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1UZ5
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BU of 1uz5 by Molmil
The Crystal Structure of molybdopterin biosynthesis moea protein from Pyrococcus horikosii
Descriptor: 402AA LONG HYPOTHETICAL MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN, SULFATE ION
Authors:Takahashi, H, Tahirov, T.H.
Deposit date:2004-03-05
Release date:2004-03-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Crystal Structure of Molybdopterin Biosynthesis Moeaprotein from Pyrococcus Horikosii
To be Published
2Z5V
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BU of 2z5v by Molmil
Solution structure of the TIR domain of human MyD88
Descriptor: Myeloid differentiation primary response protein MyD88
Authors:Ohnishi, H, Tochio, H, Hiroaki, H, Kondo, N, Kato, Z, Shirakawa, M.
Deposit date:2007-07-19
Release date:2008-08-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling.
Proc.Natl.Acad.Sci.USA, 2009
2BA3
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BU of 2ba3 by Molmil
NMR Structure of NikA N-terminal Fragment
Descriptor: NikA
Authors:Yoshida, H, Furuya, N, Lin, Y.J, Guntert, P, Komano, T, Kainosho, M.
Deposit date:2005-10-14
Release date:2006-10-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR Structure of NikA N-teminal Fragment
To be Published
2E2P
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BU of 2e2p by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with ADP
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, ...
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2Q
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BU of 2e2q by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with xylose, Mg2+, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, MAGNESIUM ION, ...
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2N
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BU of 2e2n by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in the apo form
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEXOKINASE, SULFATE ION
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
2E2O
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BU of 2e2o by Molmil
Crystal structure of Sulfolobus tokodaii hexokinase in complex with glucose
Descriptor: HEXOKINASE, beta-D-glucopyranose
Authors:Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T.
Deposit date:2006-11-15
Release date:2007-01-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii.
J.Biol.Chem., 282, 2007
336D
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BU of 336d by Molmil
INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE
Authors:Ohishi, H, Terasoma, N, Nakanishi, I, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Hakoshima, T, Tomita, K.-I.
Deposit date:1997-06-24
Release date:1998-04-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1 Å)
Cite:Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex.
FEBS Lett., 398, 1996
3A2F
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BU of 3a2f by Molmil
Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex
Descriptor: DNA polymerase, DNA polymerase sliding clamp
Authors:Nishida, H, Ishino, Y, Morikawa, K.
Deposit date:2009-05-15
Release date:2009-11-03
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex
To be Published
3AX7
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BU of 3ax7 by Molmil
Bovine Xanthine Oxidase, protease cleaved form
Descriptor: 2-HYDROXYBENZOIC ACID, BICARBONATE ION, CALCIUM ION, ...
Authors:Ishikita, H, Eger, B.T, Pai, E.F, Okamoto, K, Nishino, T.
Deposit date:2011-03-30
Release date:2012-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Protein conformational gating of enzymatic activity in xanthine oxidoreductase
J.Am.Chem.Soc., 134, 2012
3AX9
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BU of 3ax9 by Molmil
Bovine xanthine oxidase, protease cleaved form
Descriptor: 2-HYDROXYBENZOIC ACID, BICARBONATE ION, CALCIUM ION, ...
Authors:Ishikita, H, Eger, B.T, Pai, E.F, Okamoto, K, Nishino, T.
Deposit date:2011-03-31
Release date:2012-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein conformational gating of enzymatic activity in xanthine oxidoreductase
J.Am.Chem.Soc., 134, 2012
2COV
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BU of 2cov by Molmil
Crystal structure of CBM31 from beta-1,3-xylanase
Descriptor: beta-1,3-xylanase
Authors:Hashimoto, H, Tamai, Y, Okazaki, F, Tamaru, Y, Shimizu, T, Araki, T, Sato, M.
Deposit date:2005-05-18
Release date:2005-09-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan
Febs Lett., 579, 2005
2CFM
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BU of 2cfm by Molmil
ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, THERMOSTABLE DNA LIGASE
Authors:Nishida, H, Ishino, Y, Morikawa, K.
Deposit date:2006-02-22
Release date:2006-07-12
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Closed Structure of an Archaeal DNA Ligase from Pyrococcus Furiosus.
J.Mol.Biol., 360, 2006
2ELG
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BU of 2elg by Molmil
The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, SODIUM ION, ...
Authors:Ohishi, H, Tozuka, Y, Zhou, D.Y, Ishida, T, Nakatani, K.
Deposit date:2007-03-27
Release date:2008-04-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:The rare crystallographic structure of d(CGCGCG)(2): The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C
Biochem.Biophys.Res.Commun., 358, 2007
3A4Y
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BU of 3a4y by Molmil
Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
to be published
2EX2
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BU of 2ex2 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli
Descriptor: GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-07
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EXA
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BU of 2exa by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM
Descriptor: (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EX9
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BU of 2ex9 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V
Descriptor: (2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EX8
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BU of 2ex8 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G
Descriptor: OPEN FORM - PENICILLIN G, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EXB
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BU of 2exb by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX
Descriptor: 2,2-dimethylpropanoyloxymethyl (2R)-5-(aminocarbonyloxymethyl)-2-[(1R)-1-[[(Z)-2-(2-azanyl-1,3-thiazol-4-yl)pent-2-enoyl]amino]-2-oxidanylidene-ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylate, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
2EX6
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BU of 2ex6 by Molmil
Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin
Descriptor: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4
Authors:Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H.
Deposit date:2005-11-08
Release date:2006-06-13
Last modified:2016-10-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics
Biochemistry, 45, 2006
8JS5
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BU of 8js5 by Molmil
Dimeric PAS domains of oxygen sensor FixL with ferric unliganded heme
Descriptor: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Kamaya, M, Koteishi, H, Sawai, H, Sugimoto, H, Shiro, Y.
Deposit date:2023-06-19
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme.
To be published
8JS7
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BU of 8js7 by Molmil
Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme
Descriptor: GLYCEROL, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kamaya, M, Koteishi, H, Sawai, H, Sugimoto, H, Shiro, Y.
Deposit date:2023-06-19
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme.
To be published
8JS6
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BU of 8js6 by Molmil
Dimeric PAS domains of oxygen sensor FixL in complex with cyanide-bound ferric heme
Descriptor: CYANIDE ION, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kamaya, M, Koteishi, H, Sawai, H, Sugimoto, H, Shiro, Y.
Deposit date:2023-06-19
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme.
To be published
3W69
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BU of 3w69 by Molmil
Crystal structure of human mdm2 with a dihydroimidazothiazole inhibitor
Descriptor: (5R,6S)-2-[((2S,5R)-2-{[(3R)-4-acetyl-3-methylpiperazin-1-yl]carbonyl}-5-ethylpyrrolidin-1-yl)carbonyl]-5,6-bis(4-chlorophenyl)-3-isopropyl-6-methyl-5,6-dihydroimidazo[2,1-b][1,3]thiazole, E3 ubiquitin-protein ligase Mdm2, SULFATE ION
Authors:Shimizu, H, Katakura, S, Miyazaki, M, Naito, H, Sugimoto, Y, Kawato, H, Okayama, T, Soga, T.
Deposit date:2013-02-12
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Synthesis and evaluation of novel orally active p53-MDM2 interaction inhibitors
Bioorg.Med.Chem., 21, 2013

222036

數據於2024-07-03公開中

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