of 4rlk by Molmil
Crystal structure of Z. mays CK2alpha in complex with the ATP-competitive inhibitor 4-[(E)-(fluoren-9-ylidenehydrazinylidene)-methyl] benzoate
Descriptor: 4-[(E)-(9H-fluoren-9-ylidenehydrazinylidene)methyl]benzoic acid, ACETATE ION, Casein kinase II subunit alpha, ...
Authors:Guerra, B, Rasmussen, T.D.L, Schnitzler, A, Jensen, H.H, Boldyreff, B.S, Miyata, Y, Marcussen, N, Niefind, K, Issinger, O.G.
Deposit date:2014-10-17
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Protein kinase CK2 inhibition is associated with the destabilization of HIF-1 alpha in human cancer cells.
Cancer Lett, 356, 2015
1IQT
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BU of 1iqt by Molmil
Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
Descriptor: heterogeneous nuclear ribonucleoprotein D0
Authors:Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S.
Deposit date:2001-08-01
Release date:2002-08-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA.
J.Mol.Biol., 311, 2001
1WS8
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BU of 1ws8 by Molmil
Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (II) ION, GLYCEROL, mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS7
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BU of 1ws7 by Molmil
Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (I) ION, Mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
5Z1N
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BU of 5z1n by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
Authors:Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
Deposit date:2017-12-27
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
5Z39
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BU of 5z39 by Molmil
Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from Dictyostelium discoideum form II
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, G-protein interacting protein 1, ...
Authors:Miyagawa, T, Koteishi, H, Kamimura, Y, Miyanaga, Y, Takeshita, K, Nakagawa, A, Ueda, M.
Deposit date:2018-01-05
Release date:2018-10-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis
Nat Commun, 9, 2018
3W9K
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BU of 3w9k by Molmil
Crystal structure of thermoacidophile-specific protein STK_08120 complexed with myristic acid
Descriptor: FATTY ACID-BINDING PROTEIN, MYRISTIC ACID
Authors:Miyakawa, T, Sawano, Y, Miyazono, K, Miyauchi, Y, Hatano, K, Tanokura, M.
Deposit date:2013-04-05
Release date:2013-07-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A thermoacidophile-specific protein family, DUF3211, functions as a fatty acid carrier with novel binding mode.
J.Bacteriol., 195, 2013
2LX2
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BU of 2lx2 by Molmil
1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
Descriptor: Type III antifreeze protein nfeAFP11
Authors:Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2KYD
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BU of 2kyd by Molmil
RDC and RCSA refinement of an A-form RNA: Improvements in Major Groove Width
Descriptor: RNA (5'-R(*CP*UP*AP*GP*UP*UP*AP*GP*CP*UP*AP*AP*CP*UP*AP*G)-3')
Authors:Tolbert, B.S, Summers, M.F, Miyazaki, Y, Barton, S, Kinde, B, Stark, P, Singh, R, Bax, A, Case, D.
Deposit date:2010-05-24
Release date:2010-07-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement.
J.Biomol.Nmr, 47, 2010
2LX3
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BU of 2lx3 by Molmil
1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
Descriptor: Type III antifreeze protein nfeAFP11
Authors:Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
Deposit date:2012-08-12
Release date:2013-07-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
1Z9H
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BU of 1z9h by Molmil
Microsomal prostaglandin E synthase type-2
Descriptor: ACETATE ION, CHLORIDE ION, INDOMETHACIN, ...
Authors:Yamada, T, Komoto, J, Watanabe, K, Ohmiya, Y, Takusagawa, F.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and Possible Catalytic Mechanism of Microsomal Prostaglandin E Synthase Type 2 (mPGES-2).
J.Mol.Biol., 348, 2005
3A31
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BU of 3a31 by Molmil
Crystal structure of putative threonyl-tRNA synthetase ThrRS-1 from Aeropyrum pernix (selenomethionine derivative)
Descriptor: Probable threonyl-tRNA synthetase 1, SULFATE ION, ZINC ION
Authors:Shimizu, S, Juan, E.C.M, Miyashita, Y, Sato, Y, Hoque, M.M, Suzuki, K, Yogiashi, M, Tsunoda, M, Dock-Bregeon, A.-C, Moras, D, Sekiguchi, T, Takenaka, A.
Deposit date:2009-06-07
Release date:2009-10-27
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Two complementary enzymes for threonylation of tRNA in crenarchaeota: crystal structure of Aeropyrum pernix threonyl-tRNA synthetase lacking a cis-editing domain
J.Mol.Biol., 394, 2009
3A32
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BU of 3a32 by Molmil
Crystal structure of putative threonyl-tRNA synthetase ThrRS-1 from Aeropyrum pernix
Descriptor: Probable threonyl-tRNA synthetase 1, SULFATE ION, ZINC ION
Authors:Shimizu, S, Juan, E.C.M, Miyashita, Y, Sato, Y, Hoque, M.M, Suzuki, K, Yogiashi, M, Tsunoda, M, Dock-Bregeon, A.-C, Moras, D, Sekiguchi, T, Takenaka, A.
Deposit date:2009-06-07
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Two complementary enzymes for threonylation of tRNA in crenarchaeota: crystal structure of Aeropyrum pernix threonyl-tRNA synthetase lacking a cis-editing domain
J.Mol.Biol., 394, 2009
5Z76
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BU of 5z76 by Molmil
Artificial L-threonine 3-dehydrogenase designed by full consensus design
Descriptor: Artificial L-threonine 3-dehydrogenase
Authors:Nakano, S, Motoyama, T, Miyashita, Y, Ishizuka, Y, Matsuo, N, Tokiwa, H, Shinoda, S, Asano, Y, Ito, S.
Deposit date:2018-01-27
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Benchmark Analysis of Native and Artificial NAD+-Dependent Enzymes Generated by a Sequence-Based Design Method with or without Phylogenetic Data.
Biochemistry, 57, 2018
7WAF
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BU of 7waf by Molmil
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg)
Descriptor: 4x(beta-Asp-Arg), ARGININE, Cyanophycin synthase, ...
Authors:Miyakawa, T, Yang, J, Kawasaki, M, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M.
Deposit date:2021-12-14
Release date:2022-09-07
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase.
Nat Commun, 13, 2022
7WAC
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BU of 7wac by Molmil
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1)
Descriptor: Cyanophycin synthase
Authors:Kawasaki, M, Miyakawa, T, Yang, J, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M.
Deposit date:2021-12-14
Release date:2022-09-07
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase.
Nat Commun, 13, 2022
7WAD
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BU of 7wad by Molmil
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS
Descriptor: Cyanophycin synthase, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Kawasaki, M, Miyakawa, T, Yang, J, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M.
Deposit date:2021-12-14
Release date:2022-09-07
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase.
Nat Commun, 13, 2022
7WAE
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BU of 7wae by Molmil
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate
Descriptor: 4x(beta-Asp-Arg), ARGININE, ASPARTIC ACID, ...
Authors:Miyakawa, T, Yang, J, Kawasaki, M, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M.
Deposit date:2021-12-14
Release date:2022-09-07
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase.
Nat Commun, 13, 2022

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數據於2024-06-26公開中

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